Basic Information

Insect: Colostygia pectinataria
Gene Symbol: -
Assembly: GCA_951394395.1
Location: OX596375.1:362252-363787[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.035 2 9.4 0.1 3 23 157 178 156 178 0.91

2 10 0.26 15 6.7 2.2 1 23 184 206 184 206 0.98

3 10 0.61 35 5.5 1.9 1 23 212 234 212 234 0.97

4 10 0.00057 0.033 15.0 0.2 2 20 240 258 239 260 0.92

5 10 2.7e-06 0.00016 22.4 2.1 2 23 280 301 279 301 0.97

6 10 0.015 0.85 10.6 8.8 1 23 308 330 308 330 0.95

7 10 0.0014 0.079 13.9 2.9 1 23 336 358 336 358 0.96

8 10 0.00027 0.015 16.1 2.8 1 23 364 386 364 386 0.96

9 10 0.0034 0.19 12.6 3.1 1 23 392 414 392 414 0.98

10 10 1.1e-06 6.3e-05 23.6 3.4 1 23 420 443 420 443 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.035	2	9.4	0.1	3	23	157	178	156	178	0.91
2	10	0.26	15	6.7	2.2	1	23	184	206	184	206	0.98
3	10	0.61	35	5.5	1.9	1	23	212	234	212	234	0.97
4	10	0.00057	0.033	15.0	0.2	2	20	240	258	239	260	0.92
5	10	2.7e-06	0.00016	22.4	2.1	2	23	280	301	279	301	0.97
6	10	0.015	0.85	10.6	8.8	1	23	308	330	308	330	0.95
7	10	0.0014	0.079	13.9	2.9	1	23	336	358	336	358	0.96
8	10	0.00027	0.015	16.1	2.8	1	23	364	386	364	386	0.96
9	10	0.0034	0.19	12.6	3.1	1	23	392	414	392	414	0.98
10	10	1.1e-06	6.3e-05	23.6	3.4	1	23	420	443	420	443	0.98

Sequence Information

Coding Sequence: ATGAATACCGGCAATGTCTTCTGCCGACTTTGCGCGGAGCTGAAGCCCAGCAACAAACAAGTGGATCTTCTATGCGATATAGAGAAACGTAGCGAAGTAATCGAAAGACTAGGGCGACTAAATGCACCTATAGAATTTATCGATACTAAACTGCCCAGCACAGTGTGTTTAGACTGTTTAAGCTCACTAAACAAATGCATCGAATTCATAGTAAGTATAGAGTGCGCACAAAATGTACTGAACGACCTTTTCTACCTGCGAAATGTGAAACAAGAAACTCATTCCGATGACGAAGTTTCTTTGGATGGATCTGGGTTAAATGATGTCCACATCAAAACAGAGTCTGATGACGAGGTCTTGCATACACCCAAGAAAATAAGAACTCCAAGTAAAGTCAAAAAAAGCGGCTCATTAGACTCTATCCCTTTATCTCAGCTAAAACAGACATGGGCAAACTATAACTGGCTGTGTACCTATTGTGAAACTATGTTCCCATCAATAGACGAACTGCTTACACATTCCATGGCTGTCCACGGCAGCTGCAACCCTTACCGATGCTCAAAATGCAAGATCCGCAAAGAACGCCTAGACATGTTCGTACGACACCTACAAAGACACAGTCAACACTTAAAATACTCTTGTTTTAAATGTATGAAGCAGTTTAAGACCTTACCTATGGCCCGGAACCATAGTAAAGTTCACTTTAATTTGGAACTTAGCTGTCCAGGATGCAATTCAACATTCAAAACTAGTGATGAACTACAATTGCACAAAGATACCTATCTAAAAGTGAAATATCTAAGAGATATGCCACGGTCACTCATTGCAAAAGAATTGACTTGCAATGACTGCTCAAAAACATTCAAAAGCCGGAACAGTCTTAATACACATCTTCTAACACACACTGAAAGGAAACGCGAACACATCTGTGAGGTTTGTGGAAAGTGCTTCTTCCAGAAACATAATCTAGCCTGTCATATGTTCATGCACAGTGACGATCGACCACACAAATGCCAAATTTGCAAGCTTGGTTttaaaaccggaacacagttaCGACACCACATAGGAGTTCACAATAATGATAAACCATTCTCGTGTGATCAATGCGGGCGTTGCTTCAGACTACTTAAACAACTTAAGAACCACAGCATCATCCACACAGATTCACTGCCGTATGAGTGCGTTCACTGTGAAAAGCGTTTCAGATTCAAAACTATTCTTAACAACCATGTACGACTGCACACTGGTGTTAAACCTTACTCGTGCAATACATGTCAGCGTGATTTCTCCAACTGGTCCAATTATAACAAACATATGAAGCGCAAGCATAACCATGACACATCTAAGAAGAAACACACTCCTGAAGGAGTATACCCTATTGACCCGAGCACCGGAGAAGTGATAATACTGACAGAAACCAAACAGATGTTGGAATGGAAAAAGAAAATGTTGCAAGGAAGAAGGCCGCGACGACCAAAACCAAGTCAAACAGAGAGTCTTGTTAAAACTGAGAACAGTTTAGAGTTTTCAAGTTAA
Protein Sequence: MNTGNVFCRLCAELKPSNKQVDLLCDIEKRSEVIERLGRLNAPIEFIDTKLPSTVCLDCLSSLNKCIEFIVSIECAQNVLNDLFYLRNVKQETHSDDEVSLDGSGLNDVHIKTESDDEVLHTPKKIRTPSKVKKSGSLDSIPLSQLKQTWANYNWLCTYCETMFPSIDELLTHSMAVHGSCNPYRCSKCKIRKERLDMFVRHLQRHSQHLKYSCFKCMKQFKTLPMARNHSKVHFNLELSCPGCNSTFKTSDELQLHKDTYLKVKYLRDMPRSLIAKELTCNDCSKTFKSRNSLNTHLLTHTERKREHICEVCGKCFFQKHNLACHMFMHSDDRPHKCQICKLGFKTGTQLRHHIGVHNNDKPFSCDQCGRCFRLLKQLKNHSIIHTDSLPYECVHCEKRFRFKTILNNHVRLHTGVKPYSCNTCQRDFSNWSNYNKHMKRKHNHDTSKKKHTPEGVYPIDPSTGEVIILTETKQMLEWKKKMLQGRRPRRPKPSQTESLVKTENSLEFSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00857007;
90% Identity: -
80% Identity: -