Basic Information

Insect: Colostygia pectinataria
Gene Symbol: -
Assembly: GCA_951394395.1
Location: OX596370.1:1519214-1529756[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.2e-05 0.0019 19.0 1.7 1 23 314 337 314 337 0.97

2 10 0.33 19 6.4 6.0 2 23 345 366 344 366 0.97

3 10 9.5 5.4e+02 1.8 0.1 1 11 370 380 370 388 0.84

4 10 0.00028 0.016 16.0 5.7 2 23 398 419 397 419 0.97

5 10 0.00023 0.013 16.3 0.3 1 23 423 446 423 446 0.98

6 10 0.11 6.4 7.8 0.2 2 19 460 477 459 479 0.93

7 10 0.00053 0.03 15.2 1.6 3 23 513 534 511 534 0.94

8 10 0.0032 0.19 12.7 0.0 3 23 554 574 552 574 0.97

9 10 0.00025 0.014 16.2 1.1 1 23 580 602 580 602 0.99

10 10 3.5e-06 0.0002 22.0 2.4 1 23 608 630 608 630 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.2e-05	0.0019	19.0	1.7	1	23	314	337	314	337	0.97
2	10	0.33	19	6.4	6.0	2	23	345	366	344	366	0.97
3	10	9.5	5.4e+02	1.8	0.1	1	11	370	380	370	388	0.84
4	10	0.00028	0.016	16.0	5.7	2	23	398	419	397	419	0.97
5	10	0.00023	0.013	16.3	0.3	1	23	423	446	423	446	0.98
6	10	0.11	6.4	7.8	0.2	2	19	460	477	459	479	0.93
7	10	0.00053	0.03	15.2	1.6	3	23	513	534	511	534	0.94
8	10	0.0032	0.19	12.7	0.0	3	23	554	574	552	574	0.97
9	10	0.00025	0.014	16.2	1.1	1	23	580	602	580	602	0.99
10	10	3.5e-06	0.0002	22.0	2.4	1	23	608	630	608	630	0.98

Sequence Information

Coding Sequence: ATGTCTCATGTCAAATTATGTCGAATTTGTGTAAGAAAAGATGTAAAAATGTTTGAGCACGATCGGTTCCAGTTGATGTTTTATTACAAAGAAGTTACCGGCTCTAAAataTCAAGCAGAGATTGTTTGCCAAAATGGTTTTGTTTTGAATGTGCGGCATTATTGCACAAATTCCATGAGTtcaaaaaaaagtgtacccatggacagatattatttaaaaaactattggAGACAGGCTGTGCTAACACAGATAATGTGGCTCGAAGAAACATAATCACAGGCTCCCAGCCTCACTTGCAAATACTTTcagcatttaaaaataaacttgttaaAACATATACAGTACAACACACTGCTACTGGAATAAAAACACACAGTAAACAGTACAACAGTTTCACAGAAGTATTTGTCGATGTAAAATCTGATGTTGATAATGACATAGGCAGTTCTAACTTGTCTATAGATAAAGAAATTGATGTAGAAAATATAGCTGAGGCAAATGAACTGCAGTCATTTGATAATGACATGCACAGTAATGATTCTAACAATATACCACTTGTAATCAATACTAAAGATGCGGATCATGATAAAAGCGAGGCTGACATTGATAGAAATAGCAATGATACACAAACAAATAACATTGACATCACTAAAGAACAAACAAGTTATTTCGAAACAACACACCATGACATAGAAATACCAAACTCAGTCACAGAAAATGCTGACTACAAAGAAAGTCAAAATAAGTCAATAATTGAAGTAACATCTAGTCAAAATACTGAATTATCAGAACAGCCAAACTTAGATAACAAATTCCAAAGATCAGTTAAAAAGAAGTTTCTAGATGAGAACCATTGGACAAAGATTACTCTCTCTGATGAGGAGGCAACAAGGAGGTTTCAAGCGAAGGCTCTGGAGCAGAAGTACTTAAAAGCTGAATTTAAGTGCGGTGACTGTTATAGGACTTTCTCACAAGAAGACATGATGAAAAGACATATTAAGCTGAGGCATTGTGAGTCATTAGGTCCCAACAAATGCCGGCACTGCAGAATGCGCTTCAAATGGAAATCCCGGCTTCAAAAGCATTTGAAAGAACATTATACCATCTACAAGTGCCTCAGATGTGAGCTGTCATTTCCTGTTGAAATATCAGCGTTTCAACACGACTATTCTCATAACGGTGTGACTTGGACATGCGCGCATTGTGGCCAAAGATTTAGGCACAGTTCCACATACTACACCCACCTGAGGAAGCATAAGAGTAAATACGTGTGCACTCTGTGCGGAGTGTCGTTCGTAAGCGAATTCGGACTATTCATGCACAGACGAGTTAAACACGTCATCAGCGatGATTTCAAAGAAGTAGGCAGTAATACGTACTGCAAGGTGTGCGACATGAGGTTCGACACACTGAAGGGGTTCGAGGAGCATTTTGCTGAGTCTGCGCTGCATGCTACGGAAGTCCTGGATGGCGCTACCTGCCTACCCCTAAAGACAAGATGTACCAAGAAACGTGTGCCACGGATTTCTACCAATTGCGTTACAtGTGGGAAAACATTTTCAACGTACGCAGCGTTTTCCAAACACCATTTGTCGGCTCACCCCGGCCTGGCTCTGCCCAAATCGCGGACAGACAAGCAGGACGGGCAGAGGCAGATCTGTGAGGTCTGCGGGGTCACTTTAGCGAGCGCGTGGTCTCTAGTGAACCACCTGAACACTCACTCGCGCGACAAGCGGTACACGTGCCGCACCTGCGGCATGCAGCTCAGCTCGCGCAGCGTGCTGCAGCGGCACCAGCTGACTCACACAAACGAGAAGAACTTCGTGTGTGACAAGTGCGACAAAAAGTTTTCCCACCGCTCGGGGCTCGGACTGCATCTACGAACTCACGAGAAAGAGTACAGCCCTTCCAGaaatagaaagaaaaagTCCGAACCACAAAACGTTATGGATTACTTCAAAAACTACAACTATAgatag
Protein Sequence: MSHVKLCRICVRKDVKMFEHDRFQLMFYYKEVTGSKISSRDCLPKWFCFECAALLHKFHEFKKKCTHGQILFKKLLETGCANTDNVARRNIITGSQPHLQILSAFKNKLVKTYTVQHTATGIKTHSKQYNSFTEVFVDVKSDVDNDIGSSNLSIDKEIDVENIAEANELQSFDNDMHSNDSNNIPLVINTKDADHDKSEADIDRNSNDTQTNNIDITKEQTSYFETTHHDIEIPNSVTENADYKESQNKSIIEVTSSQNTELSEQPNLDNKFQRSVKKKFLDENHWTKITLSDEEATRRFQAKALEQKYLKAEFKCGDCYRTFSQEDMMKRHIKLRHCESLGPNKCRHCRMRFKWKSRLQKHLKEHYTIYKCLRCELSFPVEISAFQHDYSHNGVTWTCAHCGQRFRHSSTYYTHLRKHKSKYVCTLCGVSFVSEFGLFMHRRVKHVISDDFKEVGSNTYCKVCDMRFDTLKGFEEHFAESALHATEVLDGATCLPLKTRCTKKRVPRISTNCVTCGKTFSTYAAFSKHHLSAHPGLALPKSRTDKQDGQRQICEVCGVTLASAWSLVNHLNTHSRDKRYTCRTCGMQLSSRSVLQRHQLTHTNEKNFVCDKCDKKFSHRSGLGLHLRTHEKEYSPSRNRKKKSEPQNVMDYFKNYNYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -