Cpec020934.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596377.1:4602928-4605860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.3 74 4.5 0.6 1 20 112 131 112 133 0.88 2 17 0.00016 0.0091 16.8 2.6 1 23 163 185 163 185 0.98 3 17 0.0014 0.083 13.8 0.9 3 23 191 212 190 212 0.95 4 17 0.14 8 7.5 4.6 2 21 216 235 215 236 0.92 5 17 0.0088 0.5 11.3 0.3 1 23 245 268 245 268 0.93 6 17 0.00073 0.042 14.7 5.8 1 23 274 296 274 296 0.98 7 17 5.9e-06 0.00034 21.3 1.4 1 23 303 326 303 326 0.97 8 17 0.00021 0.012 16.4 1.0 1 21 339 359 339 363 0.91 9 17 0.025 1.5 9.9 1.9 2 21 480 499 477 500 0.91 10 17 0.078 4.5 8.3 0.5 1 23 531 554 531 554 0.96 11 17 0.0039 0.22 12.4 2.8 1 19 559 577 559 581 0.91 12 17 1.1 63 4.7 4.9 1 21 584 604 584 605 0.91 13 17 9.8e-05 0.0056 17.5 1.1 1 23 616 639 616 639 0.95 14 17 1.6e-05 0.00093 19.9 1.9 1 23 645 667 645 667 0.98 15 17 0.081 4.7 8.3 0.5 5 23 677 695 676 695 0.96 16 17 0.028 1.6 9.7 1.2 1 23 701 724 701 724 0.92 17 17 0.074 4.2 8.4 4.6 3 23 734 755 733 755 0.97
Sequence Information
- Coding Sequence
- ATGGAGGACAATGCCGAGATGCCGCGGCAAGTGTGCCAATGCTGTATGTCTCACATCACCGCCTTCCTGCCTTTTATAACACTGTGCAAAGAATCAGCAGCGCGTTGGAGCTACCTATCCGAGCAATTGTTCAACATTTCCAACCACACTAGAGCTACGACTGCTTTCGTCTTTGTTACCGACAGCGTACGAACCGTGCTCGAACGAAGAGTTGAAAAAGTAaacttaaaaaatgtaaatataaatataaatcgcCTCCGTAAGGTAAAGAGACGGATTTTTAAGAAACCTAAACAAGATCATGAGGGAATGAGCCAGTGGAAAGCGAGAGTTTACACCTGTGTAGAGTGCGGGTCAACTTATACCAAGCTGTGTAAGATCAACCTTCACCTAGCTAACCAGAACAAGCGTCTTTGTCGGCACTGCTATAAAATAGTGAACCTTAAAACATTTGGGGAACATTTACAAACGCACGCCATACCCTTCTATAAATGCGAGGTTTGCTCTCAGGCTTTCGAGCACGAAGATCAGTTGGAGAAACATCAGCACTTACATAAAGGAAGGAACATGTGCGCTGAATGTAAATTAACTTTTCCCACAGCGGATAATCTAACGCTACACGTGCATAGAAAACACCAGGCGGATGTTTGCACCAACTGCAGCAGGAAGTTTTCCAATCGGATCTGCTTGTATAAGCACAGACACAAATGTAGATCAAAAATTCTAAAAACGTATATTTGCGATTACTGCTCCAAAGAGTTCAACGATCGTACTGTAATCAAATCCCACATAACGTTAGTACATTCTAAGAAACTGCTGCATCAATGCGAACGGTGCGGTAAGCAGTTCAACAGCGCTTGTCATTTAGAAGAACATTATGAAACACACGATGTGATTCTCGACAGATACGTGTGCCAATACTGTGATAGAATATACAGCTCATCGGGAGGTTTCCGAAGACACATGAGGCAGAAACATTATAGCCTTAATCCGCAGTTGAAAAACAAAGCAAAATACTTCTGCGATGTCTGCAAAATGAGTTTCATCAGCGCAAAAAATCTGAACAACCATTTAAAAGCGAAGAAACACAAGATAAAAGATAAATTTCTTAGAAAAGAATTGCAgagaaaaaatactGTCGATAATGACGCCGTCCTGCCGCCGGGGCTGTGCCGCGCGTGCGCAGAAGACGTCGTCACCGCCGCTAAGTTTAAACATCTCTGCGAGAAGTCAGCTTACCGATGGAACGAGGCGGCCACGTACCTCTCGAGAATAAACCTCGACAGCGAGGACAAGACCCTCTTCTATATGTGCGAGGACAACGATATGCTTCTATGTGAAAAACGAATCGGCACCGTAGGATCCGCTGTGACCATTTTAGAaaacgaaagaagaagaaaggaaAAGATAAAACCCAAGCAGAAAGAATTCAAGTGTGCTTGCCCGAACTGCGATAAGCTGTTTCGATCTCTGGAGGTTCTAAACCAGCACTTGAAGCACGGATCGAAGGCGGTCTGCTGCGAATGCGGCTCGGTCCTTTGCAAGACTGAAATATCCAACCATATGCGAGACACGCACCAAGTAGACACATTCGCATGCAAGATCTGCTACAACCTGTTCACCAGCTATGGCGATGCCAAATGGCACATGCTGAGGTACCACGGCCCTAGATCCTTCACTTGCAAGGATTGTGGCCGCGGGTACAAAAGCGAAAGAGGGTTGAAAGCTCACTGCTATTCGCATTCCCTCTTCTGTTGCGTTGCTTGCGGGCGAAGCTTTGACAATAACCGCTGCTATCGATACCACAGAAGCACTTGCAAGTCCAAAAAGCCTGAATTCACCTCATACGAGTGCCACGACTGTGGACAGCGATACGACAAAAAGCCCTCCCTAAAAATACACATCATTCAAAAGCATCTGAACGTGTTGCCGTACAGTTGTCAGATATGCGGCAAGCGAACGTCGACGCTAGCGCATCTGAGGTCTCACGAGCAGACGCACGATGGAAACAGAAAGATGTTGGAGTGCCAATGCGGCGCGAAGTTTCGTACCGAGTTGGGTTATCGTCTGCATATGAGAATTCACAGTGGCTTGAAGCCGTACAAGTGCAGTGAGTGCGAGCAGTCGTTTATATCGGCGTCGCGGCGCTTGGACCACAGCAAGCGGCGGCACAAGAGCAGCAACGAGCTCGCTCACGGTTGCGAGCGATGCTCTGCAAGGTTCATCCGACCCTGCGAGCTGAGGAAGCATACTAGGCAATGCCACACCACAGACAACGAACCAATGCACTGA
- Protein Sequence
- MEDNAEMPRQVCQCCMSHITAFLPFITLCKESAARWSYLSEQLFNISNHTRATTAFVFVTDSVRTVLERRVEKVNLKNVNININRLRKVKRRIFKKPKQDHEGMSQWKARVYTCVECGSTYTKLCKINLHLANQNKRLCRHCYKIVNLKTFGEHLQTHAIPFYKCEVCSQAFEHEDQLEKHQHLHKGRNMCAECKLTFPTADNLTLHVHRKHQADVCTNCSRKFSNRICLYKHRHKCRSKILKTYICDYCSKEFNDRTVIKSHITLVHSKKLLHQCERCGKQFNSACHLEEHYETHDVILDRYVCQYCDRIYSSSGGFRRHMRQKHYSLNPQLKNKAKYFCDVCKMSFISAKNLNNHLKAKKHKIKDKFLRKELQRKNTVDNDAVLPPGLCRACAEDVVTAAKFKHLCEKSAYRWNEAATYLSRINLDSEDKTLFYMCEDNDMLLCEKRIGTVGSAVTILENERRRKEKIKPKQKEFKCACPNCDKLFRSLEVLNQHLKHGSKAVCCECGSVLCKTEISNHMRDTHQVDTFACKICYNLFTSYGDAKWHMLRYHGPRSFTCKDCGRGYKSERGLKAHCYSHSLFCCVACGRSFDNNRCYRYHRSTCKSKKPEFTSYECHDCGQRYDKKPSLKIHIIQKHLNVLPYSCQICGKRTSTLAHLRSHEQTHDGNRKMLECQCGAKFRTELGYRLHMRIHSGLKPYKCSECEQSFISASRRLDHSKRRHKSSNELAHGCERCSARFIRPCELRKHTRQCHTTDNEPMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -