Basic Information

Insect: Colostygia pectinataria
Gene Symbol: -
Assembly: GCA_951394395.1
Location: OX596360.1:9269591-9272592[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.4e-07 8.2e-06 26.4 3.3 1 23 273 295 273 295 0.99

2 11 0.0063 0.36 11.8 10.8 1 23 301 324 301 324 0.97

3 11 0.033 1.9 9.5 0.1 3 23 335 355 334 355 0.98

4 11 0.0094 0.54 11.2 4.8 1 23 362 384 362 384 0.97

5 11 0.014 0.82 10.7 1.7 1 23 390 412 390 412 0.99

6 11 0.0041 0.23 12.4 3.9 1 23 418 441 418 441 0.96

7 11 0.28 16 6.6 2.1 2 23 447 466 446 466 0.89

8 11 0.00028 0.016 16.0 4.3 1 21 472 492 472 494 0.94

9 11 2.5e-06 0.00014 22.5 3.1 1 23 500 522 500 522 0.98

10 11 0.00015 0.0084 16.9 1.3 1 23 528 551 528 551 0.97

11 11 0.04 2.3 9.2 4.1 1 21 557 577 557 578 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.4e-07	8.2e-06	26.4	3.3	1	23	273	295	273	295	0.99
2	11	0.0063	0.36	11.8	10.8	1	23	301	324	301	324	0.97
3	11	0.033	1.9	9.5	0.1	3	23	335	355	334	355	0.98
4	11	0.0094	0.54	11.2	4.8	1	23	362	384	362	384	0.97
5	11	0.014	0.82	10.7	1.7	1	23	390	412	390	412	0.99
6	11	0.0041	0.23	12.4	3.9	1	23	418	441	418	441	0.96
7	11	0.28	16	6.6	2.1	2	23	447	466	446	466	0.89
8	11	0.00028	0.016	16.0	4.3	1	21	472	492	472	494	0.94
9	11	2.5e-06	0.00014	22.5	3.1	1	23	500	522	500	522	0.98
10	11	0.00015	0.0084	16.9	1.3	1	23	528	551	528	551	0.97
11	11	0.04	2.3	9.2	4.1	1	21	557	577	557	578	0.95

Sequence Information

Coding Sequence: ATGGCTAATGTAAAGGGTAGAGTAAACTCTCCCAAAAGTGCTACTAGTAGAAGAGGCCGCGGTAATTCAAAACAATCCTTGACAGGTCAGAAAAACTCTCCAGATTCAGGAAAGAAACTGAAAGCAATTAATGTCCCAAGAAAAGCAGGAGATCTCACAGCATTACAACAAGTTCTTATGCAAAATGAGCCAATTGACTTCAATAAATGTACAGAAAAGCTACTGAAACTAAGCCAACCACCAAAAATAGCAAAGCCAAGAAAAAGTAGAAGTAAAACTAAACCACAAGAAATACCTAGGTTTGTTTCAAGAGGGGGACGGCTTGTCGGACCCAGGACCAAAGAAGGCTTAAAAATGATTGATACAATCCTAAAAGGAGAACTTATGATTGAGATAGAATTGCCAACGAAAACAATTGAAAAAGCAGTGGTCACGACTATTACCAACAATAATGAAATGGGAATAAATGACCAAAATGCGACATGTGGTTTGCCAGTGTTTAGAACCGttgaagagaaaaataaaaaaccagaagtaaaaaaaaaaagaaaaccagTAAAACAAACTCCTGAAGATGACAGTAAACCTGGAATACAAACCAGAAGTAAATTCATACTACCAGTTAAAAACGAAAACGAGAAACCTACAGCAAAACCTAAAACATCAGCTAAAACCAAAAAGACAACACGGAACAAAAATGTTGCTCCGATAAAAAATAGTCAAACCaaaggaattaaaaaaaataacccaaATGACAAGAATGTGAAAACAAAACAAGTGACTCTCAGTAACGGCTTGGTGCTTACTCTGGCTCTATTCCAGTGTGACTAttgcaaaaaaatgtttagcagtAAAGCATCTCTCCGCAGACACATGTACACTCATCTCAAGTTAGAGCCTCACCGTTGCAAAATGTGCACAAAAAAATTCCGTTACAAAATGCACTTGCATAATCACATAAATAAGTACCACAAAGAACATAGAAACCTCGAACCCATGCTTTGCCAAATATGTGACAAAGAGTTTCTGCTAGAAGAGAATCTAGAACTACATTTATCTACACATATCAAAAACGAAAACTCATTTAAATGTGTGTTCTGTGACAAGAAGTTTTCATACCACTTACTGCTAACTCAGCATGAGAAGCAACACCTTCTCACTGGCAAGTACCAGTGTTCAGTCTGCCAGCTGAGTTTTGATTCAATCAATCGCTTGAAATTCCACATGAAGACCCACTTGAAAATCAAAGATTACATTTGCCAGCATTGCGGGAAAGAGTTCTTAAGAATGAATTCATTGAGAAGGCACGTTCAGATTTGCCACAGCGGTCATCGACTCCAGTGTCCAGTTTGTATGAAGAAGTTGAAAGGTCATTTGACAGAACACATGAGGACCCACAAACAGGCGCGGCCTCACGAATGCGAGATGTGCGGGCAGCGGTTTACTCAGTCCACTCAACTGACAGTTCATCGCAGATGTCATACAGGAGAAAGGCCATTCTCCTGCAAAATATGCGGTCGTCAGTTCACCCACTCCAACTCTCTAATGCTCCACATTCGTCGGCACACAGGAGAGAAACCTTTTAAGTGCACCGTTTGCCCATTATCCTTCACTCAACTACCCCACATGAAGACGCATTTGATAAAGATCCACAACCAAGATACTCCTTACAAGTGCAAAAAATGTCATACATTCTTCAAGATGAAGAAGCAGGTGGATAGTCACATAAAGAACTGTAAAGTCGGAGAGCGGGAGTTGACGTTTGAGGAGAAGATTCAAGCTTCAGTGCAATACGAGGAGGTTAAAATCGAAACCCCGATGTCGCTGTCCCGGATGCGGTATCTTCTCGCATTACTACTGACGATGGTTGCAAACAAAAAAAGCCTCAAGTTTCTAGGGTTCAACAAACGCCCCATAGAAGAACTACTCTTGGAGTCGATTGAGGCTATTGGAAAAACTCCCTGCAAAGATGAATCTATAGCGCCAATAATCCGGCTCAAAACCAACATACAGACACTACTAGATGGTACTATTCCTGCCTATCAAATGGACAAGTTTAAAAAGGAACATAAAACGACGGAGGAAATTCTGGAGATCTTGACAGATGATAAGAagaatagataa
Protein Sequence: MANVKGRVNSPKSATSRRGRGNSKQSLTGQKNSPDSGKKLKAINVPRKAGDLTALQQVLMQNEPIDFNKCTEKLLKLSQPPKIAKPRKSRSKTKPQEIPRFVSRGGRLVGPRTKEGLKMIDTILKGELMIEIELPTKTIEKAVVTTITNNNEMGINDQNATCGLPVFRTVEEKNKKPEVKKKRKPVKQTPEDDSKPGIQTRSKFILPVKNENEKPTAKPKTSAKTKKTTRNKNVAPIKNSQTKGIKKNNPNDKNVKTKQVTLSNGLVLTLALFQCDYCKKMFSSKASLRRHMYTHLKLEPHRCKMCTKKFRYKMHLHNHINKYHKEHRNLEPMLCQICDKEFLLEENLELHLSTHIKNENSFKCVFCDKKFSYHLLLTQHEKQHLLTGKYQCSVCQLSFDSINRLKFHMKTHLKIKDYICQHCGKEFLRMNSLRRHVQICHSGHRLQCPVCMKKLKGHLTEHMRTHKQARPHECEMCGQRFTQSTQLTVHRRCHTGERPFSCKICGRQFTHSNSLMLHIRRHTGEKPFKCTVCPLSFTQLPHMKTHLIKIHNQDTPYKCKKCHTFFKMKKQVDSHIKNCKVGERELTFEEKIQASVQYEEVKIETPMSLSRMRYLLALLLTMVANKKSLKFLGFNKRPIEELLLESIEAIGKTPCKDESIAPIIRLKTNIQTLLDGTIPAYQMDKFKKEHKTTEEILEILTDDKKNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00119870;
90% Identity: -
80% Identity: -