Cpec020389.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596376.1:3912302-3925768[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.01 0.57 11.1 0.0 2 23 68 90 67 90 0.95 2 13 0.83 47 5.1 0.1 2 23 115 137 114 137 0.95 3 13 0.26 15 6.7 0.7 2 23 188 210 187 210 0.93 4 13 0.26 15 6.7 0.7 2 23 258 280 257 280 0.93 5 13 0.5 29 5.8 0.8 2 23 305 327 301 327 0.84 6 13 0.023 1.3 10.0 0.6 2 23 353 374 352 374 0.96 7 13 6.3e-06 0.00036 21.2 0.2 1 23 378 401 378 401 0.96 8 13 0.98 56 4.9 2.3 1 15 407 421 407 427 0.85 9 13 0.33 19 6.4 0.3 1 23 435 458 435 458 0.83 10 13 0.0004 0.023 15.5 0.1 2 23 466 488 465 488 0.95 11 13 0.00064 0.037 14.9 1.1 1 23 493 515 493 515 0.97 12 13 1.4e-05 0.00081 20.1 1.3 1 20 521 540 521 543 0.95 13 13 3e-05 0.0017 19.1 2.9 1 23 549 572 549 572 0.98
Sequence Information
- Coding Sequence
- ATGTGGCGAAAGAATTGTGTCATGGAACTTGAAAAAACTGCACATGAAGCAGGTTCACGGGGTTACCGAAGAGCCTCACACCTGTCCCGAATGTGGCAAGACTTGTACGGGAATTTCAATGCTTCTGCGGCGAGACGCAACGCTGGCGTTATTGTGAAACATTCGACAGTGTACCcgttcagacttcctctaaatTGTATAGTTTGTGTGTTCTGCTACGAAAGTTACGAAGAACCCGCTGAATTTAGGAGGCATATGAATATAGAACATCAGACGTTCTTACTCCGGAATGCTTTCGCACATTGCGCTGAAGGTTTTATAAAAGCAGACTGTTCGGAAATACAATGCCGCATCTGTTCGAAACCGAGCGGCAGCCTCGAAGAAATAGCGTTACACTTGAAAAAGGAACACCTAAAACCATTAGTTATGGCAGCGCCCTTAGGGATAGAGCCTTTCAATTTTAAGCTGGATAAACTTAGATGCGCGATTTGGAAGCGCAACGCCGAAATAATCGTGAAACATTCGACAGTGTACCCGTTCAGGCTTCCAGAAAATTGTATCGTCTGTGTGTTCTGCTGCGAAAGTTACGAGGAGTCCTCGGCATTTCGAAAGCATATGGATACCGAACATCAGACGTTTTCTCTTCGAGTAGCGTTCGCTCATTGCACTGAAGAATTGAAATACCCGAATGCATCTGCAGGGAAGCGCAACGCCGAGATAATCGTGAAACATTCGACAGTGTACCCGTTCAGGCTTCCAGAAAATTGTATCGTCTGTGTGTTCTGCTGCGAAAGTTACGAGGAGTCCTCGGCATTTCGAAAGCATATGGATACCGAACATCAGACGTTTTCTCTTCGAATAGCGTTCGCTCATTGCACTGAAGGTTTCGTAAAAGCCGACTGTTCGGATATCCGATGCCGCATATGTTTTAAACAGAGTGAGAATCTCGAAGAAATAGCAATTCATTTGCGAAAAAATCATTGTATCATCACAAAAGCGTTGGATTTAACAGCTCCATTAGGAATTCAGCCTTTCAATTTTAAGCCGGAAAAGCTTCGGTGCGCCATTTGCCAAGAAAAAGCTTACAGCCTTCGACAGCTCAGTCGGCACACGCAGACGCATTTTCTAAGGTTCACCTGTGAGTCTTGCGGAAAGTCCTACGCTACTAATACCGCGTTGCAAGTCCATATTAGGGACTCGCACTTGAAATCAAAAGAACACCATTGTagaaagtgtaaaaaaaaattcaattcgGCGGATGAAAAAAGATTTCATTTGCAGGAGTCTACAAGATGCCGCAAATACGTGTGCAGCGTCTGTGGTGACCGGTTTACGTCTagttacattaaattattacacaTGAAAGAGGCTCACGGGATCGCGAAGAAGCCTCAAGTTTGTCCCGAGTGTGGTCAGGTTTTTACAGAGAAAAACACATTTATAGATCATTTCAAAATTGCACACACTAACGACAATTTCGTTTGTTCCTTCTGTGGTCAGAAGTATGTGTCAAAAAAAGATTTTGAAGACCACCGggtcactcatacgaacgaaaaaCCTTACCAGTGCTCGGTATGTTCAAAATTGTTTTCTAGAAAGAAGAATTTAACTCAGCACATGTGGATACACAGCGAGTACAAAAGATTCGAATGTAAGATCTGTAACAAAAAGTTTAATCAAAGAGTCAGTTGGAAATCCCATTATAAAACAAATCACCCAGAGATAACAAATTTTGAGCAGGAGTACGATAATAATGCCAAATTGTGTACAGTCCGTTTCAAAGAAATGTCTAAATGTGGTTATttaccagatatgtgcgagaaTGCTGAGCAGAGAGAAAATCCGTAA
- Protein Sequence
- MWRKNCVMELEKTAHEAGSRGYRRASHLSRMWQDLYGNFNASAARRNAGVIVKHSTVYPFRLPLNCIVCVFCYESYEEPAEFRRHMNIEHQTFLLRNAFAHCAEGFIKADCSEIQCRICSKPSGSLEEIALHLKKEHLKPLVMAAPLGIEPFNFKLDKLRCAIWKRNAEIIVKHSTVYPFRLPENCIVCVFCCESYEESSAFRKHMDTEHQTFSLRVAFAHCTEELKYPNASAGKRNAEIIVKHSTVYPFRLPENCIVCVFCCESYEESSAFRKHMDTEHQTFSLRIAFAHCTEGFVKADCSDIRCRICFKQSENLEEIAIHLRKNHCIITKALDLTAPLGIQPFNFKPEKLRCAICQEKAYSLRQLSRHTQTHFLRFTCESCGKSYATNTALQVHIRDSHLKSKEHHCRKCKKKFNSADEKRFHLQESTRCRKYVCSVCGDRFTSSYIKLLHMKEAHGIAKKPQVCPECGQVFTEKNTFIDHFKIAHTNDNFVCSFCGQKYVSKKDFEDHRVTHTNEKPYQCSVCSKLFSRKKNLTQHMWIHSEYKRFECKICNKKFNQRVSWKSHYKTNHPEITNFEQEYDNNAKLCTVRFKEMSKCGYLPDMCENAEQRENP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -