Cpec020421.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596376.1:4192970-4202671[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00057 0.033 15.1 0.8 1 23 27 50 27 50 0.94 2 16 6.8 3.9e+02 2.2 0.1 2 23 77 99 76 99 0.89 3 16 0.0015 0.085 13.8 0.3 1 23 147 169 147 169 0.94 4 16 0.13 7.7 7.6 0.1 2 23 190 212 190 212 0.92 5 16 0.0059 0.34 11.9 0.8 1 23 218 241 218 241 0.97 6 16 2.6e-05 0.0015 19.3 0.5 1 23 247 269 247 269 0.98 7 16 0.00019 0.011 16.6 0.4 1 23 275 297 275 297 0.97 8 16 0.14 8 7.5 6.8 1 19 442 460 442 465 0.94 9 16 4.4 2.5e+02 2.8 0.3 1 11 563 573 563 577 0.90 10 16 0.015 0.86 10.6 1.6 1 23 640 663 640 663 0.96 11 16 0.017 0.95 10.4 0.1 2 23 690 712 689 712 0.95 12 16 0.2 12 7.0 0.4 1 23 733 755 733 755 0.97 13 16 4.3e-05 0.0025 18.6 1.3 1 23 759 781 759 781 0.96 14 16 0.0034 0.2 12.6 0.3 1 23 786 809 786 809 0.94 15 16 0.043 2.5 9.2 0.5 2 20 817 835 816 839 0.87 16 16 0.013 0.76 10.8 1.4 3 23 848 869 846 869 0.94
Sequence Information
- Coding Sequence
- ATGAGCAGAAAACGTAGCATCACGCAAGTGCTGCTATGCTCAACAGCAACACCGGTATGGTCCCATTGTAAGTTTGGCTACAAATGCTCTTACTGCGAGATGAAATACCCTACACCTGACAGACTCAAAAAACACACTCTGGAAGAACACGACGATATTGCAGAAGCGCGTTTCCTCAGAACGCTGATTTTCCACAACGTAGTTGTTAAACTGGACATAACAGCGTTGCGCTGTAAGCTTTGCATAGATAGTTTCGACAGCTTGAAAGCTCTGATCGAACACCTCAACGGAACTCACAAGAAGCGGATTTGCGAAGACGTCGACAGCATGTGCCTCCCATTCAAATACATATCAGAAACGTTGATCTGTGGCATTTGCTTTAGCGAGCAGTTCACGTTTAAGAGGCTCGTACTACACCTGAATATGCATATGAAGGTTTATAGATGCGACATTTGCAGTGAAGTCTTTACGAGTAAATCAGGCGTTCTGCTTCACAACACTATGCATACCACCACACAACCGAAGAGACCTAAGAAAACCAATCAAAGCGTGGCATTACTGCCAGCCGTTTGCGTACAATGCGGGGAGAGATTCCCCACTAGGTACATTATGAATAATCATATCTCAAACGTCCACTTAGCAGATACTGAATATAGTTGCAATGCTTGTGAGCGAGTGTTCCAGTTGAAAAAACAATTGCAACTACATGTCAAAAGGGACCATTTAATGGAGCGTCCATTTGAATGCGACATATGCGGTAAAGGGTTTTTCACCAAAGTAAACAAGATAAAGCATCAAGCTACACACTCGAGTCATAAGAAGTATTCCTGTGATGTGTGCGGGAAACAGTTTAAGTTTAGGTCGTCTCTGGGACCTCATATGCAGATTCATAGCGATGTGCGAAGGTTTAAGTATATCCTGAGCAGcagcgatgatgatgatgaaaacacGCCACTTGCCGCGGAAAAAAGCATAACACTCTTCAGAAAAGTTAATTTCTCATCCTTCATCTCCATACCGCCGGGTGGAATCCCCGAAAGcacaaaaacccaaaaaaagaaaaaaccccTCGCTCAAAAAGTCCAAAAACGTAAAATATCTGAAGTTATCGAAGAAAAACCACCGGCGAAAGTTGAGCAAAAGCGCACACTACCGAAACGCAAGAGCGCCGGTTCCAAACGTAAGAACACCGAGCAAAGAGTCAAGATACCGAATCCTAATCCGAAGACTAGGCTCACGGAAATGGACTGGCACCTTGACAACATACGGACTATACTGAACTGCTCGAATGCTACACCAATCCACGCTAAAGAAGACGGCGGGTACACTTGCAGTTACTGCTTCCAGAAGTTCTCAAAGCTCACCGAACTAAAGAAACATTGCTTCTCCAACCACAAGAAAGGCAAGCCGGATTTCTTGAAAATGAGACCGGGAAAGATCCTGTCCAAGCACATCGTTTACCTGGACATTTCGTCACTCAAATGCCGGGTCTGCCGCTCCGATATCGACAGCCTCGAAATGTTAATGGAGCATTTGCAGAACACTCACGAGGAGACGATGCACCTGGTTATAAAGAACCAGATAATGCCTCTACGTGTGATGGACGAGAGACTACGCTGTGCCGTGTGTGCTGTTGAAGTTGACTTCGACAAGGTAGCGGACCATATGAGCCAACATTATCGGAACTATGTCTGCGAGTTCTGTGACGCTAGCTTCGTCATTCGCTACGGAGTCAGCAAGCAGGTCGATAAACGTAGCAAGAAgaaaaagattataattatcCAGCCAAATGCGGAGCAAGTGAGACTCAAACTCGTCACCAAGAAGTTTGACGAGTTGAATAAGCACCAGATGAACATAAGGACGATACTGCTGTGCTCGAACGCGACGCCCATCAGGAAGTACGGTGGCGTGGGCTACATGTGCTGCTTCTGTGTGCGGGAGTTTCCTGAACCAGCGCAGCTGAAGCAGCACACAAGACAAAGTCATGACGAGTCAGCAATATCCGGATTCACAGCATCCCAGACAATGGCTAGTTTCGTCGTGAAACTAGACATAACAGATCTCAATTGCACACTATGCGATACACCCTTTACAAACATCGAAGACATTACCGAACATCTCACAACCGTCCACAACAAAACCTACCACAACGACATCAAAAGCCACATAATCCCGTTCCGTTTCTCCGAGTCATTCCGCTGTGTGAATTGCGCGATACAATTCAGCAACTTCAAGGTTCTGCTCGAACATATGAGCGAACATTTCAGGAACCACATCTGTGATATTTGCGGTAAAGGTTACGTGAACAAAGTTCAGTTTACAACACACATGTACAGGCATAATAAAGGGGTCTTTGCTTGCTCGGTTTGCTCAAAGGTGTTTGATACGCGGGTGAAATGGCGGGAACATGAACGCGCTACTCACGTGTTGATGAATAAACGTAGTAAATGTGGGTATTGTGGGGAGCGTTTTAAAGATTATGCTAAGAAGAAGTCGCATGAGGTAGAGGCACATGGGGCGACGCGGGTTGTGCTGCATTGCCGCGCGTGTGAGAAGAGTTTCGGAGACCAGCGAGCGCTCAGCGTACACACCAAGACTTACCATCTGATGGAGCGGAAAGTTCCCAAGTGA
- Protein Sequence
- MSRKRSITQVLLCSTATPVWSHCKFGYKCSYCEMKYPTPDRLKKHTLEEHDDIAEARFLRTLIFHNVVVKLDITALRCKLCIDSFDSLKALIEHLNGTHKKRICEDVDSMCLPFKYISETLICGICFSEQFTFKRLVLHLNMHMKVYRCDICSEVFTSKSGVLLHNTMHTTTQPKRPKKTNQSVALLPAVCVQCGERFPTRYIMNNHISNVHLADTEYSCNACERVFQLKKQLQLHVKRDHLMERPFECDICGKGFFTKVNKIKHQATHSSHKKYSCDVCGKQFKFRSSLGPHMQIHSDVRRFKYILSSSDDDDENTPLAAEKSITLFRKVNFSSFISIPPGGIPESTKTQKKKKPLAQKVQKRKISEVIEEKPPAKVEQKRTLPKRKSAGSKRKNTEQRVKIPNPNPKTRLTEMDWHLDNIRTILNCSNATPIHAKEDGGYTCSYCFQKFSKLTELKKHCFSNHKKGKPDFLKMRPGKILSKHIVYLDISSLKCRVCRSDIDSLEMLMEHLQNTHEETMHLVIKNQIMPLRVMDERLRCAVCAVEVDFDKVADHMSQHYRNYVCEFCDASFVIRYGVSKQVDKRSKKKKIIIIQPNAEQVRLKLVTKKFDELNKHQMNIRTILLCSNATPIRKYGGVGYMCCFCVREFPEPAQLKQHTRQSHDESAISGFTASQTMASFVVKLDITDLNCTLCDTPFTNIEDITEHLTTVHNKTYHNDIKSHIIPFRFSESFRCVNCAIQFSNFKVLLEHMSEHFRNHICDICGKGYVNKVQFTTHMYRHNKGVFACSVCSKVFDTRVKWREHERATHVLMNKRSKCGYCGERFKDYAKKKSHEVEAHGATRVVLHCRACEKSFGDQRALSVHTKTYHLMERKVPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -