Cpec021026.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596377.1:5638576-5659626[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00018 0.011 16.6 1.7 1 23 274 296 274 296 0.98 2 11 1.4 79 4.4 1.5 1 23 303 325 303 325 0.95 3 11 0.076 4.4 8.4 1.4 1 23 329 352 329 352 0.98 4 11 0.19 11 7.1 3.5 2 23 360 381 359 382 0.93 5 11 1.9e-07 1.1e-05 26.0 0.6 2 23 388 409 388 409 0.98 6 11 0.0003 0.017 15.9 6.8 1 23 415 437 415 437 0.98 7 11 0.0008 0.046 14.6 1.8 1 21 443 463 443 468 0.93 8 11 0.016 0.94 10.5 0.2 1 23 476 499 476 499 0.96 9 11 0.89 51 5.0 0.0 1 23 505 527 505 527 0.97 10 11 2.4e-06 0.00014 22.5 1.3 1 23 539 561 539 561 0.98 11 11 0.0054 0.31 12.0 0.1 1 23 567 590 567 590 0.93
Sequence Information
- Coding Sequence
- ATGGAAACCTCGCCAGGTGATAAAGCAGACTCCAAAGTAGACTTTGATGTAGAAAAACAGATCTGCAGGTGCTGTCTTACCACAGAAAAACGAATGCAAAGTGCTGTAAAGGTGCAGCATTACTTTATGGAATTAGCCGGAAtaaatGTGTCAGTGTCGGATGGGGTGCCGCAGTGGATCTGCTTCGAGTGCTACGCCCTCATGCGGAAAGCTGTCGCCTTCAAGTACAAGATGCTGCAGGCACACAATATGCTGTACCAATACCTCCTGAGATGTGCTCCGTTTCCGATAGAGCCGTGCGACGCGGAGCTGGCTCGGTACGCGTCTCCGCACCTCAGCGCCACGCGCACACTCACATTCGACACCTCCAAGTCTAGAGCCGGCTTCCACAGACTTCTACagCAAGAGAAGCAGGTCCTCAAGTCTGAGCTGCAGGATGTGCCGCTGCCGAGCGAGGACCCTCGCTCCGGGGACCTGGTGAAGCTGGAGGACCCTGTCTCAGACCTGGAGGATGACTTGCCTCTGGAGGAGTTCagGTCTGCTAACATAGAAGATGTATTGATAGAGGAAGTGAAGAACGAACCGGAAGTGAAACGGACCAAGAAGGACAAAGATACGAAAAGCAGGAAAAGGAAGAAATGCAGGATAGATAACTCCCCAAAGAAATTACCTGAAGAGTTAGAACCGGCCAAAGAGAAGAAGCACACCATCAGGAAACCCATTGAAATAGACCCTGAGAAGATCAGAATCATCACCCTGAACCCTGAGGAGCAGATACGGCAGAGAGAAGAGGAAAGCAAAGCTCTAGTGAAATTTCCATTCCAATGCGTGCTCTGCTACAAGGGGTTTAACTTCGAGTCGAAACTACAGAACCACATGTTGAAACATAGCCCTTCGCGGGGTCAGTACACATGCAAGCTGTGCTCCATGCACCTGCCCACCATGTACTCTTACAGCGTGCACTCGCTCATACACACGCGCCGGTACGAGTGTGTGCAGTGCGGCCGGAGGATGATCGACCGCGCCTCCATATACCACCATTACAGAACACAACACGAAGGCATCACTACTCTTATCACCTGCGATCTGTGTGGGAAAGTATCGAGCAACAGCAAAACTCACCGCGGCCATCTGCGCAACCACCACTCCGGCGAGCGACCCAAGTGCGACCAGTGCGGGAAGAGCTTTGTGAACAAGGACTCTCTCACCGAGCACATGCAGATCCACGAAGGCGTGAAGAACTACGAGTGCTCCGTGTGCGGCAAGCGGTGTCGCACGCGCACGCAGATGAAGCACCACCAGCTGAAGCACTCCACCGCCAAGGAGTACTACTGCGTCGAGTGCGACGTCAGATTCAAGTCGGCGCACAGTTTGCGTCAGCATCTCACAAAGAGTTTGAAGCACAAAGATGTCAATagttttacGTTCGAGTGCTTGCGGTGCGACAAGCGCTTCGAGAGCTCCTTGGCGCGCGAGGCGCACGCGCGCGTGCAGCACGACGGCGTGCGCGCGTACCCGTGCCTCGCGTGCGGCGCCGCGCTCGCCTCGCCTGCCTCGCGCGCCAAGCACGCGCGTCGCCACCTGCAGCCGCGCCCCACCCAGCCTAGCGACCGACACGTCTGCGACACCTGCGGGAAGGCCTTCcggGGTAAGAGCGTGCTAACGAACCACCTGCGCACGCACACGGGCGAGAAGCCGTTCGCGTGCGCGCTGTGCGGCCGCGCCTTCAGCCAGCGCACCGCGCGCGCCACGCACGTCAAGCTGGTGCATCTCAAGATACGCAAGAACAAGGCCATCAAAGACGAAACACCAGCTGTACCTCAGGAGCCGAAGCAAGACCTGTTCCCGAAAAACGAGCCGCAAGTTGTATACGACGGCTGGAGCAGACCTTGCGACGTGTTCTACGTCACCGCGGGACCTTAA
- Protein Sequence
- METSPGDKADSKVDFDVEKQICRCCLTTEKRMQSAVKVQHYFMELAGINVSVSDGVPQWICFECYALMRKAVAFKYKMLQAHNMLYQYLLRCAPFPIEPCDAELARYASPHLSATRTLTFDTSKSRAGFHRLLQQEKQVLKSELQDVPLPSEDPRSGDLVKLEDPVSDLEDDLPLEEFRSANIEDVLIEEVKNEPEVKRTKKDKDTKSRKRKKCRIDNSPKKLPEELEPAKEKKHTIRKPIEIDPEKIRIITLNPEEQIRQREEESKALVKFPFQCVLCYKGFNFESKLQNHMLKHSPSRGQYTCKLCSMHLPTMYSYSVHSLIHTRRYECVQCGRRMIDRASIYHHYRTQHEGITTLITCDLCGKVSSNSKTHRGHLRNHHSGERPKCDQCGKSFVNKDSLTEHMQIHEGVKNYECSVCGKRCRTRTQMKHHQLKHSTAKEYYCVECDVRFKSAHSLRQHLTKSLKHKDVNSFTFECLRCDKRFESSLAREAHARVQHDGVRAYPCLACGAALASPASRAKHARRHLQPRPTQPSDRHVCDTCGKAFRGKSVLTNHLRTHTGEKPFACALCGRAFSQRTARATHVKLVHLKIRKNKAIKDETPAVPQEPKQDLFPKNEPQVVYDGWSRPCDVFYVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -