Cpec020806.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596377.1:3052374-3062661[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.016 0.95 10.5 1.8 2 23 231 252 230 252 0.97 2 11 0.1 6 7.9 4.0 1 23 259 282 259 282 0.97 3 11 0.017 0.99 10.4 5.6 1 23 313 336 313 336 0.98 4 11 0.00055 0.032 15.1 0.4 2 23 341 363 340 363 0.95 5 11 0.025 1.5 9.9 1.1 3 21 381 399 380 404 0.93 6 11 9.3 5.3e+02 1.8 1.2 3 23 414 434 412 434 0.82 7 11 2.5e-05 0.0014 19.3 0.1 2 23 454 476 453 476 0.96 8 11 4.2e-05 0.0024 18.6 0.1 2 23 489 510 488 510 0.97 9 11 4e-05 0.0023 18.7 0.8 1 23 516 538 516 538 0.98 10 11 1.6e-05 0.00092 19.9 2.6 1 23 544 566 544 566 0.98 11 11 5.6e-06 0.00032 21.4 1.7 1 23 572 595 572 595 0.97
Sequence Information
- Coding Sequence
- ATGTGTGATTTTCATGTGTGTCTGGTGTGTTTAACTGATAACATAAAAGTGTACTCAATTGTTAACACACCACTTCAAGAATTATATGAAAGCCTCACGAGTACAAAGctatTAATTCAAGATGGCTGGCCGGCCACAGTGTGTTATATCTGTGCCTCTCAGCTTCAGAAATGCCTTAAATTGGTGGATGTGGCACGAAATTCCCAAAAGCTACTTATACAATTCTACCACAGCGGCATTCCGCTGTCACAGGAAACAGTGTTAATGCTCGATAGAAAAGCATGCAACTACTCGGTAACTCCTACAGAATCCATATCTCTCCTTGATGAATGTAAACCAACCAAAGCAAACTCTATTATAAAAGATGAAAATGATGTCATCTCTATTATAAAGGATGAAAAAGAAGAAGTGACATTATTGGACGATAAAATTAGTGAAAATGGAAAAGATGAacctgacattgacattgaacCTGACATTAGCTACAATAATGACAATGTCATGTCATCAGACTCTGAAGATAATATACCTCTTACATCACTTAAAGTATCCAAAAGGATTAAGCACCAAAAACGAGGATATCAGAAAGATATTAAAATAGATGCAACAGAAGTATATCTAACAAAGGAACAGCAAAAACAAGAAGTATTTGCGCGTTCTAAATCGTACAACTACATCCACTCACCGTTAAAATGTCACCTGTGCTACAAGGGATTTGTCAGCGATGCCGCATTTAGCAACCACACGCAGAAACATGACGAGAGTAGCGGTGCATTTAAGTGCGATGTGTGCGCGCTGTGTTACCACAGTGCGCGGCTCTTGCGATCGCACACTACAACATCGCACAAGAGATGCTTCAAATGCAATAAGTGCGAGCATACCTCTCATACCACGAACCAAGCTCGGGATCACGACAAATGGCATGATGGGTTCACCTTCCAGTGTCAACTTTGTGGACAAAAATTCAGgAAAAGAACGTCTCATTTGACGCATATGCGCAAAAACCACTTGACTGAGAGTGTGTGCGAGCTATGTGGATACAGTTTCGTCAGTAAAAACGGACTGCTACTTCACAAGAACAAAACGCACAGGCGGGACTTAGAGGAAGAAACGCCGACTGTGACGGCTGAGCAGAGGTTTTGCTCAGTTTGTGGAATACAGTTTGCTCGCTTGAAGGCGTACCATAGACATCTATTGAGCTCCTTTAGACACGTGCAAAGTGTCAATAACAGtACGCAGTGCATTATTTGCCAGCAGAATCATCCGGACCACGGATCTCTTGTAGAACACATGAAGattcataaaaaaatgcttcTATATCACACGTCAGTTAATCCCAAGACAACACCGACTCCCGTACCTTGTGATGtgTGCGGCGTGGTATTCAGCAGTCGAAGTCGGCTGACCGCTCACGTGAGAAGCACACACCTCCCCGTGAAGCCCGCCAAGCCGAGCAAGCAAGTTGTGTGCGAGCTATGCGGGCGACAGTTCAAGTCAGCAACAGCCCTGGCGTACCACCTGCGGCGTCACCGCGGCGAGCGGCCGTTCCCCTGCGTGCAGTGCGGCAAGCGCTTCACGGACAGCCGCCAGCGCACCATCCACGCGCGCACGCACTCCGGACTCAGGCCCTACGTCTGCCGCACCTGCCAGCGCTGCTTCGCGCAGAAACCTGCGCTCAACCGCCACTACCGGGTGCACACTGGTGCCAAGCCGTACGCCTGCCAAGTCTGCTCTAAGTGCTTCAGCCAGTCCAACTCGTTGAAAATACACATCCAATCGGTGCATCTTAAGATGCCTCAGCAGCGGAGGCAGAAAGCCGCCGCGCCTAAAAATGATTGTCACGAAATAAATACAGAGAGTTGA
- Protein Sequence
- MCDFHVCLVCLTDNIKVYSIVNTPLQELYESLTSTKLLIQDGWPATVCYICASQLQKCLKLVDVARNSQKLLIQFYHSGIPLSQETVLMLDRKACNYSVTPTESISLLDECKPTKANSIIKDENDVISIIKDEKEEVTLLDDKISENGKDEPDIDIEPDISYNNDNVMSSDSEDNIPLTSLKVSKRIKHQKRGYQKDIKIDATEVYLTKEQQKQEVFARSKSYNYIHSPLKCHLCYKGFVSDAAFSNHTQKHDESSGAFKCDVCALCYHSARLLRSHTTTSHKRCFKCNKCEHTSHTTNQARDHDKWHDGFTFQCQLCGQKFRKRTSHLTHMRKNHLTESVCELCGYSFVSKNGLLLHKNKTHRRDLEEETPTVTAEQRFCSVCGIQFARLKAYHRHLLSSFRHVQSVNNSTQCIICQQNHPDHGSLVEHMKIHKKMLLYHTSVNPKTTPTPVPCDVCGVVFSSRSRLTAHVRSTHLPVKPAKPSKQVVCELCGRQFKSATALAYHLRRHRGERPFPCVQCGKRFTDSRQRTIHARTHSGLRPYVCRTCQRCFAQKPALNRHYRVHTGAKPYACQVCSKCFSQSNSLKIHIQSVHLKMPQQRRQKAAAPKNDCHEINTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -