Cpec002517.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596350.1:7165013-7172387[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.048 2.8 9.0 1.1 1 23 190 213 190 213 0.94 2 12 9.4 5.4e+02 1.8 0.3 6 23 223 240 221 240 0.92 3 12 0.076 4.4 8.4 4.0 1 19 273 291 273 296 0.90 4 12 4 2.3e+02 2.9 1.7 5 23 305 323 303 323 0.94 5 12 0.00065 0.037 14.9 0.5 3 23 331 351 329 351 0.96 6 12 1.9e-05 0.0011 19.7 2.1 1 23 359 383 359 383 0.96 7 12 0.0021 0.12 13.2 1.6 1 23 392 415 392 415 0.96 8 12 0.00028 0.016 16.0 0.2 1 23 421 443 421 443 0.97 9 12 3e-07 1.7e-05 25.4 2.4 1 23 449 471 449 471 0.98 10 12 0.0014 0.079 13.8 1.0 1 23 476 498 476 498 0.98 11 12 3.7e-06 0.00021 21.9 4.2 1 23 504 526 504 526 0.97 12 12 0.00099 0.057 14.3 2.1 2 23 533 555 532 555 0.95
Sequence Information
- Coding Sequence
- ATGGCCATGAAAGACCTGTGTAGACTATGTGCTAAAGAAGATCTGTTCTCAAAGGATCTATTACTGGAAAACAACAAAGGTATCCGGAAAATGGTACAAGATTTTATTCAAATCATTATATATGATAGTGATGATTTGCCCACAAGAATATGCTTGAACTGTGAAGAGAAAATGGTCACATTTCAATTGTTTGTATTGGAATGCTACAAAGTTCAGGAgactttacaaaaaatatgcagtgaaaaaaatgaaaatattgtaGTAAAATATGAAACTAGTACAAATTTAGATGCAACAATAATTAAGTCTGAGGTAAAAGATGAAATGACAGCTGAAGAAATAGTCAGTGCACTAAACAATGAAGAAACTCTTGTAATATTTGGAGATGATAACAATGATTgtcacaatgatgatgatgatgatgatgatctagaTGATGTAACTATTGCTACTTTAAAAGAAAttaagtcaagtcaaaataaCCGAATAACTGAATACAATGTTGACACTGAAGCACTCAATCAGATACTGaaatcacctagctttaaagtCAAGGATCTTGTCAAGTTTGACTGCGTTTTTTGCAAGGAAAACTTGAAATCATGGTCCAGTTTGCAAGGTCACTACACTAAACGGCACAAAAGTGAGCCGTTGGTGCTATGCTTGTGTGGTTTTGAAATCCGATCGAAAAGTGTGCTATACAAACATGTATCCGAGCATAAGTTAGAAAGTACAAAGTTAAGAAAAGACTTGTGCGAGGAGGAAAAACAAGAAGATCTCAAATATTCCAATCTCAATGTTAAAAATTTTGTCAAGTTCACTTGTAGTGAATGTGAAGTAGAATGCTCCAGTTGGTACACATTAAAGGCACACTGTGAAAGAAAGCACGGCATCTCACCTGTTGTCCAATGCAAGTGTGGCATCACCCTTAAATCTAAATCCGTTATGTACAAACACATCCACGATCATAAAAACCCTAATATTTTAGCATGTGACAAATGTCCGAAAGTATCGAAATCTCTAACAGCTCTAAATAAGCATAAAATGAGGCATGTACCGAAAGCAGAACGAAAATTCTGTTGCAATCTTCTCGAATGTGATAAAATATTCACTACGAAAGATGCTTTGAAATCGCATGAAAGATCACATATTCCAATAGAAAATAGAAAGATATACCATTGCGACGTTTGTAATTTgaaGTTTACGACGCGTTCGTCCGCTGCGTCGCACAAGAAGGTGGTGCACGAGAAGGTGAAGGGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGGCAACACCGCGCGATACACAGCGACGACAAACCGTTCGTCTGCAACAAGTGCTCTAAACCTTTCAAGACGTATTCGAATCTCAAAACCCATATGGACACTCACGGCGACACGGCCTACGAGTGCTACATCTGCCGCCGCATCCTCAACAGTCGCCGCACGCTCCGCAAACACTTGCTGGTTCACGAGGACAAGTGCCGGCACGTCTGCTCCTACTGCAACAAGGCTTTTAAAAGGCGGCAGACTTTGAAGGTGCACATGTACACTCACACCGGCGACAAGCCGCTCACGTGCAAGTGGTGCGAGGAGCGGTTTGCATACGCGTCCACTCTGCGCTCGCACCGGCTGCGCTGCCACCCCGACAAGATGGTGCAGCACGACTACAACTCATCATATGTCGTCATAAACCATaattacattaaaaacaacGTGTCAGCCGTAAGTGTCCCAGTAGCTAAAAACGAAGTGGAGGCTATGTAG
- Protein Sequence
- MAMKDLCRLCAKEDLFSKDLLLENNKGIRKMVQDFIQIIIYDSDDLPTRICLNCEEKMVTFQLFVLECYKVQETLQKICSEKNENIVVKYETSTNLDATIIKSEVKDEMTAEEIVSALNNEETLVIFGDDNNDCHNDDDDDDDLDDVTIATLKEIKSSQNNRITEYNVDTEALNQILKSPSFKVKDLVKFDCVFCKENLKSWSSLQGHYTKRHKSEPLVLCLCGFEIRSKSVLYKHVSEHKLESTKLRKDLCEEEKQEDLKYSNLNVKNFVKFTCSECEVECSSWYTLKAHCERKHGISPVVQCKCGITLKSKSVMYKHIHDHKNPNILACDKCPKVSKSLTALNKHKMRHVPKAERKFCCNLLECDKIFTTKDALKSHERSHIPIENRKIYHCDVCNLKFTTRSSAASHKKVVHEKVKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCNKCSKPFKTYSNLKTHMDTHGDTAYECYICRRILNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCEERFAYASTLRSHRLRCHPDKMVQHDYNSSYVVINHNYIKNNVSAVSVPVAKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00119862;
- 90% Identity
- -
- 80% Identity
- -