Cpec019229.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596374.1:1043435-1070359[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.096 5.5 8.1 0.0 1 23 428 450 428 450 0.96 2 11 0.099 5.7 8.0 0.5 1 23 462 486 462 486 0.89 3 11 8e-06 0.00046 20.9 2.6 1 23 492 514 492 514 0.98 4 11 3.7e-05 0.0022 18.8 0.9 1 23 521 543 521 543 0.99 5 11 0.00024 0.014 16.3 0.2 1 23 549 571 549 571 0.93 6 11 5.4e-05 0.0031 18.3 0.1 1 23 577 599 577 599 0.97 7 11 6.1e-06 0.00035 21.3 1.5 1 23 605 628 605 628 0.96 8 11 3.7e-06 0.00021 21.9 1.7 1 23 634 657 634 657 0.95 9 11 0.00038 0.022 15.6 1.6 2 23 664 685 663 685 0.97 10 11 3.4e-05 0.002 18.9 1.1 1 23 691 713 691 713 0.97 11 11 0.03 1.7 9.6 0.0 1 21 719 739 719 740 0.96
Sequence Information
- Coding Sequence
- ATGTCCCAAACCTGCCTTGTCTGCAATAAACAAGGACCATTTGGGATACATGACATACAAAATGTGTTTGAtgaaaatAACACATTCCCAAGCGAAAGAAAACTTATTGGTGTATTATTTGAAATCATTGACAATAAACTGGACGAGGAGAAAGTATCTACTAAGATACTGTGCAAGGAATGCTACAAACTATGCGAAAACTATGACCACTACAAAACAAAtATGGCCATCTTGAAAATGAAATTATCAGAGCTTTATTACACAACACAAGGAAAGACTTCGCTTACACAAATGGCTGTTTTGGAACCTATAAAGATTATTCCTAAGAAAGAGACGAAAGgaATGTTCGTAGTACCAGCATCAAAACTTCAACCTTTACCTGCGGGTTTTCAACTGAATTTGGGGAAAATTGCAGCCATGGCCAACCCTAATGTACTACCATCAAAACCGGTGAACCTTAAAATGACAATCGGCAACTCTGTCCTCACCCAAAGCCTTACCACGTCAACTGTCAAACTGGTCAAGCCCAGCGAACTATCAGCCGACGCAAACACTATCAAAATCGGTCAAGTCGGCCAGTGGAATGTCAGCAGCCTGCCGAATGAGATATTCTCGAACGGACACGAGAGCGATAATAATGATGCGAATAATCATCAGATGGAGATTGATGAAGgTTCCAAACCTACACCAGTGACACAAAGTGATTCCATTTTGATTGACGCTTCAAGTATAAAGACGGAAAACACAGAGGGCGCCCGGTACATGAACTCTGAAAACTTTGAATTACTTCTCGAAGGTCaagatgatgaagatgaagacgATGAACAATCGCatacAATAGTGGTAGACGGCAACAACTCAATATTACAAATGATGTCGGGCCAAAAGCTAGTCTACGAAAATGGTGAACTATCATTCGTGATGagagaaaatgatgatgatgaagatataGATGAACAGGATTCAAACGATGAGGAGTCTCAAATAGAGTTACAAGTGTCAGGAGACGAAGAAACTGCCAACGCTATAATAGCCGCCGCCCAAGAACAAGGCGGTGCATTTATAAAAGTGGAAAGTGGCGAAATGTACCGAGTGAAGTCGGTTCAGAGCAAACCGTCTGAGTCTGTGTTACCGGACACCGCGACGCAGCTCGTGGCGCGCGACGGTGACCTTTACCGATGTCTCGTGTGCGATAACCTGAGAGGTTCAGTGGGGGTGTCGTACACGGGGAGCGCGCGCGACACGGTGCAGCACATGAAGCGGCAGCACTCCGCGCAGGTGTACATCTGCGCACTCTGCGGCATCATCATGCGGAGCCGAGCCGACTATACCACGCACATGGCGGAGCACAGTCGGAGGCTGGGGGCCCCTAAGACGCGGCTGTACGCGTGCACGGCGCCGGCGTGCAACAAGAGCTACAACTCGCGCACGTTGCTGCACGAGCACGGCAACCTGCACGCCGGCACGCGCCCCTACGCGTGCCACATCTGTGACAAGACCTTCGCCTCCAAGTACACCAGGCAGGCGCATCTCAAGACGCACCAGGTCCGTCCTCGTCCGTACGAGTGCCAAGTGTGCGGCAAATCGTTCCTCTCGCGTCAAAATCTGATGCAACATGAGAAAACGCATCTCGGGATCAAGAGTTTCATCTGTAATATATGTGAGAAGGCATTCGGCACGCAGCACAGCCTAGAAGTGCACGGCGTGGTGCACAGCGGGCAGAAGGCGCACGTGTGCGATGTATGTGAGAAGGCCTTCGCACGACGCGCTGAGCTCGTCGACCACGCCAGGATACATACCGGCGAGCGACCGTTTGAATGTGAGGTGTGCGGTGCGAAGTTCTCGCAGCGATCCAATCTGCACTCGCACAGGCGGGCGACGCATTTAGACGACAAGCGACACACTTGCCCCGACTGCCCGAAACGATTCAAACGGAGAAGACTACTACAGTACCACATAAAGGCAGCACACACCGgcgaaaggcctcttaaatgcGACGTTTGCTTTTCCACCTTCGTGTATCCAGagcattataaaaaacatatccGGATACACAACGGAGAGAGGCCTTATTACTGTGAGATCTGCGGTAAGGCGTTCAACTCTCGCGATAATCGAAACACGCATCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCCTCGCGTGCGGCGCCTCCTACATGCGCAAGCGCATGCTCGTCGCGCACATGAACGACAACTTATTTGCTGACCAACAATCAAAATCAGATATGCAATTGGTTGATGCTGACAAAAACGTGGAAGaTGAGCCAGTAACTTCAAATGCTGAAGCCGCTATCATCACTACTGTAAACTCTGAGACCTTGGACCCACAACAAATAACGGATGAAAATGGCAGTATATTCAGATTCATTCAAGTTCAGATGCCGGATGGAAAGGATGGCTGGGTCGCACTCAACGACTGA
- Protein Sequence
- MSQTCLVCNKQGPFGIHDIQNVFDENNTFPSERKLIGVLFEIIDNKLDEEKVSTKILCKECYKLCENYDHYKTNMAILKMKLSELYYTTQGKTSLTQMAVLEPIKIIPKKETKGMFVVPASKLQPLPAGFQLNLGKIAAMANPNVLPSKPVNLKMTIGNSVLTQSLTTSTVKLVKPSELSADANTIKIGQVGQWNVSSLPNEIFSNGHESDNNDANNHQMEIDEGSKPTPVTQSDSILIDASSIKTENTEGARYMNSENFELLLEGQDDEDEDDEQSHTIVVDGNNSILQMMSGQKLVYENGELSFVMRENDDDEDIDEQDSNDEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSKPSESVLPDTATQLVARDGDLYRCLVCDNLRGSVGVSYTGSARDTVQHMKRQHSAQVYICALCGIIMRSRADYTTHMAEHSRRLGAPKTRLYACTAPACNKSYNSRTLLHEHGNLHAGTRPYACHICDKTFASKYTRQAHLKTHQVRPRPYECQVCGKSFLSRQNLMQHEKTHLGIKSFICNICEKAFGTQHSLEVHGVVHSGQKAHVCDVCEKAFARRAELVDHARIHTGERPFECEVCGAKFSQRSNLHSHRRATHLDDKRHTCPDCPKRFKRRRLLQYHIKAAHTGERPLKCDVCFSTFVYPEHYKKHIRIHNGERPYYCEICGKAFNSRDNRNTHRFVHSDKKPYECLACGASYMRKRMLVAHMNDNLFADQQSKSDMQLVDADKNVEDEPVTSNAEAAIITTVNSETLDPQQITDENGSIFRFIQVQMPDGKDGWVALND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -