Cpec011236.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596361.1:5114614-5125855[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00051 0.029 15.2 0.2 2 23 146 167 145 167 0.93 2 11 0.00074 0.042 14.7 2.4 1 23 173 195 173 195 0.96 3 11 8.2e-05 0.0047 17.7 0.1 1 23 300 322 300 322 0.98 4 11 7 4e+02 2.2 0.2 3 23 330 351 329 351 0.91 5 11 0.00026 0.015 16.1 0.0 3 23 412 433 410 433 0.90 6 11 0.0055 0.31 12.0 0.7 1 23 450 472 450 473 0.93 7 11 3.2e-06 0.00018 22.1 0.2 1 23 500 522 500 522 0.98 8 11 0.00079 0.045 14.6 0.2 1 23 528 550 528 550 0.97 9 11 0.00045 0.026 15.4 0.3 1 23 556 578 556 579 0.95 10 11 0.038 2.2 9.3 0.5 1 23 594 616 594 616 0.97 11 11 0.0042 0.24 12.3 0.1 1 20 753 772 753 775 0.93
Sequence Information
- Coding Sequence
- ATGGATGGGGACAAAGAGTTTAACCTCCATTGGGGAGGAGGGGAAGTAGTGGTGAAGCATGATCCCGAAAATCAAACAATATGTAGCATTGAAAGTGTGCATAGTTCATACACAAACATGACTCCTGAAGAAATAATGGCTAACACAGACCAAATGGCAGCTGAGAACCTAATGTTCCTGGCCCAAGATGTAATAGGCTACACCGAGACTGCGGAACTGGCCGATGACCCCAGTGTGGAATGTGTTACTGAGGAAGTTGTCACAGATGATTGGGTTATAGATGGTGTTCAGGAGAGAATGGATGTGCCGATGGAGCATTTAGCAAATATTGGAGAAGTAAATGTGAAAGAAGAAAATGATGTTGATGTTCCATTACCAACAGATCTAGAAATCAATCTACACTCACAAGACgagtacacagcaatgcggccGTGGCCTTGCGACTTCTGCTCGCGTCGGTTCCGCAAGAAAGCAGCACTCATGAACCACATGGTCGCGCACCAGAACGATCGACCGCACGCGTGTAATCTGTGCGGGGTGCGATATGTGCGGAAGTGCGATCTTATGAACCATCTTAAAGTGCACGCTTATGTACCCGATAATGCAGACTCTGTGGATTTTGAAGAATTACTAGAAAACAACCAAATTGTCAAACCAAAGAAGAAACGAGGACGGCGGAAAAAGATACCTGAACCAGAAGAGGATGAGTGGGAGAACATGACGTCAGCTCGCACGCAGCAGTGGTCGCGGCGCGGGCGCTCCCCGGCGCGGCcgccgccgtcgccgccgccgccgccgccgccgccgatgTCGCCGCCGTCCCCGTCGCCGTCATCGCCGCCGCAGTCGCCGCCGTCACCGCCGTCACCGGTGCCGCCCGCTGATCCATCGCGCCCGTTCGTCTGCCAGACTTGTGGTATCGGATTTGCTAGAGAGAAGGCGCTTCAGTCTCATGCTAGGGTACACGGAGGCGACTCCCCCGTGGATTGCGGCGAATGCGGCGAGCTGTGCTGGTCGCGCGACGCGCTGGCCTCGCACGTGCAGCAGCGGCACCCGCACTTGCCGCCGCGCACACCACAGGACACCAACTACAATGAATCTGACTCGGGCGATGACATGGAGTTCCGCCTGTCGCCGGAGTCGGCAccgagcggcggcggcggcggcagcggcggcggcggcttgGTCGAGCGGGCCGCGTACGACACGATGCCTCGCGGGCCCGAACTCTTCTGTCCCGACTGCGGCGTGGCCTTCCAGCGCGCCGACCTGCTGAGGCGACATGTAGCCGCCGcgcatagCTACAAGAGGCGGTCGAGCACGGGCGGCGCCTTGGGCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGCGTGCAGCGACGCGCTGCAGCTGCTCGCGCACGCGGAGCTGCACCACGACCGCCCGCACACCAACAGgttaaaaaaatcGTCTAAAGGACGTAATAGCTCGTCGATATCCATGAGTTCACGGCAGTTCCCTTGTAAGGAATGtgGGAAAGTGTTCGGTTCGCGGAGCTCCCAGCAGATACACATCCGCATCCACACGGGCGAGCGGCCGTACGCGTGCCGCTTCTGTTGGAAGGCGTTCGCGGACGGCGGCACGCTGCGGAAGCACGAGAGGATACACACCGGTGAGAAGCCGTACGCGTGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTCGTGCTAAGGGAGCACGTGCGCTCGCACCACTCCGCGCCGGACCGCAGGCAGCAAGCTAACGGTGGCGCAGTGTATTCGTGCGTGGTTTGCTCGCGCTCGTTGCACACGAGCGTGGAGCTGGTGCAGCATCTCATCCAGCACTGCGACGCTAACACTGCTCTGAAGAGACAACCGCAGAACGGTCCCCGCAAATACAAGCGGCGACGGAAGATGAAGTCACCCGTGCGGCGAGAGTGGGCGACCCCCTCCCCCGTACCGCGGTCGCGCTctccctccccctccccctcgcCCTCGCCCCCGCGCTCGCCCCCGCCCTCGCCGCCACCGCGCCGGCGCACGCGTCGCGACCCGCCGCCGCGCCCCCGCATGATACACACCTCGGAGGAATCTAAGCCGAAGAAACAGGTTAAGACGCTGCGCCAACGCCGGCCGCCGCGCCACCCGGCCGACGACCTGCGCGCCATCGGAGCCCACTCGCCGTCGCCGAAGCGCGAGCCGTCTCCCTCGCACTCGCCACCGCCCGACTCAACCCCGGACGAAGGAGGTCCATACAAATGCGAAATGTGCTCGCTCATGTTCCCCCGGCGAGACGCGTTGCTACTACACGTGCCTGTGCATATATGA
- Protein Sequence
- MDGDKEFNLHWGGGEVVVKHDPENQTICSIESVHSSYTNMTPEEIMANTDQMAAENLMFLAQDVIGYTETAELADDPSVECVTEEVVTDDWVIDGVQERMDVPMEHLANIGEVNVKEENDVDVPLPTDLEINLHSQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAYVPDNADSVDFEELLENNQIVKPKKKRGRRKKIPEPEEDEWENMTSARTQQWSRRGRSPARPPPSPPPPPPPPMSPPSPSPSSPPQSPPSPPSPVPPADPSRPFVCQTCGIGFAREKALQSHARVHGGDSPVDCGECGELCWSRDALASHVQQRHPHLPPRTPQDTNYNESDSGDDMEFRLSPESAPSGGGGGSGGGGLVERAAYDTMPRGPELFCPDCGVAFQRADLLRRHVAAAHSYKRRSSTGGALGWAEHTCDVCGEACSDALQLLAHAELHHDRPHTNRLKKSSKGRNSSSISMSSRQFPCKECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRQQANGGAVYSCVVCSRSLHTSVELVQHLIQHCDANTALKRQPQNGPRKYKRRRKMKSPVRREWATPSPVPRSRSPSPSPSPSPPRSPPPSPPPRRRTRRDPPPRPRMIHTSEESKPKKQVKTLRQRRPPRHPADDLRAIGAHSPSPKREPSPSHSPPPDSTPDEGGPYKCEMCSLMFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377360;
- 90% Identity
- -
- 80% Identity
- -