Cpec020384.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596376.1:3900204-3906809[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4 81 4.4 0.4 3 23 2 23 1 23 0.90 2 17 0.0019 0.11 13.4 0.8 2 23 48 70 47 70 0.96 3 17 0.0011 0.064 14.1 0.6 1 23 92 114 92 114 0.98 4 17 0.00083 0.048 14.5 3.4 2 21 119 138 118 139 0.93 5 17 0.011 0.65 11.0 3.0 1 23 172 195 172 195 0.91 6 17 3.8e-06 0.00022 21.9 0.7 1 23 202 225 202 225 0.94 7 17 0.0022 0.13 13.2 1.3 2 23 231 252 230 252 0.94 8 17 2.9e-05 0.0017 19.1 1.0 1 20 258 277 258 280 0.93 9 17 0.026 1.5 9.8 0.1 2 23 368 389 367 389 0.96 10 17 0.11 6.2 7.9 0.1 3 23 418 438 416 438 0.96 11 17 0.0025 0.15 13.0 0.7 1 23 442 465 442 465 0.94 12 17 0.18 10 7.2 0.9 1 22 469 490 469 490 0.94 13 17 0.29 16 6.6 1.9 2 23 498 520 493 520 0.86 14 17 0.0028 0.16 12.9 0.7 1 23 527 550 527 550 0.97 15 17 0.00016 0.009 16.8 1.6 3 23 557 577 555 577 0.93 16 17 3.1e-05 0.0018 19.0 0.7 1 20 583 602 583 605 0.95 17 17 0.11 6.1 7.9 1.1 1 14 611 624 611 626 0.91
Sequence Information
- Coding Sequence
- ATGTGTGTGTTTTGCTGCGAGAGCTTTCCAGAAGCAGCATTGTTCAGGCGACACATGATCGATGAACATGAAAACTTCAAAATGCATCTTGCATTTGCGCATATTTCAGAAGGATACCTAAAAGTTGACATCACAGAATTACAATGTCGAATTTGCAATACACCTTTCCACAATCTCGATAAGCTAGCCATTCATTTGAAGAAAGCTCATTCCAAAATGATTTGTCTCGATAATGATTTGGGGTTACAGCCTTTTCGCTTGGAACACGATAAGTTCGTTTGCCCAATATGTGAGCAGAAATCCGCTAACCTTTGCGCTCTCAGCAGACACATTCAAAAACATTTCCAAAACTGCATCTGCGAGCATTGCGGTAAAGCTTATTCAACTCACACGTCTCTTGCCCATCATGTCAGGTACTCGTGTTTGAAGGATGGTCAGAGGCGATGCAGGAAATGCCAAGTGGTTGTCAGTTCAATCGTGGAGCATTTGAATTCTTCTGCGAAATGCAGACAGCATATTTGCCACATTTGCGGGGAGAGATTTGCAACATGgttcaaaaaacatttacacATGGAAGAAGTTCACTCTTTACCCAAAAAAACGTTTCCGTGTCCTGAATGTGGAAAAGTCTTCACTTCTAATAAAAGTCTGCACTCTCATTTCATTATTGACCATACAGACGATTTTCTCCAGTGCATACACTGTGGAGTAAAGTTTTCTTCAAAGTATAGATTAGATAGGCACATGATAGTGCATACTGGAGAGAAAGCGTTCGCATGCAAGGTGTGCTCTAAAAGCTTCAATAGACAGTCTACTTTGTATCAGCATATGTGGATTCACAGTGACATCAAGAAGCATGTCTACAACAAAGCACACACGAAACGGAACGCTGAGCTCGTGTTAAAGTACTCGACACTGTACCCATTCAGGTTACGAGGCAAAACCTTGATATGCGTTTACTGCTGCGACGAGTTCCAAGATCCAGACGTTTACAGATGCCATATGGATGAAAATCATGCGACGCCTAATTTGTACACAGCTTTCGCACACACCAGCAATTGTAGATCGAGAGAATATCTAAAAGTGGATTGTGTCAATCTGACATGCAAACTGTGTAAGGAGCCATTCAATTCAATCGCTGACGTAGCTCAACATCTGCTTAGCCATAAAAATGCCGAAATTGTAAATGATATGAATTTAGAATTCGAAATAGGACTGCATCCGTACCGATTGCTGAAAGACAAATGGGCCTGCATGGTGTGCAATATAAAATTGCCGACCATAACCAAACTCGCAAGGCACATGTCCTCTCACTACGCGGACTACTTTTGCGAGGTTTGCGGCAGAAGCTACTTGAACGCAGACAACTTGAAATATCATGTCAAGTTTAGCCACTCGGACAAACACATCTGTAGAAAGTGTATGAAGGAATTCCCTACGGCGGAGGAACGAAAGAGACACCTTAAAACATCGGTTAAGTGCAGACCGTTTGCTTGCATTAATTGCGGCGAAAGATTCCACTCTTGGGAACAGAAGCAGAAACACTTAGTTTCTGCACACGATGTCCAAGAAGCAACCTACCCTTGTCCGGACTGCGAGATCGTGTTTAATTCAAGGAAACGCTTCTACGATCATTATACCACATCGCATTCAGATCTGGCGATTATGTGCTCGTGCTGTGGAAAGAAGTTTAGAAATAAGGGTCTGCTAAATGAACATATGCTTATACATACAAGGGAAAAGCAGTACCAGTGCCCTAAATGTTTGAAAAAGTTTTCTAGAAACAGGGCCTTGCAACAACACATATGGATTCACAGTGAAATCAAAAGATTTTCTTGCGTAATTTGTAATAGGTCGTTCAACCAGAAGTATTCCACACTGTATCCATTCAGGTTGCGCGGTAACATGCTGATGTGCGTTTACTGCTGTGACGAAGTCGAAGACCCAGACGAGTACAGATGCCATATGGATAAAATGCACAAGAACGTTGATCTATACACAGCGTTCGCTCACGTTAAAAGTAGAAATAGaataggcgaaagagactatcTTAAAGTCGATTGTATTAACCTGAAATGCAGATTGTGTGAAGAACCTTGCGATACAGTCACTCTTGTAGCTCAGcatcttaagaggcctttccaagatttagcgatataa
- Protein Sequence
- MCVFCCESFPEAALFRRHMIDEHENFKMHLAFAHISEGYLKVDITELQCRICNTPFHNLDKLAIHLKKAHSKMICLDNDLGLQPFRLEHDKFVCPICEQKSANLCALSRHIQKHFQNCICEHCGKAYSTHTSLAHHVRYSCLKDGQRRCRKCQVVVSSIVEHLNSSAKCRQHICHICGERFATWFKKHLHMEEVHSLPKKTFPCPECGKVFTSNKSLHSHFIIDHTDDFLQCIHCGVKFSSKYRLDRHMIVHTGEKAFACKVCSKSFNRQSTLYQHMWIHSDIKKHVYNKAHTKRNAELVLKYSTLYPFRLRGKTLICVYCCDEFQDPDVYRCHMDENHATPNLYTAFAHTSNCRSREYLKVDCVNLTCKLCKEPFNSIADVAQHLLSHKNAEIVNDMNLEFEIGLHPYRLLKDKWACMVCNIKLPTITKLARHMSSHYADYFCEVCGRSYLNADNLKYHVKFSHSDKHICRKCMKEFPTAEERKRHLKTSVKCRPFACINCGERFHSWEQKQKHLVSAHDVQEATYPCPDCEIVFNSRKRFYDHYTTSHSDLAIMCSCCGKKFRNKGLLNEHMLIHTREKQYQCPKCLKKFSRNRALQQHIWIHSEIKRFSCVICNRSFNQKYSTLYPFRLRGNMLMCVYCCDEVEDPDEYRCHMDKMHKNVDLYTAFAHVKSRNRIGERDYLKVDCINLKCRLCEEPCDTVTLVAQHLKRPFQDLAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -