Cpec020432.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596376.1:4251937-4257531[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.4 23 6.1 0.5 2 23 88 110 87 110 0.95 2 24 1.9e-05 0.0011 19.7 0.5 1 23 115 138 115 138 0.96 3 24 1.7 98 4.1 6.1 1 23 141 164 141 164 0.94 4 24 0.0017 0.098 13.6 0.8 1 23 170 193 170 193 0.95 5 24 0.0017 0.095 13.6 1.8 2 23 201 223 200 223 0.96 6 24 0.15 8.3 7.5 0.6 1 23 228 250 228 250 0.98 7 24 1.4e-07 8e-06 26.4 0.6 1 23 256 278 256 278 0.98 8 24 0.042 2.4 9.2 0.5 1 23 366 388 366 388 0.98 9 24 1.1 64 4.7 0.1 2 22 414 434 413 436 0.89 10 24 0.41 23 6.1 0.1 3 23 460 481 458 481 0.93 11 24 0.0018 0.1 13.5 0.1 3 23 489 510 488 510 0.95 12 24 0.0016 0.092 13.6 0.6 3 23 517 538 516 538 0.95 13 24 0.011 0.64 11.0 2.3 1 23 544 567 544 567 0.98 14 24 0.0012 0.068 14.1 2.2 2 23 574 596 573 596 0.95 15 24 0.045 2.6 9.1 1.3 1 23 602 624 602 624 0.93 16 24 0.00092 0.053 14.4 0.7 1 23 630 653 630 653 0.94 17 24 0.11 6.5 7.8 3.8 1 23 750 772 750 772 0.98 18 24 0.072 4.2 8.4 0.0 2 23 797 819 796 819 0.95 19 24 0.033 1.9 9.5 0.1 2 23 840 861 839 861 0.96 20 24 0.084 4.8 8.2 0.6 3 20 869 885 867 887 0.83 21 24 0.45 26 5.9 0.4 2 23 895 916 894 916 0.93 22 24 0.43 24 6.0 0.2 1 23 920 943 920 943 0.89 23 24 0.3 17 6.5 1.9 2 23 950 972 950 972 0.95 24 24 0.00069 0.04 14.8 0.5 2 23 979 1000 978 1000 0.96
Sequence Information
- Coding Sequence
- ATGCGGGACTGCAACGTTTTACAAGAGCACACGCAGAAACACAACGCTGTAGATCTAGACAGCTTCTTAAAAAAGCACATTATAACCAAAGATGTGCCCGTCAAAATCGACGTCACACATATCGCTTGCAACTACTGCCCTGATGTTCAGATCAGCACTATGGACGAAATGGTATCACATGTGGTCAGCTACCACGGCGAAGAGTACGACACGACCGTGGAACTTTGCTTCTTCCCGTTCGTTCTGAGCAAAGATTTCATGCAGTGCGTCTTATGCGATTCAGACTACGACAACTTTACCTCGCTGATCACTCATATGTATAAGAAACATGTGACTCATACTTTCATGTGTCAGATTTGCGGTCTGAGCTTCAAGGACCAGGTTCGCCTTAAGCGTCATTTGAGCGTTAGCCACGTCGGCCACCGTTGCACGTTCTGCGATAAGATCTTCGATGCTTTCCACAAGTTGGATAAACATAAGGAGCGCTTTCACGGCCAAGTTAAGACCTATGAGTGCAATTTGTGCAGCGCCAAGTTTAAAAACAACTACAGGTTAAGAGTGCATTTGGGGAAAGAGCATAATGTGGAGAAGTACAGGATAAAATGCGAGCATTGCGAGAAGGTATGCACTACCAAAGGGGCTATGGTACTGCACATCCAAAGCATGCATTCAGAGTTCAAATACCAGTGTGACTTGTGCGATTACACCACGGGTATTAAATGGCTTGTGAAACTGCATAAGCGTAAGCATTTTGCTGTGAAGGATTACTCCTGCAGCATCTGTGAGAAGGCGTTTGGGAGGTCGAGTAATTTACGGACCCATATGAAGGTCCATGTTGGGGTGACGGGAGAACCTAGAGGTGGCCAGAAAGCGAAACTATTGATTAAAACCACACGATCGGCTCCGGTGTCGGCGCCGGCTCCCGTAGCCAGCATCCGGCGGGCGGCCAGAGATCTGGCTCCGTCAGCCAGCGTCCTCGCGGCCAAGCCCAGAGCCCAGCTATCCTCGAGAGATAAACGCAACATCATGATCAAAAACGTGGTAGAAGTCCTGCTTAAAACAACCGTAATGCCTTTCCGCTGGCTCAAAAGTTCATACCGCTGTTTCTACTGTTACGACATATTCCAGGAAGCGTCGGAATTAAAAGCGCATCAGACCGTGCATACCGATGATACCCTAAAAGAGAAAGCGATGATGAACTACTGGGAACCGGTCGTTTACGTCGACATTTCCAACTTAAAATGCAACCTCTGCTCCGAGGAACTAACAGACCTTTACGATATGATCGACCATCTTGTCGCGAAACACGgcgtggtgtacaataaagacgTAGGAATCTGCATGGCGGCGTTTAAGCTGAACAACTTTGACGTGAGCTGTCTCGCTTGCGGTGCCAGTTTTTACACCTTCGGACCTCTGTTAAACCATACCAACAAAGACCACAAGGGCACATCGGTGATCCTTTGCGAGATCTGCGGTCAGAACTATAAAGATCAGAACCTTTTGCGTCTCCACGTAAAGGCAGCACACGACAACAGCGGAATGCTGTGCCCCGAATGCGGTGACAAGTTCGAAACAAGATCCAAGCTGAAAACCCATCAGATAAACAACCACGGCTTGGAGAGGAAGTTCAAATGCCTCGTTTGCGATCTCACATTCGGCAGTCACTACAAAAGATCGCGCCACATGGCGACAGACCACAAAAACAGGCAGGAGATCAAATGCCTGCACTGCCCCAAGACTTTTGTGTTTCGGAGTATGATGATGACTCATTTGCGCGATACTCATCTGAAAGTTCGAAATCATATCTGCGGTGTATGTGGATGGAAAGCGTTTAATAGTAACCGATTGAAGAATCATATGTATAAACATAGTGGGGAGAAGAATTTCAAGTGTGATGGGTGTGATAAAGCGTTTACTACGAGGAAGATAATGAAGGCTCATTACGCGAGGATGCATAAGGCGCCGACAGCTGTGCCTACAGCTATGCACTATAATGCTTACGAACTGCAATACCCCGAAACTTCAGAATCAACTGATTACAACCAAGAAACAATCACAGAATCAACCAAATACACGAATGAAACACTCACTCTTTCGACAGAGTCTGAAGAAAATATATCAGGCTCAGATTCTCGGAGTGACGCAAAGAAAGCTCCATCTGAGAATCTGGTTAAACTAAGAACTAACGTCAATAACGTAGTGCAAGCTACATCTGTTATGCCATTTCGATGGCTTGTCTCGGCCTATAGATGCTTTTACTGCTACGATGTCTTTCACCGTCTGAACGAACTCAAATCTCATCAAATGCTTCATGATAATACTGAAATCGTAGACGTTATGAACAAGTTTTGGGATTCAGCTGTTTATATCGATGTCTCTGTTTTGAATTGCAATCTTTGTGCTGCGACTTTGAACTCCCTAAGTAATTTGATTGATCATTTGATCACAGTGCACAAATTAACTTACAACAAAGACGTTGTCACCTTCCAGTCATTTAAATTGGGCGAAAAACTATCGTGCTCGGTATGCGATTTGGAGTTTGCGAACTTTCCGTTGCTTCTCGTTCACACTTCGAAGCATCAGCAAACCGAGGACCACCTTTGCAACATCTGTGGCAGAACTTTTAAGCCGCATCAGATTAAAATGCATTTAGCGAACGAGCGTAGGCGCAAGACCGTGAAATGCACGTATTGCAAAGTGGAATTTAGCCTGAACACAATAAGGACGCATATGGCTCGCGTGCACAAGAAGCTGTTCAAATGCCAGATGTGTGCAGAGACTTTTGAGACTGTTTACAAGCGCGCGGCTCATCTGACTGCCGTTCACAGAGGGAGGGAGCTAGCGCAGTGTCCACATTGTCCGAACACCTATTTATTTCAGAGCACCATGAGAAGGCACGTGAAACAGGTTCATGTTAAGGAAAAGAATGTTGAGTGCAGTTTGTGCGATTGGAAAGGGTTCAAGGCCTATAATTTGAATCGGCATATGAAAAAGCACTCTTGA
- Protein Sequence
- MRDCNVLQEHTQKHNAVDLDSFLKKHIITKDVPVKIDVTHIACNYCPDVQISTMDEMVSHVVSYHGEEYDTTVELCFFPFVLSKDFMQCVLCDSDYDNFTSLITHMYKKHVTHTFMCQICGLSFKDQVRLKRHLSVSHVGHRCTFCDKIFDAFHKLDKHKERFHGQVKTYECNLCSAKFKNNYRLRVHLGKEHNVEKYRIKCEHCEKVCTTKGAMVLHIQSMHSEFKYQCDLCDYTTGIKWLVKLHKRKHFAVKDYSCSICEKAFGRSSNLRTHMKVHVGVTGEPRGGQKAKLLIKTTRSAPVSAPAPVASIRRAARDLAPSASVLAAKPRAQLSSRDKRNIMIKNVVEVLLKTTVMPFRWLKSSYRCFYCYDIFQEASELKAHQTVHTDDTLKEKAMMNYWEPVVYVDISNLKCNLCSEELTDLYDMIDHLVAKHGVVYNKDVGICMAAFKLNNFDVSCLACGASFYTFGPLLNHTNKDHKGTSVILCEICGQNYKDQNLLRLHVKAAHDNSGMLCPECGDKFETRSKLKTHQINNHGLERKFKCLVCDLTFGSHYKRSRHMATDHKNRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGVCGWKAFNSNRLKNHMYKHSGEKNFKCDGCDKAFTTRKIMKAHYARMHKAPTAVPTAMHYNAYELQYPETSESTDYNQETITESTKYTNETLTLSTESEENISGSDSRSDAKKAPSENLVKLRTNVNNVVQATSVMPFRWLVSAYRCFYCYDVFHRLNELKSHQMLHDNTEIVDVMNKFWDSAVYIDVSVLNCNLCAATLNSLSNLIDHLITVHKLTYNKDVVTFQSFKLGEKLSCSVCDLEFANFPLLLVHTSKHQQTEDHLCNICGRTFKPHQIKMHLANERRRKTVKCTYCKVEFSLNTIRTHMARVHKKLFKCQMCAETFETVYKRAAHLTAVHRGRELAQCPHCPNTYLFQSTMRRHVKQVHVKEKNVECSLCDWKGFKAYNLNRHMKKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -