Basic Information

Insect: Colostygia pectinataria
Gene Symbol: -
Assembly: GCA_951394395.1
Location: OX596377.1:5663099-5664799[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.8e-06 0.0001 22.9 1.5 2 23 98 120 97 120 0.93

2 14 0.0012 0.069 14.0 2.7 2 23 127 149 126 149 0.94

3 14 0.0041 0.23 12.4 2.5 2 23 156 178 155 178 0.93

4 14 6.4e-06 0.00037 21.2 0.7 2 23 186 208 185 208 0.96

5 14 2.2e-05 0.0012 19.5 0.1 2 23 215 237 214 237 0.95

6 14 0.077 4.4 8.4 2.3 1 23 244 267 244 267 0.95

7 14 0.00023 0.013 16.3 1.7 2 23 274 296 274 296 0.96

8 14 0.00021 0.012 16.4 1.4 1 23 309 332 309 332 0.96

9 14 1e-05 0.0006 20.5 0.2 2 23 346 368 345 368 0.94

10 14 9.2e-06 0.00053 20.7 0.6 2 23 374 396 374 396 0.97

11 14 0.12 7.1 7.7 3.0 2 23 404 426 403 426 0.88

12 14 0.00049 0.028 15.3 10.2 1 23 431 453 431 453 0.98

13 14 0.00013 0.0073 17.1 1.1 1 23 459 482 459 482 0.96

14 14 0.12 6.6 7.8 4.4 3 21 533 551 531 552 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.8e-06	0.0001	22.9	1.5	2	23	98	120	97	120	0.93
2	14	0.0012	0.069	14.0	2.7	2	23	127	149	126	149	0.94
3	14	0.0041	0.23	12.4	2.5	2	23	156	178	155	178	0.93
4	14	6.4e-06	0.00037	21.2	0.7	2	23	186	208	185	208	0.96
5	14	2.2e-05	0.0012	19.5	0.1	2	23	215	237	214	237	0.95
6	14	0.077	4.4	8.4	2.3	1	23	244	267	244	267	0.95
7	14	0.00023	0.013	16.3	1.7	2	23	274	296	274	296	0.96
8	14	0.00021	0.012	16.4	1.4	1	23	309	332	309	332	0.96
9	14	1e-05	0.0006	20.5	0.2	2	23	346	368	345	368	0.94
10	14	9.2e-06	0.00053	20.7	0.6	2	23	374	396	374	396	0.97
11	14	0.12	7.1	7.7	3.0	2	23	404	426	403	426	0.88
12	14	0.00049	0.028	15.3	10.2	1	23	431	453	431	453	0.98
13	14	0.00013	0.0073	17.1	1.1	1	23	459	482	459	482	0.96
14	14	0.12	6.6	7.8	4.4	3	21	533	551	531	552	0.90

Sequence Information

Coding Sequence: ATGGAGGAAGTTTACATAAAAAGTGAACAAGTTGAAATAGAAATCAAATGTGAGGAAGTTTCAGAAAATGGTGAAACCAGCtatcaaaaacaatttaaaccaGAAACAACTCACCATGACTGTCTGTCACTTGCAAATGATAATAATGGCTCAGTTATTAATACCAAAGTAGACAGTTTACTCAAAGAAACAATTTTCTATAATGAATTTCCAATATCCTATCCCGAGGAAATACACAAAGAAACTGCAATCTACGGAAAGGTGTACGAAAATGGTAAAGTAAACAGACTGTCATGCGATCAATGCGACAAAACATTTAAGAACCGAGCCAATCTCAAAAACCACTTAAAGTTTGTTCACTCGGGTAATCACAGCGTTGAATGCTCCCAATGTTTCCGTGCCTTCAAATCTCATGGGCATCTCCGCTCACATTTAGACTCTGTGCATGCTGTGACAGAAGAAGTCAGCTGTCATATATGCAACAAAATATTCCTGAACCAGAAGAAACTGAAGAACCATATTTATTACACTCATCCTGAGCCCGGCGAGCAAGTAACATGTACAGTATGCTCCAAAATATACAAATCCCAGTACAACCTCAAAATCCATATGAAGCAAGTACACCCGGAGGGTCAATCCGTGCCCTGTCCGTACTGTGACAAGACATTTAAAGTAGATATGCTACTGCAAAGGCATATAAAGTGGAGTCACCCTGATGACGGAATGATTTACAAATGCCAGCAGTGCTTCAAAGTGCTGCCTTCTATCGCATGCTACAAGAAACATATCGAGAACACACATGATACTGCGTCAAGAGCCACATGTGAACTGTGCCAGCGAATCTTCAAGACCAAGAAGTCCCTAGACCGACATCTCAAAAACGTACACAACGGTAAGGATGTTAAAGCTTACGTCCCGAGTAAGTTTATATGTACGTACTGCGAACGAGGCTTTGAAAACAACACATCTCTTTTCTGGCACACACAGAAATACCATCTCGAAGGGGTATCAATGTGCGAGACAGATACCAACATCCATTGTGAGGTATGCGACAAGTCTTACTCAGACAATGCAGCATTACAAAGACACTTAGCATCCGTACATTCTCTAGAACCGGCCACTTGCAGCATATGCAGAAAGGAGTTCAAGTCTGCGATCAACCTCCAAAGCCACATAAGGATCACACATGCACCACCGGAAGCCACTCAGACCTGCGAGATCTGCAAAAAGACCTTCAAATGCGCTTTACACCTACGAATGCACGTAACCGCTGTACACACCTCTGGGGAATTTCACTGTGATATCTGCGACAAACACTTCACATCACATAAATACCTGAACAAACACAAGAAAACACATTTAGAGACGAGAGAACATCCTTGCGATTTATGCggtaaaatgtttaaaagtttattcGCAGCCAACAAGCATCAAAGGAACGTCCACAACGGAGTTAAATGCAGTTTCTGTCATATCAAGCAAGCTAAACTTAACGAGCATCTACTAAAGTGTCCTAAAAGAGAGTCTAGTGAGAGAGAGTCTCGTGATAGAGAGTCTGGTGAAAGGGAGAGAGTCCGAGAGAGTTTCAGTGATTGCTGTGTGAAGTGTGGGTGTCGGTTTAAGAGTAACTTGGAACTGCATCAGCATATCTTGAGGTGTGGGTATGAAGCAGATACCGTTGTTAAGATTGAGGAGGTTTGA
Protein Sequence: MEEVYIKSEQVEIEIKCEEVSENGETSYQKQFKPETTHHDCLSLANDNNGSVINTKVDSLLKETIFYNEFPISYPEEIHKETAIYGKVYENGKVNRLSCDQCDKTFKNRANLKNHLKFVHSGNHSVECSQCFRAFKSHGHLRSHLDSVHAVTEEVSCHICNKIFLNQKKLKNHIYYTHPEPGEQVTCTVCSKIYKSQYNLKIHMKQVHPEGQSVPCPYCDKTFKVDMLLQRHIKWSHPDDGMIYKCQQCFKVLPSIACYKKHIENTHDTASRATCELCQRIFKTKKSLDRHLKNVHNGKDVKAYVPSKFICTYCERGFENNTSLFWHTQKYHLEGVSMCETDTNIHCEVCDKSYSDNAALQRHLASVHSLEPATCSICRKEFKSAINLQSHIRITHAPPEATQTCEICKKTFKCALHLRMHVTAVHTSGEFHCDICDKHFTSHKYLNKHKKTHLETREHPCDLCGKMFKSLFAANKHQRNVHNGVKCSFCHIKQAKLNEHLLKCPKRESSERESRDRESGERERVRESFSDCCVKCGCRFKSNLELHQHILRCGYEADTVVKIEEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -