Basic Information

Insect: Colostygia pectinataria
Gene Symbol: ham
Assembly: GCA_951394395.1
Location: OX596363.1:4749154-4784618[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.053 3 8.9 0.2 2 23 238 260 238 260 0.93

2 9 0.00048 0.028 15.3 1.0 1 23 267 290 267 290 0.93

3 9 2.4e-08 1.4e-06 28.8 0.1 1 23 296 319 296 319 0.96

4 9 7.1e-06 0.00041 21.0 1.1 1 23 325 347 325 347 0.95

5 9 7.2e-05 0.0041 17.9 6.1 1 23 353 375 353 375 0.99

6 9 0.00015 0.0084 16.9 0.4 2 21 383 402 382 403 0.94

7 9 1.7e-08 9.9e-07 29.3 0.7 1 23 796 818 796 818 0.98

8 9 6.2e-07 3.6e-05 24.4 1.7 1 23 824 847 824 847 0.97

9 9 6.8e-06 0.00039 21.1 3.3 1 23 853 875 853 875 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.053	3	8.9	0.2	2	23	238	260	238	260	0.93
2	9	0.00048	0.028	15.3	1.0	1	23	267	290	267	290	0.93
3	9	2.4e-08	1.4e-06	28.8	0.1	1	23	296	319	296	319	0.96
4	9	7.1e-06	0.00041	21.0	1.1	1	23	325	347	325	347	0.95
5	9	7.2e-05	0.0041	17.9	6.1	1	23	353	375	353	375	0.99
6	9	0.00015	0.0084	16.9	0.4	2	21	383	402	382	403	0.94
7	9	1.7e-08	9.9e-07	29.3	0.7	1	23	796	818	796	818	0.98
8	9	6.2e-07	3.6e-05	24.4	1.7	1	23	824	847	824	847	0.97
9	9	6.8e-06	0.00039	21.1	3.3	1	23	853	875	853	875	0.98

Sequence Information

Coding Sequence: ATGCCACCCGGGACTGACGTCAAAGAATACTACGGTGCGATAGACTTCAACCTATCAGACACATACCTATCATCCAGTTTCCCGGACTACAGACACCTGCCTAGACCACTCGACTGGCCAACCCAAGGGTTTGACTTAAAAAGTCCAAAGGAAAAGGATGAGATAAAAGATGACGACACAGGTGAACTAGAGTTGAACTTGCCGATTGAATTGATTTACAAAAATAGTGGGATATTCGCGAGGGTGACCATAGCTAATGGTACAAAGTACGGACCTTTTACTGGCAAATGGGAAACGCAGCCGCTGGATAGAAGATACTCCTGGGAGCTGCTAGGAAAGAACGGCGTCCGCGGCTGGCTCGACGGCACCAACGAGAAGAGCAACTGGTTGAAACTGGTGCGCTCTACCAATTACCCCCACGATGTCAACGTGCAGCATTTGCTACTGGCTGGTCAAGTGTGGTACAAGGTGATCCGCGAGATCCCTTCCGGCCAAGAACTGCTGTTGGGACCTAGAACTCCTCTGCCTCTTCAAGATGTCATGCCCATGCCAACCCTAAACAaccatCTGCTACAAACCGAAAAATTCAGTAGTCAAACGTTGGAGAAGTTTAGCAGCCAGTCTTGTGAAAAGTTCAACGTCCAATCTATTGAGAAGTACGCACTGTCTGAAGAGAGGAACGAAGACGAAGACCGCGAGGATACAGAGCCTAGGTGTTCGTTCTGCGACGAACCGTTCCCTAATATCGAAGCTCTTGACCACCACCTGATCCAGTCCCACGCGCAGCCAGCTTCAGCCTTCCACTGCGAGCTGTGCAACCGCTCCTACAGCTCCCGGGCGCTGCTGCTGCGCCACCGAGCCCTCGCTCACAGCAACATCAGGAAATACCCTTGCGAAAACTGCCCTAAGGTATTTACCGATCCTTCCAACCTGCAGCGCCACATCCGCGCGCAGCACAAAGGCGCCCGCAGCCACGCCTGCCCCGAGTGTGGCAAGACCTTCGGGACAGCCTCCGGCCTGAAACAGCACACCCATATCCACTCCAGTATCAAGCCGTTCCAGTGCAAAGTCTGCTTTAAGgctTACACGCAGTTCTCCAATTTGTGCCGGCACAAACGCATGCACGTTGCCTGCCGAGCCCTTGTTGAGTGTGGCAAATGCGGTCAATCCTTCACCTCATACGCATCTCTCACTAAACACAAGAGGTTTTGCGACACGGCTACTGCTAGCTCTATTGGCCATCGAGGACAGATGCCTCAAGGACTTCCACAAATTCCGTCTTTATCAAACGTCGGGATGACTAACCCTAATAGTCCTAACCCCTTTCCAATGTATCGTCCAAATTTATCACTGTCATACAATACCTTTGCTCATTACCCTGCTTTGTTTTCCGCTGCGGCTGCGGCTTGCCCGCCAGAGTTCCTAAATCCACTAATTTTCAACGTTCAGGGAGCAAGGCTTGCTATGGAACACGACTTTGCAATGTCCAACGCCAACCTCGCTAAGCAACAAGAAGGACGTATGTCAGTTAAAAGTATTGACAGCTCAACTTCTCTGGAAGAAATCAGGAAGTCCAAAGATTTGGAATTTGAGTCCAATAGGAGCGATAATACAGACAAGGTTACACCAAACAAGTCCCTGAGTCTGTATCCTAAACATTCGCCTTTATCTACTGTGGACAACTCATCCCAACATCGACCATCACCAATTATGCCGATGCACACACCGATGGTACCACTAAACTTTACTCGAGAGGACCATAAAAGGAAGTCACCATTCAGCTTTTTTCTTAAACATAACAACAATGACCTTCAAGAAAGAAAATCGGTATCCCCAACGCTTCCAAAAGATTTGTCCAAAAACGTCGTTGAAGATGACAAAACTTCAGAATACTCAGATGTAGAGGATTCTAGTAAGAAAGACCAAAGCGACCAGCCTCTGGATTTGTCGGTTTCTAGAAAGCAAATTGACAAAGACTCCGAAGCTGATGTCGATGATCGTTCCTTTCGTCACTCTGTAAAGTCATATTCTCCACCAGAAAGCCCTGTTGAGAGAAATAAGACTCCCGAAAATGATACTACAGATGTAGATGTGGAGGGCGTAGAACCAAAACGCGAGGATTCTCCACCGCAAATAGTGACGTCACCACTTGCATTCCCGATGCCCGTTCACCCACAACACAACCTCATCGATGCAATGTACCGTCCGAGATTTCCGTCATTCCACTCTGCAGAATCAATCCTCAATTCATCGCACTCGCCCTATGTTCCAAGCCCTTTCAATTTTTTATCCCCACTTCTCAGCACTGATGGCCCAGACAGGCAACCGAGCGCGTATGCTAAGTTTCGTGAACTCAGCACTGGCGCTGGTAAAGTGCGCGATCGCTACGCGTGCAAATTTTGCGGGAAGGTGTTCCCTCGTAGCGCAAACCTCACACGGCATCTCCGCACTCACACCGGTGAGCAACCGTACAAATGCAAGTACTGCGAGCGTTCGTTTTCCATCTCATCGAACTTGCAACGGCATGTAAGGAATATTCACAACAAAGAAAGACCATTCAGGTGCCCGTTGTGCGATAGATGCTTCGGACAGCAGACGAACCTTGATCGCCATCTAAAGAAACATGAGGCGGAGGGTGGGGATTCACCTAGTTCTGCGGATACGGAGCGTGAAGATGCGTATTTTGATGATATCAGATCTTTCATGGGGAAAGTGACGTGTTCTCCTCCGGCGTCGTCGCCTCACGCACCCTCGCCGCACCCATCGCACCCCGCGCACCGCCCGTCACTCGCCATCTCCACATAG
Protein Sequence: MPPGTDVKEYYGAIDFNLSDTYLSSSFPDYRHLPRPLDWPTQGFDLKSPKEKDEIKDDDTGELELNLPIELIYKNSGIFARVTIANGTKYGPFTGKWETQPLDRRYSWELLGKNGVRGWLDGTNEKSNWLKLVRSTNYPHDVNVQHLLLAGQVWYKVIREIPSGQELLLGPRTPLPLQDVMPMPTLNNHLLQTEKFSSQTLEKFSSQSCEKFNVQSIEKYALSEERNEDEDREDTEPRCSFCDEPFPNIEALDHHLIQSHAQPASAFHCELCNRSYSSRALLLRHRALAHSNIRKYPCENCPKVFTDPSNLQRHIRAQHKGARSHACPECGKTFGTASGLKQHTHIHSSIKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTATASSIGHRGQMPQGLPQIPSLSNVGMTNPNSPNPFPMYRPNLSLSYNTFAHYPALFSAAAAACPPEFLNPLIFNVQGARLAMEHDFAMSNANLAKQQEGRMSVKSIDSSTSLEEIRKSKDLEFESNRSDNTDKVTPNKSLSLYPKHSPLSTVDNSSQHRPSPIMPMHTPMVPLNFTREDHKRKSPFSFFLKHNNNDLQERKSVSPTLPKDLSKNVVEDDKTSEYSDVEDSSKKDQSDQPLDLSVSRKQIDKDSEADVDDRSFRHSVKSYSPPESPVERNKTPENDTTDVDVEGVEPKREDSPPQIVTSPLAFPMPVHPQHNLIDAMYRPRFPSFHSAESILNSSHSPYVPSPFNFLSPLLSTDGPDRQPSAYAKFRELSTGAGKVRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPPASSPHAPSPHPSHPAHRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00377331;
90% Identity: iTF_01336140;
80% Identity: -