Cpec006789.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596355.1:5416891-5426163[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.5e-05 0.0026 18.5 1.9 1 23 162 185 162 185 0.98 2 12 0.0011 0.06 14.2 0.6 1 22 192 213 192 214 0.90 3 12 6.9e-06 0.0004 21.1 0.6 2 23 220 241 219 241 0.97 4 12 1e-05 0.00059 20.5 0.5 1 23 247 269 247 269 0.98 5 12 2.4e-06 0.00014 22.5 3.5 1 23 278 300 278 300 0.96 6 12 1.8e-05 0.001 19.8 0.0 1 23 306 328 306 328 0.98 7 12 0.0027 0.16 12.9 6.8 1 23 334 356 334 356 0.98 8 12 7.2e-09 4.1e-07 30.5 0.8 1 23 362 384 362 384 0.99 9 12 0.00033 0.019 15.8 1.1 1 23 390 412 390 412 0.98 10 12 0.00012 0.0066 17.2 1.0 1 23 418 439 418 439 0.96 11 12 0.017 0.95 10.4 0.8 1 23 445 467 445 467 0.92 12 12 0.0013 0.074 13.9 0.3 1 21 473 493 473 494 0.95
Sequence Information
- Coding Sequence
- ATGGAATCCAATGAACATACAAATCTTGACAATGATAACTTAGAATTTGAGATTCCTTTATTGCTGCTCCAATATTTAGGCTCAGAAGAATGTAATTTACAAAACATTTGTCGAATATGCCTTTCAACCAGCAATGAAGTACTGTACCCACTTTCTTTCAACAAAGAGTACAGTCTTTTAACTGAGATGTTTCAAACTATAACATCTATTCATgtAAATTCTGAAGATGATTTCCCAAGTAGGATATGTTCAAATTGCCAAACAGAAGTGGTACACTACTTTAAGTTTAGAAGGAAATGTGAAAAATCTGAATACATGCTGCAGTCCATCTTGAAAGCTGAATTCCATATTAAAGAAGAGCTAAAATCTGATTGTGTTGAAGATCAAGATCTTAAAAATGATGAAAATAAACACTATTCAGATCCAGGCTCTATAGTAACAGAAATGATtgtttcaagaactaaaaagaaaaaaaaagcagaATATGTATGTTCTTTTTGTTCCAAGGTGTTTTATCAATTAAAACTGCTAAGAGCACATCAAAACAAATATCATGAAACTAGAGACAATCCATATCCATGTGAAGAATGCAATGAAACATTTATCTCCGAAAATGACCTGAAAGTGCACTGCATTTCACACAAGAATGGACCATGGAAATGCACTATTTGTGATAAAGATTTTAATGgAAGAACAGCGCTTCGCCGCCATATCCAACGTCACATGGACGCGAAACGGTTTTCATGTGACGCTTGCGGGAAGACATTTGTTGAAAAGTACGCGTTGAAACGACATTCCCGCGTGCACACCGGGGAACAGGCGGAGAAGAAGCACGTTTGTACTGATTGCGGCAAGAAATTCATCGATAACAGTCAGCTCATGACGCATATGACGCATCACAGCGGCGACAAGCCGTTTCAATGCGTGGTCTGCGGCAAAGCTTTCCCTTCGCCGCGACTTCTAGCATCACATCGCCTTGTGCACTCGGATATCAAGCCCTATGCGTGCGACTATTGTGAAAAACGTTTTCGTCACGAGTCGACGCGCAGCACGCACCACCGCACGCACACGGGAGAGAAGCCCTACGTCTGCTCCATCTGCGGCAAGACCTTCATACAGAGCTCCAACATGAGGCTTCATATGCGGACGCACACGGGTGAGAAACCGTACGCTTGTTCGCGCTGCGACAGTCGGTTCTCGTCGGGCTCCTCGCTGAAGAGCCACGAGCGCACGCACACCGGGGAACGCCCTTACAACTGCAAAGTTTGTGGAAAAAGTTTTGCCCGTCTTAATCTAAAGCTACACATGCGTCTGCATTCTGGCGAGAAGCCGTTCGCTTGCAGCGCCTGCCCCAAGAAGTACGTGAGCGCGTCCCTACTGCGCGACCACTGCCGCGCACACACTGGTGAAAAACCGTTCGAATGCGCCAAGTGTGAGTCGAAGTTTGCTTCAAAATCTCTCCTCATAAAGCATTTGAAAAACTATGAAAACAATAAATCAAAGGGAAGACACTCCAAAGACAATATAACCACTTTACGCCCGCCTTCTCCAATAATCAATCCAGCTGAAGACATGCAAAGGGAAGTTAAAACACACAAGAATGCGATCGTAGAACTAACGCTTGGCGCGCACGAGGCCTTCAATGTCAGTCAAGAATTAGTGTTTCATGACAATAACGTCAAAACCCACGTGATTGTACTTGGAAGCAGCAATACAGTCAGTTTTATAAGCAACGAAAATGGAAGCGCCTGCGCTAGCGGTCTAAATATAGTCACAGTAAATGAGATCGGAGTTAGTATGTCTGcaacaaatattagtagttaA
- Protein Sequence
- MESNEHTNLDNDNLEFEIPLLLLQYLGSEECNLQNICRICLSTSNEVLYPLSFNKEYSLLTEMFQTITSIHVNSEDDFPSRICSNCQTEVVHYFKFRRKCEKSEYMLQSILKAEFHIKEELKSDCVEDQDLKNDENKHYSDPGSIVTEMIVSRTKKKKKAEYVCSFCSKVFYQLKLLRAHQNKYHETRDNPYPCEECNETFISENDLKVHCISHKNGPWKCTICDKDFNGRTALRRHIQRHMDAKRFSCDACGKTFVEKYALKRHSRVHTGEQAEKKHVCTDCGKKFIDNSQLMTHMTHHSGDKPFQCVVCGKAFPSPRLLASHRLVHSDIKPYACDYCEKRFRHESTRSTHHRTHTGEKPYVCSICGKTFIQSSNMRLHMRTHTGEKPYACSRCDSRFSSGSSLKSHERTHTGERPYNCKVCGKSFARLNLKLHMRLHSGEKPFACSACPKKYVSASLLRDHCRAHTGEKPFECAKCESKFASKSLLIKHLKNYENNKSKGRHSKDNITTLRPPSPIINPAEDMQREVKTHKNAIVELTLGAHEAFNVSQELVFHDNNVKTHVIVLGSSNTVSFISNENGSACASGLNIVTVNEIGVSMSATNISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -