Cpec020416.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596376.1:4151227-4163688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 1.9 1.1e+02 4.0 0.3 2 23 395 417 394 417 0.95 2 31 0.00023 0.013 16.3 1.3 1 23 439 461 439 461 0.98 3 31 0.0015 0.086 13.7 0.4 1 23 465 487 465 487 0.97 4 31 0.13 7.6 7.6 1.4 2 22 523 543 522 545 0.89 5 31 0.0023 0.13 13.1 2.4 2 23 553 575 552 575 0.96 6 31 4.1e-05 0.0024 18.7 5.8 1 23 581 603 581 603 0.99 7 31 0.001 0.059 14.2 1.5 1 21 609 629 609 630 0.94 8 31 0.022 1.3 10.1 0.8 3 23 677 698 675 698 0.91 9 31 0.046 2.7 9.0 2.2 1 23 851 874 851 874 0.95 10 31 0.00076 0.044 14.7 0.7 1 23 881 904 881 904 0.96 11 31 0.027 1.5 9.8 2.5 1 23 910 932 910 932 0.97 12 31 7.4e-05 0.0042 17.8 1.1 1 23 938 960 938 960 0.98 13 31 2.9 1.7e+02 3.4 6.2 1 23 1075 1098 1075 1098 0.94 14 31 5.9 3.4e+02 2.4 4.2 1 23 1169 1191 1169 1191 0.98 15 31 0.84 48 5.1 0.2 1 23 1195 1218 1195 1218 0.88 16 31 8.9e-05 0.0051 17.6 1.2 1 23 1224 1246 1224 1246 0.98 17 31 0.0022 0.12 13.2 1.6 1 23 1252 1275 1252 1275 0.96 18 31 0.003 0.17 12.8 0.2 2 23 1283 1305 1282 1305 0.96 19 31 9.9e-05 0.0057 17.4 2.9 1 23 1311 1333 1311 1333 0.97 20 31 1.1e-06 6.6e-05 23.5 0.5 2 23 1340 1361 1339 1361 0.97 21 31 0.039 2.3 9.3 1.7 1 21 1367 1387 1367 1388 0.96 22 31 0.05 2.8 9.0 1.6 1 23 1601 1624 1601 1624 0.94 23 31 0.18 10 7.2 0.3 2 23 1653 1675 1652 1675 0.95 24 31 0.24 14 6.8 0.6 2 23 1698 1719 1697 1719 0.96 25 31 0.005 0.29 12.1 0.1 1 23 1723 1745 1723 1745 0.95 26 31 0.092 5.3 8.1 2.6 1 23 1750 1773 1750 1773 0.96 27 31 0.34 19 6.3 3.2 1 23 1882 1905 1882 1905 0.94 28 31 0.036 2.1 9.4 0.2 2 23 1932 1954 1931 1955 0.95 29 31 0.29 17 6.5 2.4 2 23 1977 1998 1976 1998 0.98 30 31 0.0036 0.2 12.6 0.1 1 23 2002 2025 2002 2025 0.93 31 31 0.68 39 5.4 1.5 1 14 2030 2043 2030 2053 0.88
Sequence Information
- Coding Sequence
- ATGGGTCTTTCCACCAAAACTAGTGGAGCGAAAACAACAGCAAGTactagaactaaaaaaaaacaagataagaATGCAGAAACAAAGAAAGCTGATGATGCTAAAATAGTTGAAGAAATCAAGAGTAATGAAGGTCTTGCCACCAAAAGTAATGCAGCGAAAACAACAAGGACTAAAACTAGAAAAACACAAGAtaaaaatgtagataaaaaGAAGGCTGAGGATGCTAAAATTGATAAAGATATCAAAGAAAAAAAGAGAAATGATGCTAAAAAAGTTAAATCGAGTGATTCTATAAAAACCAAAGACACAGAAAAAGTTAAATCTTTAACTGTATCTGctgaaaaaaagaaagatacaAAGAATGTTGACGAttctaaaaagaaagaaaaaagtaaaattgttaGAGAAAAGAATAAGAGCAGAAAAAAATTAAGGAAAGACGATGATGTGATTGAAATACACGATGATGATACCAGAcaagataaaaagaaaaaatctaagGACAAGAAAAGATCTAAAACAGACGACGATGTTATTGAAATCCACGATGATAATTCGAAAAGtgcaaaaaagaaaaagtcCAAAAGCAAGAAAAGATCTAGAAAAGATAGCGATGTGATTGAAATTATTGATGCTACCAATagtctcaaaagaaaaaaaacaaaaagcaaaACAATGCCGAGAAAAGATGGCGATGTGATCGTTATTCCTGAATCTATTGCAAGAAATAGCAAAAACCGAAAGACTGATgacaaaaacaatgaaaaaagcAATGATGAAAGCAAAACAATGCCCAGAAAAGATGGCGATGTGATTGTTATTCCTGAATCTATTGCAAGAAATAGCAAAAAGCAAAATACTGatgacaaaaacaataaaaaagacaatgattttgaaatttgtacgagaactaaaaaaaatgatgcGTTCTTTGCCATAGAGCTTACAGAGATTCAGAAACATTTGCACAATATACGTACAATCCTAATGCATTCTAATGCAACTCCGATACAAAGCCACAATGAGACTGGTTTCATTTGTGGTTTCTGCGTTGACCAGTTCTTCACAGCTGCTGAACTGAAAATGCACACACTTGAAAACCACGTCGAGGACATACCAAGATTTATGGGTGGGATTGCTATGTATTCCTACATCGTCAAGCTGGACATAACATCTCTTCGATGCGTGATGTGCACTCGCAAAATTTTCACTCTAGAGCTACTTATAGAACACTTGGAGACTAAACACGATAAAATGTTCTACAAAGGTATTAAGAACCATATAATGccttttaaatttcaaagtGATATCTTCTCCTGCGTTATTTGCGACCGTCGATTCGACCGTTTCCAACAGATGCAGCGGCATATGAGCGTACATTACAGAAACTTTGAATGCAACTACTGCACCCAGGCATACATTAATAGAGCTACTTTAAGCACCCACATCGTACGGCATGAACTAGGGATCTTCAAATGTAGGTTTTGTGCAAAATGTTTTAATACGAAGGAAAGGTTGACTTGTCACGAAAAGTTTGTGCATGTGACTGATCATAAACGAAATAAATGCACGTATTGCAATGAGTTCTTCACGCGATACATGAAGAAGATGCAACATATGGTCGacgttcacggacataagcaGCGCGTTGTCAAATGCAATGCTTGCAACAAGACATACAAAACTAAAGAGATGCTAACGCTACACAAAAAGAGAAATCATCTCTTAGAGCGCAACTACAAATGCAACGTTTGCGAAAAATGTTTCTTCAGTAACTATGAATTGCGGAGACATAACCGCACGCATTATGATGCTAAGCCTTTTACGTGTGAATTTTGTAACAAGGGCTTTAAACGCAAAGATAATATGTTGGAACATTCGCGTAAACAAGAGCTCGCACGCGTGAAACCAGAGTTCGATAAACCCAACCCTGAAGAATTGCAAAAGCAAAGACGTCATCTGAGACAAATACTGCTGTCAACGAATGCAACGCCGATCAGGCGCCATACTGACATGGGCTACGGTTGCGGTTTCTGCGCAAAATGTTTCCCTAAACCAGCAGATCTCAAAAAACACACAATAGGCTTTCACGACGCTGAAATGAGAGcgtcgtttatgaataagacgtGCCTCTCAAGACTCCTGGTCAAACTGGACGTGACAGATCTAGAGTGTAATATATGCAGCGAAAGCATAGACTCTTTTGCAGAAGTAGCAGAACATCTCAGTGCTCACGGAAAATTAATGCACAGCGATATAAAGAACTACATAATACCTTTTAAATTCGACGACGGCCTTCTAAAGTGTTCTCTGTGTTTCGAAGTTCATAGGAAGTTTCTTTCCCTGCAGATTCATATGTACGGTCACTATAGAAACTTTGTATGTCATGTCTGTAGCGCGGGCTTCATCAATCAACAAATAGCCTACAAGCACTATATAAACTGCCACAAAATCGGCTGCTTCCCTTGCTCGTTTTGCGCGGAAATATTCGACACTGTTAACAAGAAGAAGAATCACGAACATAACAGTCATGACAAGCCGCAAAAACACAAATGCGGCTACTGCGATGAGATGTTCAAGAGCTTTGAAATGAAGCGGCTGCATCAGATCAGCGAGCACGATATCAAGAGCTCCACGTTCGACTGCACCTCTTGCAGCAAACGATTTTCGAAGCCTTCCTTGCTGGGCATCCATATAAAGAAGGATCATCTTAATGAGACCCGTTTTAAGTGCTTCAGTTGCGATAAAGCATTCTTCTTTAAGTATCAATTGGATACGCACGAAATCAGTCATACGCGTTCGAGGGGTTTCAAATGCGAGATTTGCGACAAGCTCTTTTCGCGAATGAAGACTCTGCGCGAACATGTGAAGATACACGCGGACGAACGCCGGTTTCGTTgTATCGTCTTCAGTGACGTCAAACCCATAAAACTGGAAATAGAATgggatttagaaaaaaaatcggATGTAAATGCAACAAGTTTAAAAGAAGAGAAAATGGAATCGAAAACCAGTAAAAATAGAGAAAAAGGAACTTCGAAAAGGGCGGTAAAGAATAAGAAAGTTGATAGCGTGAAATCGGAGAAATTCCAACCATTGAAAATCAAACCACCAGCAAAAGCGGAGCTTTTAGACGTTGATAAACATCGATATAACGTGCGAGCGATATTGCAATACTCGAATGCTACACCGATCAGGGCTCATTATGCCGGTAATGGGTACGCGTGCTGCTTCTGCAAACAGTATTTCCACAAGGCATCAGAACTCAAGACGCACACTTTACAGACTCATGACGatcaaacaaaaagaaaatacatgCAAAAGGCGTTTCTCTTTAAACTCTTTGTAAAACTCGATATTACTTTCTTGCGTTGCGGCATTTGCGCAGAGGAAATGATAAATTTAGACGATCTAATCGAACACTTGAACTTCGCGCACCAGAAAGGTATTCATACGGATGTTAAAAACCAAATCATGTGTTTTAAACTAGACGATGATGCATTTAGATGCTTTGTATGCTCAGTGGAGTATCACAGCTTCAAAAATTTGTTAGAGCATGCACATACACACTATAGAAACTTTGTATGTGACGTATGCGATGCGGGGTTTATCAATCGGTTGAAACTATACGGGCATGTATACAATAAACATAAAGGCGCGGGCTGTCATAAATGCGGTACTTGCGATAAAGTTTTCGACACACCTATCAAACTAAAGACACACGAACGGATCCACGCTGGCACGGTGCTGTACAAATGTCACGAATGCGGTGCGAAATTCCCAAAAAAAAGAGAGAAAAGAGATCACATGATAAATGTGCATGGAGCTAAATTCGCACGGATCAAATGCACGGCGTGCGACAAGTTGTTTATCAGCAAAGCGTCTCTTAGCGTCCACATCAACAGAGATCATTTGATGGACAGGCGGCACCAGTGTGAACTCTGTGATAAAACCTTCTTTACTTCATCATTCTTGAGAGATCATATGGTATCCCACTCTAGGGTCCGAGAAATCCAGTGTGATGAGTGCCCTAAAACGTTTGCAAGGAAGAAAGCTCTCAGAGAACACATGAAATCACATACTGGTGATCGACGATTCAAATGTACTTACTGCGACATGGCTTTCTTGCAAAAGTGCAGTTTGAAAGGGCACTTGCgTGTCGACGTCAGCGACAACAAAGCAATAAAATCAGAAGTAGAAAACTCTTGGGGAGTAACTATTGTAAAAGTAAAAGGTCTGAAATCTGACGACGCTCCTACAAAAATTGATGATATTGAACTTAAAACATCACAATCTAATGAACGCCAACCAAAGACTAAAGATTTCCAAAAAACTGATGAGACTTTGCTCAAAAGAGCGACTAAACCGAAAAAGAGGTTAAACATTGAACAGGTAACAGTTGAATGCCTGAAATCGATCGAAGACTCGTCGATAAATGTCGAGAGTAAACCCAAATTGAAATTGAGTACACGTCCATCAAAAAAAgcatcaaaaacaaataaaaatcctCCAGCTCAAAGGATTATAATAAACCCTCCTCCAGACGTTGACTTTACAAAGAAAATTAAAGCCGGTGAACACTTATCTAAACTCGTTGCTAAACTTAAAGTAATCCAACCaagaaaaaatcaaataatcaaACCAGCAAAGCTAAACGAGCCTCCAGTTCAAAGAATCAAAATAATTCCTCCTCCAGATATGGATTTCATGATGGAACTGGACAAACATCGGTTTAACATTCGGACTGTTATGCAAAACTCGAATGCGACACCCATAAGAAATCACGTTAAAAGCGGCTTTGTCTGCTGCTTTTGCGATGCTCACTTCCCCAAGCCCGCGGACCTTAAAATCCACACTATTCAAAGCCATGCTGACGACGATAGTAAAGAGAAATTCTTTCGAAAAAAAGCCGTTTTGTACTCATTTATGGTAAAACTTGATATAACCTCGCTTTCTTGCAACAATTGTCACATCGCGGCGGACACTCTTGACCAGCTCATCGATCACCTTAACAGCACACATAAGAAAGGCCTGCACACAGACATAAAAAACCACATCGTATGCTTCAAATTCGACAGCGAAGTGATGAGATGTCTCATCTGCTTATTAGAATTCAACAGCTTCAAACTACTATCGGAACATATGAATCAGCATTACACAAATTTCGTGTGTGATGAGTGTGGGGCTGGTTTTATTAACAGAAGACAGCTGCTTCTTCATTCAGATAAGCACAAAGTAGGCGCTCATCAGTGCGGCTCTTGTGACAAAGTGTTCCAGTCCTTAAAGAGGATGAAGACTCATGAACGTATAACTCACATCTACAATTCTGGGCTTGGAACGCACGGGTATAGGTGTGCCCACACCAAAGACcacaaaacaattaaaacggAACTAGATGTCTCGTGGGAAGTAACTATAGTTAAAGTTGAAGAAGCACAAAAGATTGTCGATGATAACCGATCAACGCAAGGCAAAATACgagaaaacaaacaacaaagacCTGACGAGATCTTGATTCAAAGAAAACAGCAAGATCTATCTTCGGATACTTCGGAGCTTGATAAACACAGATATAACGTTCGAACACTATTACATTGTTCAAACGCTACTCCTATCCGAACGCACTCCATCGCAACTGGTTACTCATGCTGTTTCTGCAAAGCGCATTTTCCAAAAGCTGCTGACCTCAAAACGCACACCATACAGGATCATGACGATGCAACAAAGAACAAATTCCTGCATGGAACAACTTTGTTTTCGTTCATCGTAAAACTCGATATAACATCGCTTAGCTGCAACATATGCAGCGAGGCCACGGATACCCTCGAGCAACTAATCGAACATCTCAACGTAATGCATCATAAAGGGCTTCACTCCGACATCAAAAGCTACATCGCATGCTTCAAACTCGATAGAGAAGCGATGAAGTGTCACATTTGCTTGGCAGAATATAAGAGCTTCAAATTTTTACTGGAGCATATGAACAAGCACTCGACTAATTTCGTTTGTGACGAGTGTGGTGCAGGTTTCATAAATCTGGGGCAGTTAAAATACCATACTGACAATATACATTTAGTGGGTGAATATAAATGTGGCACGTGCGACAAAATATTTCCATCTTCCAAGAAAAAGTACTTCCACGAGCGTGCTTCGCATATTCAATCTTCTAAGAAGAGGCAGACCAATGAGCTTGTACGCGCTTTTATTAGTAAACAATTGAATGCCTCGAATATGGGAGAGAATTCCAATGTATAG
- Protein Sequence
- MGLSTKTSGAKTTASTRTKKKQDKNAETKKADDAKIVEEIKSNEGLATKSNAAKTTRTKTRKTQDKNVDKKKAEDAKIDKDIKEKKRNDAKKVKSSDSIKTKDTEKVKSLTVSAEKKKDTKNVDDSKKKEKSKIVREKNKSRKKLRKDDDVIEIHDDDTRQDKKKKSKDKKRSKTDDDVIEIHDDNSKSAKKKKSKSKKRSRKDSDVIEIIDATNSLKRKKTKSKTMPRKDGDVIVIPESIARNSKNRKTDDKNNEKSNDESKTMPRKDGDVIVIPESIARNSKKQNTDDKNNKKDNDFEICTRTKKNDAFFAIELTEIQKHLHNIRTILMHSNATPIQSHNETGFICGFCVDQFFTAAELKMHTLENHVEDIPRFMGGIAMYSYIVKLDITSLRCVMCTRKIFTLELLIEHLETKHDKMFYKGIKNHIMPFKFQSDIFSCVICDRRFDRFQQMQRHMSVHYRNFECNYCTQAYINRATLSTHIVRHELGIFKCRFCAKCFNTKERLTCHEKFVHVTDHKRNKCTYCNEFFTRYMKKMQHMVDVHGHKQRVVKCNACNKTYKTKEMLTLHKKRNHLLERNYKCNVCEKCFFSNYELRRHNRTHYDAKPFTCEFCNKGFKRKDNMLEHSRKQELARVKPEFDKPNPEELQKQRRHLRQILLSTNATPIRRHTDMGYGCGFCAKCFPKPADLKKHTIGFHDAEMRASFMNKTCLSRLLVKLDVTDLECNICSESIDSFAEVAEHLSAHGKLMHSDIKNYIIPFKFDDGLLKCSLCFEVHRKFLSLQIHMYGHYRNFVCHVCSAGFINQQIAYKHYINCHKIGCFPCSFCAEIFDTVNKKKNHEHNSHDKPQKHKCGYCDEMFKSFEMKRLHQISEHDIKSSTFDCTSCSKRFSKPSLLGIHIKKDHLNETRFKCFSCDKAFFFKYQLDTHEISHTRSRGFKCEICDKLFSRMKTLREHVKIHADERRFRCIVFSDVKPIKLEIEWDLEKKSDVNATSLKEEKMESKTSKNREKGTSKRAVKNKKVDSVKSEKFQPLKIKPPAKAELLDVDKHRYNVRAILQYSNATPIRAHYAGNGYACCFCKQYFHKASELKTHTLQTHDDQTKRKYMQKAFLFKLFVKLDITFLRCGICAEEMINLDDLIEHLNFAHQKGIHTDVKNQIMCFKLDDDAFRCFVCSVEYHSFKNLLEHAHTHYRNFVCDVCDAGFINRLKLYGHVYNKHKGAGCHKCGTCDKVFDTPIKLKTHERIHAGTVLYKCHECGAKFPKKREKRDHMINVHGAKFARIKCTACDKLFISKASLSVHINRDHLMDRRHQCELCDKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTYCDMAFLQKCSLKGHLRVDVSDNKAIKSEVENSWGVTIVKVKGLKSDDAPTKIDDIELKTSQSNERQPKTKDFQKTDETLLKRATKPKKRLNIEQVTVECLKSIEDSSINVESKPKLKLSTRPSKKASKTNKNPPAQRIIINPPPDVDFTKKIKAGEHLSKLVAKLKVIQPRKNQIIKPAKLNEPPVQRIKIIPPPDMDFMMELDKHRFNIRTVMQNSNATPIRNHVKSGFVCCFCDAHFPKPADLKIHTIQSHADDDSKEKFFRKKAVLYSFMVKLDITSLSCNNCHIAADTLDQLIDHLNSTHKKGLHTDIKNHIVCFKFDSEVMRCLICLLEFNSFKLLSEHMNQHYTNFVCDECGAGFINRRQLLLHSDKHKVGAHQCGSCDKVFQSLKRMKTHERITHIYNSGLGTHGYRCAHTKDHKTIKTELDVSWEVTIVKVEEAQKIVDDNRSTQGKIRENKQQRPDEILIQRKQQDLSSDTSELDKHRYNVRTLLHCSNATPIRTHSIATGYSCCFCKAHFPKAADLKTHTIQDHDDATKNKFLHGTTLFSFIVKLDITSLSCNICSEATDTLEQLIEHLNVMHHKGLHSDIKSYIACFKLDREAMKCHICLAEYKSFKFLLEHMNKHSTNFVCDECGAGFINLGQLKYHTDNIHLVGEYKCGTCDKIFPSSKKKYFHERASHIQSSKKRQTNELVRAFISKQLNASNMGENSNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -