Cpec020376.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596376.1:3864278-3870728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0084 0.48 11.4 0.3 1 23 77 99 77 99 0.94 2 19 4 2.3e+02 2.9 0.1 2 23 128 150 127 150 0.88 3 19 0.012 0.67 10.9 2.0 1 23 172 194 172 194 0.99 4 19 0.016 0.93 10.5 0.0 1 23 198 220 198 220 0.97 5 19 0.00013 0.0075 17.1 2.4 1 23 225 248 225 248 0.95 6 19 0.034 2 9.5 1.3 2 23 255 277 255 277 0.96 7 19 0.00022 0.013 16.4 0.2 1 23 284 307 284 307 0.98 8 19 5.9e-05 0.0034 18.1 3.8 1 23 313 335 313 335 0.98 9 19 1.3e-05 0.00076 20.2 0.6 1 23 341 364 341 364 0.96 10 19 0.0006 0.034 15.0 0.9 1 19 372 390 372 392 0.97 11 19 0.13 7.3 7.7 0.2 1 23 443 465 443 465 0.91 12 19 0.37 21 6.2 0.0 2 23 494 516 493 516 0.93 13 19 0.0003 0.017 15.9 1.5 1 23 537 559 537 559 0.98 14 19 0.063 3.6 8.6 1.8 1 23 563 585 563 585 0.98 15 19 0.0039 0.23 12.4 0.4 2 23 591 613 590 613 0.92 16 19 2.4 1.4e+02 3.7 0.6 3 20 621 638 620 642 0.82 17 19 9.3e-06 0.00053 20.7 0.6 1 23 649 672 649 672 0.97 18 19 0.0015 0.085 13.8 1.8 1 23 678 700 678 700 0.96 19 19 4.1e-06 0.00023 21.8 7.0 1 23 706 729 706 729 0.98
Sequence Information
- Coding Sequence
- ATGATGGGGTTCTTCCGTTTAAATTGGATCAAGGATCTTTTAAATGCGGTGTCTGCAATGACAGgTGATCCGCAACAGAGGTCGTCGCAAGACAtgatcgataaaaaaaaacaaatgcaaaaTATTCAGGCAATAGAACAATCTGAACACAAACTTCACCGAAAGTTGTGCCTTATAAAGCTTCTAAAGAGCTCAAGAATATGTCCATTTAGGTGGGCAAATAATACTTTCATCTGTTTTTACTGCGACGACCGATACACAGATCCGTCAGAATTAAGGGAGCATAATTTATTACATGACGATATCAAAGACTCGGCAATAAGCAGCGCACTCACTAAAATAAGAGCCACTGATTTATTGAGAGTAGATATAACGGATGTCAGCTGTAAACTTTGCGACGCGGGTATAGAAGAATTGGATGAATTAAAAACTCATTTAGTCCAAAAACACAAGCACAACTCAATTATTTTAACAGATGATGGGGTTCTTCCTTTCAAATTGGATCACGGATCCTTCAAATGTGGTTCTTGTAATGCCAATTTTCCCGAGTACAAAACACTTCTTCACCATTTAAGGAGCCATTTCCAAAAGTATATTTGCGAGCAGTGTGGTTCTGGGTTTATTTCTGAAGGTGGCTTGCAGATGCATAATGCCACGCACGAAACGGGTTCTTTCCCATGTAATGAATGTGACAAAGTATTTCGAACAAAACAATATAGACAACACCATGAGAAGATAGTTCATTTGAAAACTAAGTTGAACAGATGCCCTCACTGCTTCGAGGCTTTTATGAACTACTCTCAAAAGTTGAATCATATTTCTTCAGTTCACGGAATAAAAGTTAAAGAGTTCAAATGTAATATCTGTCCGAGCGTATTTATGCTCAAAGGAAAGCTAAATGCACACATTCGTATAACTCACGAGAAAGAGAAACCTCACACGTGTGATGTGTGTGATGGGAAATTCAGCACTAAACATGCATTGAAAAGGCACATACTTAAGCATACAGGGGAGAAAAACTATCAGTGTGGGATATGTCAGAAAGCGTTCGGCCGAAATTCGACGTTGCGACAACATAATATGCGAATCCATTCAACTGATCCTGATAAGCAGTTCGTGTGTGGTATTTGTGGGAACTCGTTTAAGCAGAAGTGTAGTCTCAAGCAACATGgtgTCAATCAAACTTCACACAAGAATCAAGAAGATAGTTTTACAAGCAAACATCCGAAGACTCAAGTAATACAAACTAACCGCGCTAAAATACAAAGTATAATGCAACTACTAGAATGTTCCAGAGTATTACTGTTTAAACAaaagggtattttatttatgtgcatATACTGCAATCAGAGATATGCAGATCCTGCAAAATTAAGAGAACATTTTATTGAACACGAAGACATCAAACCTGTAGAGATACAAAAAGCAATTGCCAGGATGAATAAAACAGAGCTATTCAAAGCAGATATCACAGATGTCAGCTGTAAGCTTTGTGACACTCCTATAGAAAAACTTGAAGATCTAATAGCACATTTATTGGAAAAGCATAAAAAGAAAATCGATAACGACAGTATCGGAATACTCCCTTATAAAATAAACCTCAACGATTATAAATGCGTTATATGTCGTGAAGAATATACAGATTACAAGGCTCTCAATCACCATATGAACCTCCATTACGCAAGATTCGTTTGTGAACGATGTGGGTCTGGGTTTGTTACTGCGATGAGATTTAAGTCACACGTTTGCAAACACGAAAATGAATCTATTCCATGCAACGCGTGTAATAAAGTGTTCAGTTCTAAAAATTCAATGAGCTCACATTATTCATACGTCCACATGAAAGTGAAAACACGCTGCTGTCCTCAATGCCCTGAGAAATTCTTTAACGTTGTTCAAAAATTGAATCATCTGGTAGCAATTCACGGTATTAAAATGGACGAATTTAAGTGCAATTTATGTCCTAAAGTTTTTTCACTTAAAGGAAAACTCCGCTTGCACATTCGAGCCACGCATTTAAAAGAAAAGCGTCACGCTTGTAACCTATGCGAAGCAAAGTTTTTTGGTAAAAGCGAGTTAACAAAACACATGTATAGTCATACTGGGGAGAAGAATTTTAGGTGTAATATATGTCAAAAAGCGTACAGTAGAAATTGTCACTTAAGAAGGCACATGCGTAGTACACATGGTGTAAAATATTAA
- Protein Sequence
- MMGFFRLNWIKDLLNAVSAMTGDPQQRSSQDMIDKKKQMQNIQAIEQSEHKLHRKLCLIKLLKSSRICPFRWANNTFICFYCDDRYTDPSELREHNLLHDDIKDSAISSALTKIRATDLLRVDITDVSCKLCDAGIEELDELKTHLVQKHKHNSIILTDDGVLPFKLDHGSFKCGSCNANFPEYKTLLHHLRSHFQKYICEQCGSGFISEGGLQMHNATHETGSFPCNECDKVFRTKQYRQHHEKIVHLKTKLNRCPHCFEAFMNYSQKLNHISSVHGIKVKEFKCNICPSVFMLKGKLNAHIRITHEKEKPHTCDVCDGKFSTKHALKRHILKHTGEKNYQCGICQKAFGRNSTLRQHNMRIHSTDPDKQFVCGICGNSFKQKCSLKQHGVNQTSHKNQEDSFTSKHPKTQVIQTNRAKIQSIMQLLECSRVLLFKQKGILFMCIYCNQRYADPAKLREHFIEHEDIKPVEIQKAIARMNKTELFKADITDVSCKLCDTPIEKLEDLIAHLLEKHKKKIDNDSIGILPYKINLNDYKCVICREEYTDYKALNHHMNLHYARFVCERCGSGFVTAMRFKSHVCKHENESIPCNACNKVFSSKNSMSSHYSYVHMKVKTRCCPQCPEKFFNVVQKLNHLVAIHGIKMDEFKCNLCPKVFSLKGKLRLHIRATHLKEKRHACNLCEAKFFGKSELTKHMYSHTGEKNFRCNICQKAYSRNCHLRRHMRSTHGVKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -