Basic Information

Insect: Colostygia pectinataria
Gene Symbol: -
Assembly: GCA_951394395.1
Location: OX596377.1:925306-938963[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.8e-05 0.0022 18.8 5.5 1 23 166 188 166 188 0.96

2 15 0.0015 0.084 13.8 1.2 2 23 210 231 209 231 0.95

3 15 0.00011 0.0063 17.3 3.8 1 23 237 259 237 260 0.96

4 15 0.0068 0.39 11.7 1.2 1 21 266 286 266 287 0.94

5 15 0.00011 0.0061 17.3 0.3 1 23 298 320 298 320 0.98

6 15 5e-05 0.0029 18.4 0.7 3 23 328 349 326 349 0.94

7 15 8.9e-07 5.1e-05 23.9 2.3 1 23 355 377 355 377 0.99

8 15 0.00037 0.021 15.6 1.6 1 23 383 405 383 405 0.98

9 15 0.00025 0.015 16.2 6.7 1 23 415 437 415 437 0.98

10 15 2.5e-06 0.00014 22.5 2.4 1 23 443 465 443 465 0.98

11 15 0.00094 0.054 14.4 2.3 1 23 471 493 471 493 0.97

12 15 0.001 0.058 14.3 0.8 1 23 499 522 499 522 0.97

13 15 5.8e-05 0.0033 18.2 0.1 1 23 528 550 528 550 0.96

14 15 0.029 1.7 9.7 0.1 1 23 558 580 558 580 0.95

15 15 0.0068 0.39 11.7 1.3 1 21 586 606 586 607 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.8e-05	0.0022	18.8	5.5	1	23	166	188	166	188	0.96
2	15	0.0015	0.084	13.8	1.2	2	23	210	231	209	231	0.95
3	15	0.00011	0.0063	17.3	3.8	1	23	237	259	237	260	0.96
4	15	0.0068	0.39	11.7	1.2	1	21	266	286	266	287	0.94
5	15	0.00011	0.0061	17.3	0.3	1	23	298	320	298	320	0.98
6	15	5e-05	0.0029	18.4	0.7	3	23	328	349	326	349	0.94
7	15	8.9e-07	5.1e-05	23.9	2.3	1	23	355	377	355	377	0.99
8	15	0.00037	0.021	15.6	1.6	1	23	383	405	383	405	0.98
9	15	0.00025	0.015	16.2	6.7	1	23	415	437	415	437	0.98
10	15	2.5e-06	0.00014	22.5	2.4	1	23	443	465	443	465	0.98
11	15	0.00094	0.054	14.4	2.3	1	23	471	493	471	493	0.97
12	15	0.001	0.058	14.3	0.8	1	23	499	522	499	522	0.97
13	15	5.8e-05	0.0033	18.2	0.1	1	23	528	550	528	550	0.96
14	15	0.029	1.7	9.7	0.1	1	23	558	580	558	580	0.95
15	15	0.0068	0.39	11.7	1.3	1	21	586	606	586	607	0.92

Sequence Information

Coding Sequence: ATGTGCGCTACTGCTACGGTGTGTCGAGCGTGTTTGTGCGATGGAGTGCGCATGCAATCCGTCCGAGATTTGCGGCTGCAGAACATTTATGAGAAACTTACCAGCGCCAAGCTTATCACAGGAGACAGCAGACCGAGCACAGTCTGCTATATGTGCTACTCTATGATGGAGAGGTTTCGAAGGTTCTCCGACATGGCGAGCAGATCTGACAAGATCTTGAAAGACCTACTGCTGAATGCCATGAAGGTCACAAATGTAACAGTTGCATCTTTAAAGGTTGGACTTTCCCAAAACCTATCTCTAACCACTTTAAAAGCTATATCTTTCGATGGTGTTTCAATAGAAGCGAGCAGTCATATATCTTATGATACCCCCAGTGCTGTTAAACATGAAATAGATACAGAAGACATTACCAAAATAGAAAAAAGCTTTTTAGAAGATAATTCACATATGGATATTAAAAGTGAAAACGGTTTGAACGACATCACAGATGATCATTGCTGTAATGTTTGCCAAAAGACATTTACGACAAGAAGAGAACTGGAAATCCATCAAAGACTCCATAATAGTCTCACAGATAATGTGGTATGTAAAAGTGAGAAGACCGAAACTGCGAGCAAAGAGATACGTTGCAACGTCTGTCACAAATTGTTCTCCGAGCCGAAATCTCTTAAGGTGCACTCTAGTGTTCATACCGGTGTTAAGCCCTTCCAGTGCGATCACTGCAGCCAAGCGTTCCGCGTGAAACAGAGCCTCCAGAACCATATAACAGTTCATCACAGTGGAAAGAAAAAATTTGTCTGCGATAAATGCAGTAAATCCTTCTTTCTCAAAAAAGGTTTGATCTCACACAAAAAATCTCCCAAATGTCAGTCTTCAGCGTACACACCGTACGCGTGCAACAAATGCGATGCTGTATTTACTGGCATGGACTCTCTGAGGGTACACAAACGCAGCCATCTTGGTGAAAGACGTTACGGATGCTCAAACTGTGACAAGGCTTTCACTAACAATCGATACCTGATAAAGCACAGACTTCAAGTCCACTCAACAGAAAAGCCGTACACGTGCCAAAAATGCAGTCGAACCTTCAAGCAGGCAAGCTCACTGAAGATACACCAAAAAGTTCACACCAATGAGGAGTTGTACAGCTGTAAAACATGCGGCGATACGTTTCTCCGCAAGTCGTCGTTGGAACGACATGCGCGCCGGCACCAGCCGCAGTCGCGCGACGAGTGGGCGTACTGCTGTGATAGATGTAGCAAGAAGTTCCGATCGAAAGCCAGCTTGAAATCACATTTCAGGACGCACACGGGAGAAAAGCCGTTCTCCTGCGAGACGTGTGGAAgaagGTTCAGCCAGAAGGGCAATCTACATCTACACCTGAAGATCCACTTCGGGGAGAAGACATTCGCGTGCGAGATGTGCGGGAAGACCTTCCTACTGAAATGTCAGCTGAAGTTACACCAGAGgGTCCACAGTGCGGAGCGACCGTTCGCCTGTAATCTGTGCGAGATGAAATTCAGTTTCCAGAACGTACTAAAAGTGCATCTGCGACGGCTACACTCTGAGATGAAGGAGTTCGCATGTATGCGGTGCGGCAAGTCGTTTGCTACATCGCAGTTGCTCGCCGCGCATGCGCGCTGGCACCTGTTCCCGCGCGCGCGGCGTCACGCATGCGCAGTGTGCTTGCGGCGCTACGCCTCGCGCGCCGGGCTCGCGCGCCACGCCGCCACGCACAGCGCCGCCACGCCGCACGCATGCGCGAGGTGCGACAAGGCATTCAAGATTAAACGATACCTGAACCAGCACAGGAAGAGTGCTAGCTGCCAAGCGAAGGCGCTTGCCGACGcctag
Protein Sequence: MCATATVCRACLCDGVRMQSVRDLRLQNIYEKLTSAKLITGDSRPSTVCYMCYSMMERFRRFSDMASRSDKILKDLLLNAMKVTNVTVASLKVGLSQNLSLTTLKAISFDGVSIEASSHISYDTPSAVKHEIDTEDITKIEKSFLEDNSHMDIKSENGLNDITDDHCCNVCQKTFTTRRELEIHQRLHNSLTDNVVCKSEKTETASKEIRCNVCHKLFSEPKSLKVHSSVHTGVKPFQCDHCSQAFRVKQSLQNHITVHHSGKKKFVCDKCSKSFFLKKGLISHKKSPKCQSSAYTPYACNKCDAVFTGMDSLRVHKRSHLGERRYGCSNCDKAFTNNRYLIKHRLQVHSTEKPYTCQKCSRTFKQASSLKIHQKVHTNEELYSCKTCGDTFLRKSSLERHARRHQPQSRDEWAYCCDRCSKKFRSKASLKSHFRTHTGEKPFSCETCGRRFSQKGNLHLHLKIHFGEKTFACEMCGKTFLLKCQLKLHQRVHSAERPFACNLCEMKFSFQNVLKVHLRRLHSEMKEFACMRCGKSFATSQLLAAHARWHLFPRARRHACAVCLRRYASRAGLARHAATHSAATPHACARCDKAFKIKRYLNQHRKSASCQAKALADA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -