Cpec020420.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- ZFAT
- Assembly
- GCA_951394395.1
- Location
- OX596376.1:4181385-4191384[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.12 7.1 7.7 0.1 2 23 167 189 166 189 0.95 2 28 0.039 2.2 9.3 5.1 2 23 212 233 211 233 0.98 3 28 0.0011 0.062 14.2 0.1 1 23 237 259 237 259 0.94 4 28 0.0013 0.074 13.9 2.1 1 23 264 287 264 287 0.96 5 28 0.0057 0.33 11.9 6.6 1 23 293 315 293 315 0.97 6 28 0.00016 0.0092 16.8 1.5 2 23 323 345 322 345 0.96 7 28 2.5e-05 0.0014 19.3 0.9 1 23 351 373 351 373 0.98 8 28 0.0047 0.27 12.2 1.9 1 23 379 401 379 401 0.98 9 28 2.4 1.4e+02 3.7 0.2 1 10 407 416 407 423 0.85 10 28 8.5 4.9e+02 1.9 1.4 1 23 586 609 586 609 0.94 11 28 0.057 3.3 8.8 0.2 2 23 636 658 635 658 0.95 12 28 0.0018 0.1 13.5 3.6 2 23 681 702 680 702 0.98 13 28 0.01 0.6 11.1 0.2 1 23 706 728 706 728 0.95 14 28 8e-05 0.0046 17.7 2.1 1 23 733 756 733 756 0.96 15 28 0.003 0.17 12.8 4.6 1 23 763 786 763 786 0.95 16 28 0.00065 0.037 14.9 2.6 2 23 794 816 793 816 0.96 17 28 0.00091 0.052 14.4 0.4 1 23 821 843 821 843 0.97 18 28 2.7 1.5e+02 3.5 3.9 1 13 849 861 849 863 0.92 19 28 0.82 47 5.1 0.6 1 23 929 952 929 952 0.93 20 28 0.15 8.9 7.4 0.1 2 23 979 1001 978 1001 0.95 21 28 0.00075 0.043 14.7 0.2 2 23 1024 1045 1023 1045 0.97 22 28 1.6e-05 0.00095 19.9 0.1 1 23 1049 1071 1049 1071 0.99 23 28 0.011 0.66 11.0 1.8 1 23 1076 1099 1076 1099 0.96 24 28 0.43 25 6.0 0.6 2 22 1106 1126 1105 1128 0.80 25 28 0.00058 0.034 15.0 2.5 2 23 1136 1158 1136 1158 0.97 26 28 0.00019 0.011 16.6 0.4 1 23 1164 1186 1164 1186 0.97 27 28 0.00029 0.017 16.0 4.3 1 23 1192 1214 1192 1214 0.98 28 28 0.00045 0.026 15.4 5.1 1 23 1220 1243 1220 1243 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTAATTGAACTGTTGGAAGAACCGCTTGAAGTCGCATCAAAGGTCGATGGTAAACCTACAACAGTTCAAGCCAGAAACAGCCAAACGACGACGAAACAACCTCGAAAACCAAATAAGACTCAAATACAAACAAACTTCATAAAATCTCCTTCCCTTTCAAttgaaaaaatcaaaatcataccGACAAAAGTTCACGCTCCAGCGGTTCAAGGTATAAAAATAGAACCTTTGGTGAAACAATATTCAATGCAGGAGATCGATAAACATCGATATAACATTCGAACTATATTACAGTATTCGAACGCCACTCCGATACGAACGCATTACATCGAAAGTGGATACTCCTGCTGTTTCTGCAAATCGCATTTCCTTAAAGCTGCGAATCTCAAGACGCATACCATACATGATCATGAcgataaaactaaaaacaagtTTATGCAGCAAAACATTTGTTTAGCTACGTTTAAAGTTAAACTCGACATTACTTCACTAAACTGCAACGTTTGCAGCGAGAACACAGATACCCTTGAGCAACTCATCTACCATCTCAACATCGCCCATAAGAAAGGGATCTACACTGatattaaaaatcaaatcaTGTGTTTCAAACTCGATGGAGTGGTGATGAAGTGCCACATTTGTTCACAAGAATATCATAACTTTAAATTGTTACAAGAGCATATGAACAAACACATTCTCAATTTTATCTGCGATGAGTGTGGAGCAGGCTTTATCAATAGAAACCAGCTTAAGTCTCACTCAGATGTACATAAAAAGGGAACTCACAAATGCGACGCATGTGACAAAATATTTAACACATCAATAAGATTAAAGAGTCACATACGACAAACACATACTGCCACTTTATTGCACAAGTGCCATCTATGCAATGAAAGATTTAAAACAAAGACATCCAAGATAAATCACATGAAAGCACACGGAGTCGTATATGCCGACTTAAAATGCGATGCTTGCAATCGGACTTTCAAAACGAATAACACTCTTCGGCTCCACATAAAAAGAGATCATTTGATGGAAAGACGGTACAAGTGCGAGGTATGTGACCGTGAATTTTGCACTGCAGATATGTTGAAGGACCACGAAATAACACACACTGGGCAGCGAGACTTCAAGTGCCACGTGTGTTCTAAATTATATGCAAAAAAATGGGCACTCATAGAGCACTTTCGGTCGCACACTGGTGACCGCAGATTTAGGTGCACTTACTGTGAAATGACCTTCTTGCTAAAGTCCAGCTTGATAGGTATCGACTTCAAAGTCTATGAATTGTTGGAAGAACCGCTGGTAAACATTGAAGACGCATCAAAGGCCGATCATAAATCTACAACAGTTGTGGCCAGCAAACGCCAAATGAACTCAAAACAATCTCCAAAACCAGACAAAACTCCAATTCAAAGAAACTTAATCAAAATGCCATTATGCAAAGACCCGTCGAGTGAGGCTTTCGAGATACTGATCGCTCGAGGTGTCGACATCAAAAACcacaaaacttttaaaacgGAACTAGAAGTTTCTTGTGGAATCATCAAAGATGAAGACACGACAAGCGTTGAAAACGTTGAGACCACAGATACCAGGAAAACCCAAATAAAGAAGAAAACATATCAAAACAATTCAACAGACAACTTTTCAGCGAAGTTGGAGCTGGTTAAACACAGATTTAACATTCAAATACTATTACAATGTTCTAACGCCACTCCGATCAGAACGCATTACGTCGGGAGTGGCTTCATTTGCTGTTTTTGCAAAGCAAATTTCCTCGAAGCTGCAGACCTCAAAACACACACGCTAAAAGACCACGACGATGAAACTAAACACAAATTTATGCAAACCACTGGGTTGTTTAGTTTCACAGTCAAACTAGATATAACAACGCTGAGTTGCAAGATTTGCAGATGGCCTGCAGAGACTCTTGAGCAGCTAATTCATCATCTCAACAGCGCTCACCAGAAAGGGCTCCATACTGATATCAAAAGTCATATTGCGTGTTTTAAATTCGACGGGGAAGGGATGAAGTGTCACATTTGTGCGGTAGAATTCAACAGCTTCAAACATCTACAAGCGCACATGAACAAGCATTTTTCTAACTATATTTGCGATGTCTGCGGTGCCGGTTTTATCAACAGACATCAGCTTGGCATCCATTCTGATAAGCATCTAATCGGCTCCCATAAATGCGGGGATTGTGATAAAGTTTTCATGTCGTCGAAGAAGCTAAGGGCACATGAGCGCCAATCGCATATAGCATTTATGGAGCAGTACAAGTGCTTTCATTGCGGAGAGAAATTTAAAAACCGGAACACAAAAAAGAGTCACATGATTGAGTCCCACGGAGTTCAATATGCAGACTTGAAGTGTGACGCTTGTGATAGGACCTTCAAAAGTTCTAAAAGCATGCAGCGGCATAAGAAGAGAGATCACTTGATGGAGAGATATCCTTGCGGGTTATGTGACAGTGTGTTTTGCAGGCCAGACCGTTTGAAGCGTCATGAAATAATACACTCTGGGGTTCGAGAGTTCAAGTGTGAACTGTGCTCAAAATCGTATACGAGGAGATgTAAAGTGCCAATCAAAcaggaaataaatgaaataaaagaggAGGCAGTGACAGCAGACTCTCGTAAAATCCAACTAGTTAAACAACTGCACGATACCAAGGCACCAAACAGTATAACTTACAAAAGACTGCAACAGAATCTAAGACAAATCATACAACATTCAAACGCAACACCCATAAGACGTGTTAACGATTTAGATTATGTCTGTGCGTATTGCGAATACCAACACCCAAACCCGGCCAAgctaaaaaaacatacaatagaaACGCACAGTAAAGAAACGGTTGTCACATCGACGAAGAAAATGTCGGCGCACGACTTACTAGTCAAACTAGACATCACATCCCTGAGTTGCGGTCTTTGCGACGAAAATTTAGACACCTTGGAGCAGTTGCTCGAGCATTTGCAAAAGACGCACAACAAAAAGATCCACAACGATGTCCAAAATCAGATTCTACCTTTCAAATTCGGCGACGGCCCCCTTACCTGCTTTATTTGCGACGCTTCTTTCCCAACGTTCAAGATGTTAAACGTGCACGTCAACACGCACTACAGGCACTACGTATGCGACGTCTGTGGCTATGGTTTCGTCAATCCGAACAAACTGGGGAAGCACATGCTGACACATAAGACAGGTTCGTTCGTCTGCTCTCACTGCTTCAAGGACTTCGGCACGAATGTCAAGATGAAAGCTCACGTGAAGCAAGTACACGGGCCGAAGCTGCGACTAAAGTGCTGGCATTGCGACGAGAGATTCAGAGATATTCTCGTTAAGGAGAAACATATGACTGAAGCGCATGGCATAATGTTCCCTACTCCGAAATGCGACTCGTGCGAGAAGACGTTCATTCACCGCAGAGCATTGAATTCGCATATAAAGAGAGTCCACTTGATGGATCGTCGTCACGAATGCCCCGAGTGTGATATGAAGTTCTTCGCTGCAGCTGAGTTGAGGAATCATATGTTGAAGCATACGGGGGCTCGTCAGTTCCAATGCGATGTATGCCTCAAACGGTATTCGAGAAAGTGTAACCTTACTGAACACAAAAGGATACATGCAAATGATCGTCGCTTCAAATGCGAGCATTGCGGAATGACCTTCGTCCAGAAATGCAGTTGGCGGGGTCATATGCGGAACAAACATGGAGATATTGCTTAG
- Protein Sequence
- MEVIELLEEPLEVASKVDGKPTTVQARNSQTTTKQPRKPNKTQIQTNFIKSPSLSIEKIKIIPTKVHAPAVQGIKIEPLVKQYSMQEIDKHRYNIRTILQYSNATPIRTHYIESGYSCCFCKSHFLKAANLKTHTIHDHDDKTKNKFMQQNICLATFKVKLDITSLNCNVCSENTDTLEQLIYHLNIAHKKGIYTDIKNQIMCFKLDGVVMKCHICSQEYHNFKLLQEHMNKHILNFICDECGAGFINRNQLKSHSDVHKKGTHKCDACDKIFNTSIRLKSHIRQTHTATLLHKCHLCNERFKTKTSKINHMKAHGVVYADLKCDACNRTFKTNNTLRLHIKRDHLMERRYKCEVCDREFCTADMLKDHEITHTGQRDFKCHVCSKLYAKKWALIEHFRSHTGDRRFRCTYCEMTFLLKSSLIGIDFKVYELLEEPLVNIEDASKADHKSTTVVASKRQMNSKQSPKPDKTPIQRNLIKMPLCKDPSSEAFEILIARGVDIKNHKTFKTELEVSCGIIKDEDTTSVENVETTDTRKTQIKKKTYQNNSTDNFSAKLELVKHRFNIQILLQCSNATPIRTHYVGSGFICCFCKANFLEAADLKTHTLKDHDDETKHKFMQTTGLFSFTVKLDITTLSCKICRWPAETLEQLIHHLNSAHQKGLHTDIKSHIACFKFDGEGMKCHICAVEFNSFKHLQAHMNKHFSNYICDVCGAGFINRHQLGIHSDKHLIGSHKCGDCDKVFMSSKKLRAHERQSHIAFMEQYKCFHCGEKFKNRNTKKSHMIESHGVQYADLKCDACDRTFKSSKSMQRHKKRDHLMERYPCGLCDSVFCRPDRLKRHEIIHSGVREFKCELCSKSYTRRCKVPIKQEINEIKEEAVTADSRKIQLVKQLHDTKAPNSITYKRLQQNLRQIIQHSNATPIRRVNDLDYVCAYCEYQHPNPAKLKKHTIETHSKETVVTSTKKMSAHDLLVKLDITSLSCGLCDENLDTLEQLLEHLQKTHNKKIHNDVQNQILPFKFGDGPLTCFICDASFPTFKMLNVHVNTHYRHYVCDVCGYGFVNPNKLGKHMLTHKTGSFVCSHCFKDFGTNVKMKAHVKQVHGPKLRLKCWHCDERFRDILVKEKHMTEAHGIMFPTPKCDSCEKTFIHRRALNSHIKRVHLMDRRHECPECDMKFFAAAELRNHMLKHTGARQFQCDVCLKRYSRKCNLTEHKRIHANDRRFKCEHCGMTFVQKCSWRGHMRNKHGDIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -