Cpec018677.2
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596372.1:7418759-7422688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.9e-07 4.6e-05 24.0 2.5 1 23 223 245 223 245 0.99 2 13 1.6e-05 0.00091 20.0 0.9 1 23 251 273 251 273 0.97 3 13 4.8e-06 0.00027 21.6 1.4 1 23 279 301 279 301 0.97 4 13 1.4e-06 8e-05 23.3 2.0 1 23 306 329 306 329 0.96 5 13 0.0024 0.14 13.1 0.9 3 23 337 357 335 357 0.98 6 13 1.5e-06 8.4e-05 23.2 0.2 1 23 363 385 363 385 0.98 7 13 3.6e-06 0.00021 22.0 1.2 1 23 391 413 391 413 0.98 8 13 2.2e-05 0.0013 19.5 0.7 1 23 419 441 419 441 0.98 9 13 1e-05 0.00058 20.6 5.2 2 23 454 475 453 475 0.96 10 13 1.6e-06 9e-05 23.1 1.0 1 23 481 503 481 503 0.98 11 13 9.3e-07 5.4e-05 23.8 0.3 1 23 509 531 509 531 0.98 12 13 6.2e-06 0.00036 21.2 0.5 1 23 537 559 537 559 0.98 13 13 5.1e-06 0.0003 21.5 0.5 1 23 565 587 565 587 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAGATGTATGGTGAGTATCTACCCTCGGCCTCGACCGCTATGAGTCACGCACGGGTTCGGACTTTGGAAAAGGACAATATCAGAATGATATTGATAAATCCACAACTACAACCAATATTTGAATTTCTTGCAAATAATAAGCTCACTACGCAAGATGGTAGACCAGAAGAAGTCTGCTACATTTGTTACTCTCAGTTGCAGAGATGCTATAAGTTCATGCAGGTGTCTCGGAAAGCTGAGAATATTCTAACACAATTAGCTTATAAAGGCTTAGAGgTAACAGAACATGCCGTTAAAATACTAAATGGAGGCACTCGCCTGAATGTTATATCAGCGGTAGTAAAGCCTGTATCATTCTACAATTTCCCTCCAGAAGCAGTGTATAGCATATCAGGCAATGTGAAACAAGAGCAACATGTAGAACCAAACTACCCAATTGATTTTGAAAATGAATTTGCCCATGAAGATGTCAAAATAGATTTCATTGAATTTATTGAAGcACCTACTTCAAAAGacataaaagaagaaaatgCGGAGTTCCAAGAAAAAATTAACCGTGACTATTTACAACCAAGAGATGTTAAAAAAGAACTAGCAATATCAGACCCATCTTGTAGTGTTGAAACAGCTCAAtctaatatttgtaataaaggAATGCCATATCAATGCACTATTTGTACAAAGTCATACACTAATAGATATGTTTTAAAACGCCACATGAAAATTCATTCAGGAGACAAACCTCATATCTGCAGCGTTTGCAGCAAATCATTTCCTGAAAATAGTGATATGATAAAGCACATGAAGATTCACAGCAGTGAAAAGGCATTTGCCTGCAGCATGTGTGATAAAACGTTTTATGAAAACTATCAAttgaaaaatcatttaaaagtCCACGCAGGAGAAGAGTTTACTTGTGAAATTTGCGATCAGTCATTTCCCGATAATcatcatttaaaaatacatatgaatGAAATGCATGGAGGTGTAAAGCCATTTGGTTGTGAAATGTGCAGTAAAAGATTTGCTTGGAAGTCGAAACTGGATAGGCATGTGCGTACCCATACAGAGGAGAGACCATACGCTTGTGATATATGTGAAAAGACATTTGCTGAAAGTGGAAACCTGAAAACCCACAGAAGAGTCCATACAGGCGAAAAGCTATATTCATGTGAAATATGCCGTAAGCAATTTACAACTAACAACACTTTGAAAACTCACATGGCAATACATTCGGGCGAAAAGCTATTTCCTTGTGACAAATGTGATAAATCGTTTCCTGTTATAGAATACTTGAAACGTCATAGTAAAACTCACTCAGAAAACAGGAAGTCTGATGCCTCGTTCATATGTACCTGTGATCGGTGCGGTAAAACATTTGTTGATAAATGTGCCCTAAGGAAGCACATGAagattcacactggagaaaagttATTTGTTTGTGACATGTGCGATAAAAGATTTGCTGCAAAATCTAAATTGAAAAGGCATGTTAGAAGTCATACAGACGAAAAACCGTATCCATGTAATCTGTGTGATAAATCGTTTGCTGAAACTGGAAGCTTGAAGACTCATATGCGAGTACACACTGgcgaaaagccatattcctgtgACGCGTGCGGTAAAGGTTTCGCTCAGTCTAATTCATTGAAGAAGCACCTCACAACTCATACAGGAGAAAGGCAGTTTTCTTGTGTTGTCTGCTACAAAAGTTTTGcagttaaaaataacttaacagATCACATGAGAATTCACagtggagaaaagccatatCTAAAAATAGCTGGAAAATACACATGA
- Protein Sequence
- MSEMYGEYLPSASTAMSHARVRTLEKDNIRMILINPQLQPIFEFLANNKLTTQDGRPEEVCYICYSQLQRCYKFMQVSRKAENILTQLAYKGLEVTEHAVKILNGGTRLNVISAVVKPVSFYNFPPEAVYSISGNVKQEQHVEPNYPIDFENEFAHEDVKIDFIEFIEAPTSKDIKEENAEFQEKINRDYLQPRDVKKELAISDPSCSVETAQSNICNKGMPYQCTICTKSYTNRYVLKRHMKIHSGDKPHICSVCSKSFPENSDMIKHMKIHSSEKAFACSMCDKTFYENYQLKNHLKVHAGEEFTCEICDQSFPDNHHLKIHMNEMHGGVKPFGCEMCSKRFAWKSKLDRHVRTHTEERPYACDICEKTFAESGNLKTHRRVHTGEKLYSCEICRKQFTTNNTLKTHMAIHSGEKLFPCDKCDKSFPVIEYLKRHSKTHSENRKSDASFICTCDRCGKTFVDKCALRKHMKIHTGEKLFVCDMCDKRFAAKSKLKRHVRSHTDEKPYPCNLCDKSFAETGSLKTHMRVHTGEKPYSCDACGKGFAQSNSLKKHLTTHTGERQFSCVVCYKSFAVKNNLTDHMRIHSGEKPYLKIAGKYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -