Basic Information

Gene Symbol
SMARCC1
Assembly
GCA_951394395.1
Location
OX596368.1:5025860-5045594[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.9 8.6e+03 -2.6 0.0 25 43 608 627 607 628 0.86
2 2 4.2e-14 4.5e-11 43.1 0.1 3 44 2304 2345 2302 2347 0.95

Sequence Information

Coding Sequence
ATGACGAGTATGGAAGACTTACTGTTGTCTCAAGAGCAATTATCATCTGCGATTGAGCAACTTTATTCAAACTTTAAGAAAGACGGTTCGGATAGGAAATCTCCTGATTATATCAAGCGAAGGCTAGGCACACTAGATAGTTATTGGAATGAATATCAATCTAACCATATTAAGCTGTGTGGATTAGGTAGTAAGACTCACTCTTATTTTACAACGAGTCAATTCGAGCAAACAGGAGAAATATACACAAACATCCGAGGAGCAATTCAAAGCTATACGAAGCCTACGGAAGATATCAGACCTTCCACTCCTCTTATCAAACCTGCAACCCCCATGGCGATGCCGGGGACACCTACGCCCGAATTATCTTCTCGGGGTAGTAACAGCAAGACCGATGAGATGCTGCGAAAGCAAAGCAGTAATTTCAGAGCATTTGAGCATACGATTTCTAACATCAATTTAGATTCTATATCAGATAAATGGGAATTCGATCACTTGTTGCGTACCATTCAGTCTCGTTGGACTACGATTGACACTCTTCATTGGGAGCTGGATAGCGAATCATGCAATCAAAAAAGCCCAGAGTAcgaatcgcatttttttaaggCAGAGAAGAAGtataatgaaattattaaaGCTATCAATCAGAAACTGTGGTCAGTTTCGCACAGGGAAAACTCTACACCTAAAATAGAAATTCCTACGTTCCATGGACATTATCATCAATGGTCCAGTTTCAAAGATCTCTTCGCGGAAACCATTCATGCGAACCCGACTCTGTCCAGCGCTCAGAAAATGCAATTTTTGAAAACCAAAGTGAAGGGCGAAGCCGAAAGATTGATCCAACACCTGCCGATATCATCGGATAATTATCCTGTTAGCTGGGATCTACTGAATCATCGGTACAACAACAAACGGCTAATATTGAGTGAGCACTTTGATTTAATGCTCAACATCCCAGCGGTCCAGCAAGTATCACTTAATCATATCAAGAAAATCCACGATGTTACTCGCGAAAGTCTTAACGCTATCAAGAACCTAGGAGTAAACGTAGACTCGTGGGACTCTCTTATCATTCATCTCATGTGCCAAAAACTGGACACTGAGACCCTCAGCGAATATCTTACTTCAGTTAAAGAACCCAAGGAGCATGATAACGAGGCCGGGGCATCGACATCGACCAACGCGAACGTCAGCGCACCTAAACAAGGGCAAAAATCAACGGTTCGAAGTTCGCACGTGTCACTTCAACAAGAGATACCTGAAATTCTCTTAGCAACTGCGGTGATTAAAGTTGAATGTTCAAATGGTTCTTACATAAGCATGCGCGCACTTCTAGATCAGGGTTCACAAACCTCTCTTATCACCGAAAACGCAGCACAGCTACTCGGATTACCACGCCAAAGATGCCAGGGCGTGATTACTGGAATAGGTGTAAAGCAAGCAAACTGTAAAGGAGCTATCAATATCAaatgtcaatcaatcaatcgcAACTTTAATTTTCATACTGACGTACTTATCATGAAAAATCTTATTAATAATCTTCCAAGTCACTCTTTTACTAAGCCAAATTGGTCGTACCTGGATCATATCACTTTAGCCGATCCTGAATTTAACATCAGCCGTCCAGTAGACATTCTGTTCGGAGCCGATATTTATTCTTTGATTTTATTAGAAGGAGTTTGTAGAGGCGATAATAATCATTCCCCTGTTGCGCAAAACACGCGTTTAGGGTGGATTTTGAGTGGGTGCGCAAGGACATTACAATGTAACGTCGTTCTGAACAATTTGGACGATATCCAACGATTTTGGGAAATCGAAGACATTGCAGAAGAATCAAACTTATCATTAGAGGATCAAGAGTGCATACAGTACTATAAAAGCACCACCACTCGACGACAGGATGGTCGTTATGAAGTACGATTACCTTTAAAATCTgactttgaaaataatttaggttTATCAAAAAACAGAGCAGTTGCACAGTTCAAATCATTGGAACGAAAATTCATAAAGAATCAGAAGATGGAAGAAAGCTATAAATCATTTATGAGCGATTATCAAGCATTGGGCCACATGATTCCCGCTACAAGTAGCGCCAAACCCGACTTTTATCTCACTCATCATGGGATAGAGCGGCCAGAATCAACAACCACTAAGTTTAGAGTCGTATTCAACGGCTCGGCAAAAACATCGTCAGGCAACAGCTTGAATGACGTCATGAAGCGTGGACCCAACCTTCAGCAAGACCTTCAGTCTCTTATCATAAAGTGGCGCCAATATCAATACGCCTATACCGCTGACCTTGAAATGATGTTCCGAAATATTTGGGTAAATAGTTTAGatcaaaaacttcaaaaaatcaTCTGGCGAGAGACTGAGCATGAAATTATCAAAGATTGGGAGCTAACGACAGTAACCTACGGCACTAAAGCTGCTCCATTCTTAGCAATGATGACCCTTCGACAGTTGGCATCAGATGAAAgattaaattatcaaaatagcTCAGCAGTCGACGTCCTGGAGAGCTCGTTTTATATGGATGACCTGGTTCATGGAGCTCATCAGCTCGAAGCCGCAAAACAATTGCGTAAAGACCTTATCAGTCTACTGAAAACAGGTGGTTTCAACCTAAGAAAGTGGAAATCAAACATCCCTGAATTATCAGACACTATCATTGATAATAAAAAGCAAGAAAGTTTCAGTTTCAAGCAACCGGAAACATCCAAAACACTGGGGCTTAGCTGGAACCACGAGCAAGACATGTTTATGTTTAGCTCAAAAATGTTACCTACCACCGAACAGGAAACAAAGCGGTCACTTTTATCAGATATATCAAAGTTATTTGATCCGCTCGGCTGGCTAGCACCTTTATCAACTAAATTAAAGATCATTTTTCAAAACGTATGGTTGTCTGCGATCAACTGGGATGACCCACTGCCTGAAGATATTTTATCAGAATGGATAATTATCAAAAAcgatattaaaaacataaataaactgCAAGTACCAAGGTGGCTATCAACAAATGAACGTGATGTCATAGAGTTACACGGCTTTTGTGACGCGTCGACAAAAGCTTACGCTTgcgttatttattgtaaaatcaaACGAGGTAAACAAACTATTATCACATTATTGGTCGCTAAAACAAGGATAGTACCATGTGGAAAAAATATCACTCTCCCGCGTTTGGAACTAAGCGCCGCTCATCTTTTATCAAAGCTAGTCCTCAAAGTGCAACAGTGCTTGAGTAGCTACAAAATCAAAACATACGGATGGTCAGACTCTATGATTGTCTTAGGATGGCTAAGCGGAGATCCAACAAGGTGGAAAACATTTGTCGCAAACAGAGTGCGAGATATCACGAGTACAATGCCATCAGAATGTTGGCGTTACGTTAAATCAGAGGAAAACCCGGCTGACAGTGCCAGCCGTGGATTATCAGCTTCACTGCTGATAAAACATAATTTGTGGTGGCAGGGACCGTCCTGGCTACCAGACTTCGATGGACAAGGCAAGCAGCCAGAATTTATCACCGATCAAGAAGTGAAAAAAGTCCGTCAAGTCAACGTTGTCACCGATCAAAACAGTATCATACATCAATTAATTTCGAATAACAGCTCTATCAACAAAGTTATTCGAATAGTAGCATGGATATTCAGATTCACCGAGAAAAAGGACACCAAGCAGGCGTACCTTTCCTTATCAGAACTGAATAATTCCGAAAATGTAATCGTTAAACAGGTCCAGCAACATGATTTTTCAAAAGAAATTAAGAGCATAAAAGAGAGCAGTCAGGTTTACTCTAAAAGCAATATATCACAACTGAATCCGTTTCTAGATGAAAATGGAATCCTGCGTGTTGGAGGACGGCTAAGAAATGCAAACATACCACTTGACATGAAGCATCCAATCATATTATCAGGATCAAGTCGCTTGGCAGAGCTTTTAATTGATCAAGCCCACAAAGCCTCTTATCACGGCGGGGCTCGTCTTACATCAGCATTTTTAAGGCGAAAGTATTGGATCGTAGGAGGaaataaaattgtgaaaaagCAGCTACGTGGATGCGTCAAATGCAGACGCCATGACCCTATCAAGCATGAACAAATAATGGGTGACCTACCTGCCGCTAGAACAAAGCCTACAAGACCCTTTCATCACACCGGCGTCGATTTTACGGGATTCGTAGACGTCAAGTCAAGCAAGGGTCGCGGTATTAAATCAACTAAAGGATATATATCAGTATTCGTTTGCATGGTGACCAAGGCCGTGCATCTCGAATTAGTATCAGATTTATCCTCTTCAGCCTTTTTAGCCGCCCTACGTAGAATGGCGGCTCGGAGAGGAGCTCCTAGTCACATCTACAGTGACAATGGCACCAACTTCGTAGGCGCTAACAAGATTCTCAACAGAGAATACCTAGATCTCCAAGGAACATTAGACGATAACTTTTATACAGCGATTACTGACATGAAAATTAAATGGCACTTTAATGCACCAGGATGGCCTAGCGCTGGAGGTCTCTGGGAAGCTGCAGTGAAGAGCCTTAAATATCACTTAAAAAGAATCATCGGAGAACAGAAATTAACATTTGAAGAATATGCCACACTGCTAGCTCAGTTAGAAGCGTGTTTAAATGCAAGACCGCTATGTCCTTTAACTGAGGATCCGGAAGACCTGGAATATCTGACTCCCGCACACTTCTTAGCGAGCGGTCCCACTCTAACAATCATAGAATCCGAGCGAGACCAACGAACAAGATGGCAACTCactcaaaaaatatttggcGAGGTATGGAAAAAATGGCAATCAGAGTATTTATGCCAACTATCAGCCCGGAGTAAGTGGCGCCAACCCAAAGAAAACCTCCTAATCAATGACGTCGTGATCATTAACGACGCTAATTTGCCCCCAGGAAAGTGGGCCTTAGGCAAAATCATAGCATTGCATCCTGGCAAAGATGACTATGTACGTGTAGTCAGCCTGAAAACCAAGAATGGGGAAATAAAGAGACCAATTACTAAAATATCAAAGTTACCCGTGAACGAGAGCAAAGCAACCGAGCACAACTGTGCGCTGCAACAGAAGCAAGAACAAAACACAGCCTCGGCTACTAGAAATCGttcaaatataaaaagtttatacaattttacaattatgttattcatgtgtatttttatgATGGTAACGCCCGTATACAGCGAGTATCAAATATCAAGCCTTAATAACAGTCAAGGATTTTACTTTGATCGAATAAGCAACATTCGCCTAGAAAGAGATCAGTGGAATTTAGTCATATACTACGACATGGCTCCATATTGGCAAAGCACTGAACTACTTGAAAAATATATCAATCATTTAGACGGCATTTGCAACGATCGAACAAAGAAAAAGATAGCACAATGCGAAATAATACTACTTCAATTACATCACGGGCTCAATGAACTCGAGCACTACAACAGTATTTTGCTTGGTAAGCAGTTCACACGTAGTATGCGCACGCGACTACCGCGCGGTCTTATCAACGGTGTCGGGTTCCTAGCTAATAAACTGTTCGGCGTACTTGATCAGGAATTCGCAGAACAGTACGAGCGCGATATTGAAACTATCAGAGAAAATGAGAAACATCTATCTTTACTTTGGAAAAACCAGACTACAGTCGTCGAGggtgaatttaatttaattaagagAGTGGAAGGGTCCATAGATAAACAGCGAAAACTTTTCAATCAGCATCTGAATAATCTTGAGAAAACGCTAAACAGGCAATATGATGATCTACAAGGTGTATCCAACTCATGCGACTTCACCTTATCATCGGTTATCGCACAAGGTATACTGGTGAACTTGAAAAACATTCAAGAAACGATCATCGATTCTCTTACAAATATCTACGCTGGGAAATTCAACTTCCATCTCCTTACCCCTGAGCAGCTACGAGACGAGATGAATATTATCACTGGATTATTATCAAGAGACATGACATTGCCCTTAAATAATCTTCAATCAGACATATCAAAGATGTATCACCTTCTCACCGTAAAAGCAAGAGCTTCTagtaagtttatcatatttgaAATCAAAATTCCTTTAGTAAGCAGAGACTACTTTGAGCTATATAAACTTATACCTATCCCGCAGCAAATTGAGAACAAAATGGTTAGCTTAGTATCAGTATCAGATTACGTAGCAGTAAACATGCAAAAGGACTCTTATGTACCAATCACAGAGAGAGATGTACACAATTGTATAGAGTTGGATAAGGACTCTCACTTATGTCCTTTAAAACAAGCTATTCATCAAATGAGATCAGAAGATAATCTATGTGTCAAAAGCCAGCTTTCCAATCAATGTCAAACAACGACCTTAGCTTGCAAAGATGCATGGAAGCAATTACATAAGTTCGGAATAATAACAATAAGCGAAGAGTGCATTATCAAGAGTGACTCATTTACTATTTACGCTCACAAAACGCAATCAAATACGTTAAGAAGGGAAGCCGATGTTATCCAGATCGAGATTCCTCCtataaataatatcatcaaaCTATCAATACCTACATCTACTGTCGAAAACCAATCAGCAAACTCAGATCATCAGAAATATTTCGAGGAGATCGACAGACAGATAAAGCAACTGAAAGATAGCGCTTCAGACGGAGTGCTGTCTGAGCATGTATCATATCATGACGTCCATCATTATGTCGTCATATATCTGGTGTTATTTGCGGCTGTCGTCGGGATCGCGATCCTGGTGTGGCGCCGCCGGCGGGCGCGAGCCGCGCGGCCGGGAGCGTCCGCCGCGGCGCCGCCCTCTCCACCAGCGCCACCAGCGGGACCACACTTAGAGCTTCGAGCGTCCACCTACGAGCCTCCTACGTACCGCGGCGGATCCCGTGGTCGCGAGTGGACCGAGCAGGAGACACTGCTATTACTCGAAGCTCTGGAGCTACATCGCGACGACTGGAACCGCGTCGCGGCGCACGTCGGCACGCGGACGCACGACGAGTGCATCCTGCACTTCCTGCGGCTGCCTATTGAGGAGCCTTATCTCAACGACCCAGCCTCAGGTGGCGTGCTGGGTCCGCTCGCATACCAGCCCATTCCGTTCAGCAAGACGGGTAACCCGGTGATGAGCACGGTGGCGTTCCTCGCGTCCGTGGTGGACCCGCGCATCGCGTCCAAAGCCACGCGCGCGGCTATGGATGAATTCGCAGCTATaaagGACGAGGTGCCGGCCGCCATGATGGAGGCGCACGTGAAGGCGGCCGGCGCGCACGGAGCCGCCGCCGCGCTGCACGCCACCGGCATCGCCGGCACCGCGCCCGAGCCCGCCGGTGAAAAGAAAGAAGGCAGCGACGTGAAGAGTGAACCGATGGACGTGGAAGAAGGCGATATGAAAGTGAAGGATGAACCGAGCGAAGCGCCCGCCGTACCCGCGCCGCCGCCTGCCGACGACAAGGAACCTAAGGAGGAACGCTCTTCACCTGCACCTGCGGAAAGCGCGAGCGGCACAGTGGACGCGAAGCTGCAGTCGGCCGCGGCCGCCGCGCTGGCCGCCGCCGCCGTTAAGGCGAAGCATCTCGCCGGCGTCGAGGAGCGCAAGATCAAGTCCCTCGTCGCGCTGCTCGTCGAGACGCAGATGAAGAAACTGGAGATCAAGCTGCGACACTTTGAGGAACTAGAAGCTACGATGGAGCGGGAAAGAGAAGGTCTAGAGTACCAGCGCCAGCAGCTGATCCAGGAGCGGCAGCAGTTCCACCTGGAGCAGCTGAAGGCGGCCGAGTTCCGCGCCAGGCATCAAGCGCATCAGAGGATGCAAGCGGAGGGCGGGGCGGCGCCGCCCGCGGCCGAGCAGCCGCCGCCGGACGCCGCGCCCGTGGCGCCTCCTACGCACGCCTAA
Protein Sequence
MTSMEDLLLSQEQLSSAIEQLYSNFKKDGSDRKSPDYIKRRLGTLDSYWNEYQSNHIKLCGLGSKTHSYFTTSQFEQTGEIYTNIRGAIQSYTKPTEDIRPSTPLIKPATPMAMPGTPTPELSSRGSNSKTDEMLRKQSSNFRAFEHTISNINLDSISDKWEFDHLLRTIQSRWTTIDTLHWELDSESCNQKSPEYESHFFKAEKKYNEIIKAINQKLWSVSHRENSTPKIEIPTFHGHYHQWSSFKDLFAETIHANPTLSSAQKMQFLKTKVKGEAERLIQHLPISSDNYPVSWDLLNHRYNNKRLILSEHFDLMLNIPAVQQVSLNHIKKIHDVTRESLNAIKNLGVNVDSWDSLIIHLMCQKLDTETLSEYLTSVKEPKEHDNEAGASTSTNANVSAPKQGQKSTVRSSHVSLQQEIPEILLATAVIKVECSNGSYISMRALLDQGSQTSLITENAAQLLGLPRQRCQGVITGIGVKQANCKGAINIKCQSINRNFNFHTDVLIMKNLINNLPSHSFTKPNWSYLDHITLADPEFNISRPVDILFGADIYSLILLEGVCRGDNNHSPVAQNTRLGWILSGCARTLQCNVVLNNLDDIQRFWEIEDIAEESNLSLEDQECIQYYKSTTTRRQDGRYEVRLPLKSDFENNLGLSKNRAVAQFKSLERKFIKNQKMEESYKSFMSDYQALGHMIPATSSAKPDFYLTHHGIERPESTTTKFRVVFNGSAKTSSGNSLNDVMKRGPNLQQDLQSLIIKWRQYQYAYTADLEMMFRNIWVNSLDQKLQKIIWRETEHEIIKDWELTTVTYGTKAAPFLAMMTLRQLASDERLNYQNSSAVDVLESSFYMDDLVHGAHQLEAAKQLRKDLISLLKTGGFNLRKWKSNIPELSDTIIDNKKQESFSFKQPETSKTLGLSWNHEQDMFMFSSKMLPTTEQETKRSLLSDISKLFDPLGWLAPLSTKLKIIFQNVWLSAINWDDPLPEDILSEWIIIKNDIKNINKLQVPRWLSTNERDVIELHGFCDASTKAYACVIYCKIKRGKQTIITLLVAKTRIVPCGKNITLPRLELSAAHLLSKLVLKVQQCLSSYKIKTYGWSDSMIVLGWLSGDPTRWKTFVANRVRDITSTMPSECWRYVKSEENPADSASRGLSASLLIKHNLWWQGPSWLPDFDGQGKQPEFITDQEVKKVRQVNVVTDQNSIIHQLISNNSSINKVIRIVAWIFRFTEKKDTKQAYLSLSELNNSENVIVKQVQQHDFSKEIKSIKESSQVYSKSNISQLNPFLDENGILRVGGRLRNANIPLDMKHPIILSGSSRLAELLIDQAHKASYHGGARLTSAFLRRKYWIVGGNKIVKKQLRGCVKCRRHDPIKHEQIMGDLPAARTKPTRPFHHTGVDFTGFVDVKSSKGRGIKSTKGYISVFVCMVTKAVHLELVSDLSSSAFLAALRRMAARRGAPSHIYSDNGTNFVGANKILNREYLDLQGTLDDNFYTAITDMKIKWHFNAPGWPSAGGLWEAAVKSLKYHLKRIIGEQKLTFEEYATLLAQLEACLNARPLCPLTEDPEDLEYLTPAHFLASGPTLTIIESERDQRTRWQLTQKIFGEVWKKWQSEYLCQLSARSKWRQPKENLLINDVVIINDANLPPGKWALGKIIALHPGKDDYVRVVSLKTKNGEIKRPITKISKLPVNESKATEHNCALQQKQEQNTASATRNRSNIKSLYNFTIMLFMCIFMMVTPVYSEYQISSLNNSQGFYFDRISNIRLERDQWNLVIYYDMAPYWQSTELLEKYINHLDGICNDRTKKKIAQCEIILLQLHHGLNELEHYNSILLGKQFTRSMRTRLPRGLINGVGFLANKLFGVLDQEFAEQYERDIETIRENEKHLSLLWKNQTTVVEGEFNLIKRVEGSIDKQRKLFNQHLNNLEKTLNRQYDDLQGVSNSCDFTLSSVIAQGILVNLKNIQETIIDSLTNIYAGKFNFHLLTPEQLRDEMNIITGLLSRDMTLPLNNLQSDISKMYHLLTVKARASSKFIIFEIKIPLVSRDYFELYKLIPIPQQIENKMVSLVSVSDYVAVNMQKDSYVPITERDVHNCIELDKDSHLCPLKQAIHQMRSEDNLCVKSQLSNQCQTTTLACKDAWKQLHKFGIITISEECIIKSDSFTIYAHKTQSNTLRREADVIQIEIPPINNIIKLSIPTSTVENQSANSDHQKYFEEIDRQIKQLKDSASDGVLSEHVSYHDVHHYVVIYLVLFAAVVGIAILVWRRRRARAARPGASAAAPPSPPAPPAGPHLELRASTYEPPTYRGGSRGREWTEQETLLLLEALELHRDDWNRVAAHVGTRTHDECILHFLRLPIEEPYLNDPASGGVLGPLAYQPIPFSKTGNPVMSTVAFLASVVDPRIASKATRAAMDEFAAIKDEVPAAMMEAHVKAAGAHGAAAALHATGIAGTAPEPAGEKKEGSDVKSEPMDVEEGDMKVKDEPSEAPAVPAPPPADDKEPKEERSSPAPAESASGTVDAKLQSAAAAALAAAAVKAKHLAGVEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARHQAHQRMQAEGGAAPPAAEQPPPDAAPVAPPTHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-