Cpec020338.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colostygia pectinataria
Gene Symbol
-
Assembly
GCA_951394395.1
Location
OX596376.1:3491033-3493852[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6e-10 3.7e-07 30.1 0.1 1 44 16 59 16 60 0.91

Sequence Information

Coding Sequence
ATGGTACGCAATTATGTTCGAACAACAAATAGGGCAGCCACTTACACAAGAGAACAATTGCTAGAAGCTGTAGATAAAGTAAAGAACGGCGAGTTGACAGCTTATAGAGCCGCTATAGCATATAAAATTCCTCGTCCAACGATCGTAGCCCGGGTGTATGAAAAATATGGTTTGAAATCAAAGTCTTTAGGGAGAAATACAGCTATTCCTGAAGAGACAGAAAACAAATTGGCAGAGAATTTACATGAAATGGAAAAATATGGCTTTGGCTTGACTAGAACAGAAATAATGGAAGTTGTTGGAGACTATgtgactaaaaataatatagaaactCCCTTCAAAAACGGTATACCGGGAGAAGATTGGTTTTTAGCGTTCAAGAAACGCCACAATTTGACCGTTAAAAAGCCACAAGCAGTGGAAAACTCACGCAAAAAAGCATGCAATCCCTGGGTGATATACTCATATTATGAGTTACTAAAGAATACTATGGACGAGCTGGGATTGCATGACAAACCCTCACATATATGGAATTTAGACGAAACAAGTTTTAGCAAAGACCCCAGTAAAACCAAAGTGGTAGGCTTGAGAGGTTATGCCTCAACAAGAACTATCGCATCACCCGGTAAAGATAACACAACAGTTTTGCTGGGGTGCAGTGCAGCTGGCGGTAAAACCCCTCCGCTTATCATATTTAAAGCGAAAAATCTCTGGGATGAGTGGACTTCCGAAGAGGACTATCCAGGCACTGTTTACGCAGCAACAAAAAATGGTTGGATGGAGACAAATGTATTTGAGACATACTTTGAAAAGGTGTTTCTGCCCACCGTGGGTCAAAAACGGccaatattattagtgtacgaCGGTCATTCTACTCACGTGGGAATCAACATAATTGAAAAAGCTCGTGCAGCCGGAATTACAATCATGAAAATTCCTCCACATACTAGTGACAATCTACAGCCCTTGGATCTAGCGGTCAACAAATCCTTTAAAGACAAATGGGATCTCATGCTAGTAAAATGGCAAAGATTACACGTGGGTCAGGCATTGCCCAaaaaagaattttcgaaattgaTTGGTGTCGTTTGGGCCCAAGTTGATCCCAAAGTATGTGAAGCAGGATTCCGAAAAGCTGGAATTTTTCCTTTCAATAGTAATGCTGTACCTGAAGAAAAATTTAACCCACACCAACTGGCAGAATGGAAAAAACAACAAGAACAGTCTATTGGATTAAATGAGATAACCACTACATCTGACGACGTTTTGAAAAGTTTAGATCGTGGCTCATCTGATGAGGCATTTTCTTCGTGCTCCAAAAATCAAATTACTGGTCTACGACAAACTGAAATTCAGTCTGGAAATAATGTGTTATACACAAACGATCCTTATCCAATCTCGATCCCTTCATTACAATCCATTTGTCTCAATTATTGGAATTATGCCATAGAACGTACCACAGATCACAAATCAGTAAGCGATGACAGGCGCATAAGCCCATCTTGTAAAATTGCATTGCCTCAGTCATTTATTTGTGATATGAGAAGTTTTAAAAAGGTGGGTCCTGACCATAATGTATCAAAAAATGTTGCTAAAACATCGCTAATGTTATCAAAAGTGACTGTAATAGAGGATCGTCATTTTACATTTGAGGAATTATTACTACAAAAAATTAATGCAGGAGGGCACAGTAAACAAAAACGTACTAAAATTGCTGGTGGTGCCGAAGTCATAACAAGTGAAGACGTTTATAAGAAACAGAAGAATATCGAAGAAGAAAAATCAAAGAAACTGAAATTAAGAGAAGAAAAATTGGCTAATAAGCGCAAAAATGATGAAAATACAACAACAGGACTCTACAAAGAcagcaaaaaaactaaaacaggaGATTCTACGAGTGAAAGTaagattaaaaaacaattattaatagACGAAGACAGCAAAGATCATGATGACAATGGGAAATTGCGAGAAGAAAAATTGGTGAACAAGCGAAAAAAAGATGCTAATATGAAAACGAGACTTTGTAAAGACAAGAAAAGAACAAATACAGGAGATTCTACAAAAGAGCGTAAGATAAATAATCAATTAAGAGATGAAGACAGTAAACATTATGATGGCAAAACGAAACTTAGACAGTTCAAAAGGTTTGAAAATAGTCACAGAAAAAAGggtatgaaacaaaaaaagataaagaaattaaaaacagcAGATGACTCCACAAGTGAAAGTGACTTTGAAATGACATTAATGGATGATAGTGATATTGAAGGTTGTGAAACATGGATAACAGAAGATTCTACAAGTGAAAGTGAGGTAAACAAAGGATCTCAAAGGATATCAAAGGATGACACTTATATTAAAGACATACCAAATTATGAAGATGAAATAGTCCAGAATACAGAAATAGATTCAATAGAAAATAGTGATATATATGACAGTATTCACAACACAAACAAGGAAAATTATAACGACGAACTCGTAGAAAATGATTACGATGAACCACCTACAAGTACCGTCGACAAAGGACAGTGGGTCTTAGTAAAATTTTCTACTAAAACAAGCATAAAACATTATGTTGGAGTTGTTACAGATGTAAACTCTGATAGCATACCAACTATAAAGTTTGCTcggaaaagtttttttaaaagcagCCGCGGCGGAGATGATTCTAGAAACACTTTTGTTTTTCCACACGTCCCTGACATATGCGATGTTACACATCTTGAAGATATAGTATGCAAACTACCCGAGCCGATGATAGATCGTAGAGGaaaattatcatttaaaatatcCTTTCAAAGCTTTAATGTTCAGTAG
Protein Sequence
MVRNYVRTTNRAATYTREQLLEAVDKVKNGELTAYRAAIAYKIPRPTIVARVYEKYGLKSKSLGRNTAIPEETENKLAENLHEMEKYGFGLTRTEIMEVVGDYVTKNNIETPFKNGIPGEDWFLAFKKRHNLTVKKPQAVENSRKKACNPWVIYSYYELLKNTMDELGLHDKPSHIWNLDETSFSKDPSKTKVVGLRGYASTRTIASPGKDNTTVLLGCSAAGGKTPPLIIFKAKNLWDEWTSEEDYPGTVYAATKNGWMETNVFETYFEKVFLPTVGQKRPILLVYDGHSTHVGINIIEKARAAGITIMKIPPHTSDNLQPLDLAVNKSFKDKWDLMLVKWQRLHVGQALPKKEFSKLIGVVWAQVDPKVCEAGFRKAGIFPFNSNAVPEEKFNPHQLAEWKKQQEQSIGLNEITTTSDDVLKSLDRGSSDEAFSSCSKNQITGLRQTEIQSGNNVLYTNDPYPISIPSLQSICLNYWNYAIERTTDHKSVSDDRRISPSCKIALPQSFICDMRSFKKVGPDHNVSKNVAKTSLMLSKVTVIEDRHFTFEELLLQKINAGGHSKQKRTKIAGGAEVITSEDVYKKQKNIEEEKSKKLKLREEKLANKRKNDENTTTGLYKDSKKTKTGDSTSESKIKKQLLIDEDSKDHDDNGKLREEKLVNKRKKDANMKTRLCKDKKRTNTGDSTKERKINNQLRDEDSKHYDGKTKLRQFKRFENSHRKKGMKQKKIKKLKTADDSTSESDFEMTLMDDSDIEGCETWITEDSTSESEVNKGSQRISKDDTYIKDIPNYEDEIVQNTEIDSIENSDIYDSIHNTNKENYNDELVENDYDEPPTSTVDKGQWVLVKFSTKTSIKHYVGVVTDVNSDSIPTIKFARKSFFKSSRGGDDSRNTFVFPHVPDICDVTHLEDIVCKLPEPMIDRRGKLSFKISFQSFNVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00704915;
90% Identity
iTF_00702829;
80% Identity
-