Basic Information

Insect: Colostygia pectinataria
Gene Symbol: -
Assembly: GCA_951394395.1
Location: OX596371.1:5064787-5067613[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.8e-10 3.6e-07 30.2 0.1 1 44 16 59 16 60 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.8e-10	3.6e-07	30.2	0.1	1	44	16	59	16	60	0.91

Sequence Information

Coding Sequence: ATGGTACGCAATTATGTTCGAACAACAAATAGGGCAGCCACTTACACAAGAGAACAATTGCTAGAAGCTGTAGATAAAGTAAAGAACGGCGAGTTGACAGCTTATAGAGCCGCTATAGCATATAAAATTCCTCGTCCAACGATCGTAGCCCGGGTGTATGAAAAATATGGTTTGAAATCAAAGTCTTTAGGGAGCTATTACAATACAGCTATTCCTGAAGAGACAGAAAACAAATTGGCAGAGAATTTACATGAAATGGAAAAATATGGCTTTGGCTTGACTAGAACAGAAATAATGGAAGTTGTTGGAGACTATgtgactaaaaataatatagaaactCCCTTCAAAAACGGTATACCGGGAGAAGATTGGTTTTTAGCGTTCAAGAAACGCCACAATTTGACCGTTAAAAAGCCACAAGCAGTGGAAAACACGCAAAAAAGCATGCAATCCCTGGACGAAACAAGTTTTAGCAAAGACCCCAGTAAAACCAAAGTGGTAGGCTTGAGAGGTTATGCCTCAACAAGAACTATCGCATCACCCGGTAAAGATAACACAACAGTTTTGCTGGGGTGCAGTGCAGCTGGCGGTAAAACCCCTCCGCTTATCATATTTAAAGCGAAAAATCTCTGGGATGAGTGGACTTCCGAAGAGGACTATCCAGGCACTGTTTACGCAGCAACAAAAAATGGTTGGATGGAGACAAATGTATTTGAGACATACTTTGAAAAGGTGTTTCTGCCCACCGTGGGTCAAAAACGGccaatattattagtgtacgaCGGTCATTCTACTCACGTGGGAATCAACATAATTGAAAAAGCTCGTGCAGCCGGAATTACAATCATGAAAATTCCTCCACATACTAGTGACAATCTACAGCCCTTGGATCTAGCGGTCAACAAATCCTTTAAAGACAAATGGGATCTCATGCTAGTAAAATGGCAAAGATTACACGTGGGTCAGGCATTGCCCAaaaaagaattttcgaaattgaTTGGTGTCGTTTGGGCCCAAGTTGATCCCAAAGTATGTGAAGCAGGATTCCGAAAAGCTGGAATTTTTCCTTTCAATAGTAATGCTGTACCTGAAGAAAAATTTAACCCACACCAACTGGCAGAATGGAAAAAACAACAAGAACAGTCTATTGGATTAAATGAGATAACCACTACATCTGACGACGACGTTTTGAAAAGTTTAGATCGTGGCTCATCTGATGAGGCATTTTCTTCGTGCTCCAAAAATCAAATTACTGGTCTACGACAAACTGAAATTCAGTCCGGAAATAATGTGTTATACACAAACGATCCTTATCCAATCTCGATCCCTTCATTACAATCCATTTGTCTCAATTATTGGAATTATGCCATAGAACGTACCACAGATCACAAATCAGTAAGCGATGACAGGCGCATAAGCCCATCTTGTAAAATTGCATTGCCTCAGTCATTTATTTGTGATATTAGAAGTTTTAAAAAGGTGGGTCCTGACCATAATGTATCAAAAAATGTTGCTAAAACATCGCTAATGTTATCAAAAGTGACTGTAATAGAGGATCGTCATTTTACATTTGAGGAATTATTACTACAAAAAATTAATGCAGGAGGGCACAGTAAACAAAAACGTACTAAAATTGCTGGTGGTGCCGAAGTCATAACAAGTGAAGACGTTTATAAGAAACAGAAGAATATCGAAGAAGAAAAATCAAAGAAACTGAAATTAAGAGAAGAAAAATTGGCTAATAAGCGCAAAAATGATGAAAATACAACAACAGGACTCTACAAAGAcagcaaaaaaactaaaacaggaGATTCTACGAGTGAAAGTaagattaaaaaacaattattaatagACGAAGACAGCAAAGATCATGATGACAATGGGAAATTGCGAGAAGAAAAATTGGTGAACAAGCGAAAAAAAGATGCTAATATGAAAACGAGACTTTGTAAAGACAAGAAAAGAACAAATACAGGAGATTCTACAAAAGAGCGTAAGATAAATAATCAATTAAGAGATGAAGACAGTAAACATTATGATGGCAAAACGAAACTTAGACAGTTCAAAAGGTTTGAAAATAGTCACAGAAAAAAGggtatgaaacaaaaaaagataaagaaattaaaaacagcAGATGACTCCACAAGTGAAAGTGACTTTGAAATGACATTAATGGATGATAGTGATATTGAAGGTTGTGAAACATGGATAACAGAAGATTCTACAAGTGAAAGTGAGGTAAACAAAGGATCTCAAAGGATATCAAAGGATGACACTTATATTAAAGACATACCAAATTATGAAGATGAAATAGTCCAGAATACAGAAATAGATTCAATAGAAAATAGTGATATATATGACAGTATTCACAACACAAACAAGGAAAATTATAACGACGAACTCGTAGAAAATGATTACGATGAACCACCTACAAGTACCGTCGACAAAGGACAGTGGGTCTTAGTAAAATTTTCTACTAAAACAAGCATAAAACATTATGTTGGAGTTGTTACAGATGTAAACTCTGATAGCATACCAACTATAAAGTTTGCTcggaaaagtttttttaaaagcagCCGCGGCGGAGATGATTCTAGAAACACTTTTGTTTTTCCACACGTCCCTGACATATGCGATGTTACACATCTTGAAGATATAGTATGCAAACTACCCGAGCCGATGATAGATCGTAGAGGaaaattatcatttaaaatTTCCTTTCAAAGCTTTAATGTTCAGTAG
Protein Sequence: MVRNYVRTTNRAATYTREQLLEAVDKVKNGELTAYRAAIAYKIPRPTIVARVYEKYGLKSKSLGSYYNTAIPEETENKLAENLHEMEKYGFGLTRTEIMEVVGDYVTKNNIETPFKNGIPGEDWFLAFKKRHNLTVKKPQAVENTQKSMQSLDETSFSKDPSKTKVVGLRGYASTRTIASPGKDNTTVLLGCSAAGGKTPPLIIFKAKNLWDEWTSEEDYPGTVYAATKNGWMETNVFETYFEKVFLPTVGQKRPILLVYDGHSTHVGINIIEKARAAGITIMKIPPHTSDNLQPLDLAVNKSFKDKWDLMLVKWQRLHVGQALPKKEFSKLIGVVWAQVDPKVCEAGFRKAGIFPFNSNAVPEEKFNPHQLAEWKKQQEQSIGLNEITTTSDDDVLKSLDRGSSDEAFSSCSKNQITGLRQTEIQSGNNVLYTNDPYPISIPSLQSICLNYWNYAIERTTDHKSVSDDRRISPSCKIALPQSFICDIRSFKKVGPDHNVSKNVAKTSLMLSKVTVIEDRHFTFEELLLQKINAGGHSKQKRTKIAGGAEVITSEDVYKKQKNIEEEKSKKLKLREEKLANKRKNDENTTTGLYKDSKKTKTGDSTSESKIKKQLLIDEDSKDHDDNGKLREEKLVNKRKKDANMKTRLCKDKKRTNTGDSTKERKINNQLRDEDSKHYDGKTKLRQFKRFENSHRKKGMKQKKIKKLKTADDSTSESDFEMTLMDDSDIEGCETWITEDSTSESEVNKGSQRISKDDTYIKDIPNYEDEIVQNTEIDSIENSDIYDSIHNTNKENYNDELVENDYDEPPTSTVDKGQWVLVKFSTKTSIKHYVGVVTDVNSDSIPTIKFARKSFFKSSRGGDDSRNTFVFPHVPDICDVTHLEDIVCKLPEPMIDRRGKLSFKISFQSFNVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00704915;
90% Identity: iTF_00702829;
80% Identity: -