Cpec019904.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596375.1:6201987-6202823[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-10 7.3e-08 32.4 0.0 4 37 17 50 14 54 0.89
Sequence Information
- Coding Sequence
- ATGGTCCGGCATTATATTAGGAAAAAAGAAAAAGCATACACAGACTTAGATCTTCAGAAAGCTATTGATGATGTGAAAAATAACGGAATGAGCAGCAGCCAAGCGGCACTGGTTTATGGAATACCAAGAACTACAATCAACACTAGGCTTCAATGTGTGCATGATACAGTTGGCAGACCAACTGTGTTTTCTGCTGACTTCGAAAAACGAATGGCGGAGAATCTTCATATCATGGAAAAACATGGTTTTCCGTTAAGTAGAAAGGAAGCATCGGTTTTGATTTCGGAATACGTTCGCCGAAATGGAATGACAACACCCTTTAAAGATGATATTCCTGGCAAggattggttttatttattccaaaaacgAAATGGTTTGTCTATTAAAAAACCACAACACGTTGAAATAGCACGGCGAAAAGCTTGCGATCCTTTTGTAATATATGAATACTTCGACTTGCTAGAAAAGGTGGTCGAAGAGTTAAATCTCAAAGACAAACCTCAACAAATATACAATCTTGACGAAACGTCCATATGCAACGATCCTGTTAAGGGAAAAATCATCGGAAAGAAAGGTTTTCCGGCTACTAGAACCACAAGCGGTCCTGGCCGGCACAACACTACTGTCCTTTTAGCGACCAACGCCTGTGGTGTTAAAATACCGCCGCTAATTGTTCTACAAGGCAAAACTCTGTGCTCGCAGTGgttttatgaaaatgaaaatgtaaaaactGCATACGTGGTCAGTGAAAGTGAAGAGATCGCATCGAGCACAGCCCAAGAAAAACCACTAAAAGACTTTATTATTACTCTTAAATTCAAATGTTACCTACTATAA
- Protein Sequence
- MVRHYIRKKEKAYTDLDLQKAIDDVKNNGMSSSQAALVYGIPRTTINTRLQCVHDTVGRPTVFSADFEKRMAENLHIMEKHGFPLSRKEASVLISEYVRRNGMTTPFKDDIPGKDWFYLFQKRNGLSIKKPQHVEIARRKACDPFVIYEYFDLLEKVVEELNLKDKPQQIYNLDETSICNDPVKGKIIGKKGFPATRTTSGPGRHNTTVLLATNACGVKIPPLIVLQGKTLCSQWFYENENVKTAYVVSESEEIASSTAQEKPLKDFIITLKFKCYLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00935619; iTF_00361548; iTF_00361549; iTF_00361550; iTF_00382506;
- 90% Identity
- iTF_00935619; iTF_00361548; iTF_00361549; iTF_00361550;
- 80% Identity
- -