Cgig002521.1
Basic Information
- Insect
- Colletes gigas
- Gene Symbol
- nfxl1
- Assembly
- GCA_013123115.1
- Location
- WUUM01000009.1:6399267-6402195[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1 8.3e+03 -3.2 1.1 15 19 126 130 125 130 0.81 2 19 0.34 2.7e+03 -1.7 0.2 4 10 161 167 161 167 0.93 3 19 5.6e-08 0.00044 20.0 15.1 1 18 175 191 175 192 0.98 4 19 6.3e-08 0.0005 19.9 15.1 1 19 229 246 229 246 0.95 5 19 1.5 1.2e+04 -3.7 1.7 6 10 271 275 271 275 0.93 6 19 5e-05 0.39 10.6 10.8 1 19 281 300 281 300 0.92 7 19 0.0013 9.9 6.1 7.1 1 18 336 353 336 354 0.96 8 19 0.0049 38 4.2 7.3 1 12 388 399 388 399 0.94 9 19 1.2 9.5e+03 -3.4 1.7 6 10 409 413 409 413 0.97 10 19 1.1e-07 0.00088 19.1 13.4 1 18 419 436 419 437 0.91 11 19 1.7 1.3e+04 -3.9 1.3 6 10 466 470 465 470 0.76 12 19 0.0001 0.82 9.6 9.8 9 19 485 495 483 495 0.90 13 19 0.0025 20 5.2 6.2 1 12 505 515 505 515 0.95 14 19 0.85 6.7e+03 -2.9 5.8 14 18 547 551 547 552 0.89 15 19 2.9e-05 0.23 11.4 5.5 1 12 588 599 588 599 0.97 16 19 0.59 4.6e+03 -2.4 1.9 6 10 615 619 614 619 0.88 17 19 0.0049 39 4.2 16.3 4 19 629 644 627 644 0.91 18 19 2 1.6e+04 -6.1 2.9 9 13 650 654 650 654 0.74 19 19 1.2e-05 0.097 12.5 12.1 1 16 689 703 689 709 0.88
Sequence Information
- Coding Sequence
- ATGCAGAAATTTAGACGAGCTcaagtacaaaataaaatagctATTAAGAAACATTTGGAAGCTAATGTTTATTTAGAATCATCAAGCGAGGATGAAAACGACACAAACGAAGAGAATATAGAAGATGTAATTGGCAAAGTGTTATCTGCCTACCAAGGAAGAGGAGAGGATGCAGAAAAgattttatcatatttaataaatatttttcaatctggTAGTGCTGTTTGCTTAATATGTATTTCGACTGTAAAGAGAGCAGACGCGATCTGGAATTGCAACAAGTGTTTtgcttttttacatttatcttGCATTCTACATTGGATACAAGATAGTTTGAGCGTTAAACGTAAAAAAGGTATTACACCAGTCTGGGCATGCCCAAAATGTCGCATGGAATACGAGCATGATGAAATTCCTCGTGCCTacaaatgtttctgtaaaaagGTCATAGACCCTGCATTTCAACCATGGAATATTCCACATTCTTGCGGAGATATCTGTGGCAAGCCCTTGAAACCAGAATGTGGTCACAAATGTGTTTTGCTTTGCCATCCTGGCCCGTGTCCACCGTGCGCGAAAACGGTGtcgtttaaatgtttttgtGGCAAACAATCGCCTCAGCTGCGACGATGTAACGCCAAGGAATGGAGTTGTAACACCttgtgcaataaaaaatatgagtCTTGTTCGCATAATTGCAAGGAAGTGTGTCATGCAGGGAAGTGTCCCCCTTGTCCGGAAACATTATTGCTCGAGTGTCATTGTAAGAGCAACACGGATATAAGACAATGTTCCGAGGGTGCGTGGATTTGCGAGAAACCATGTCGCAGACCTTTATCTTGCAACGTTCACGTTTGCCAGAGCACATGTCATTTACCCGGTGACTGCGAGGCTTGTCCTTTGGAAAAGAACAGAACGTGTCCTTGCGGGAAAAAGCGTTACGTTGTTTCCTGCAGACAGGAAAAGTTACCCACGTGCGGGGACACGTGTGGTAAATTGTTGGATTGCAGTTCGCACTTTTGTAACATGAGGTGTCACACAGATCGGTGTGGACAATGCTTGGAGGTGGTCACAAAATCGTGTCGATGTGGCAGTTATCAAAAGGAGATTGCTTGCGGTaaagaatttcattgcaatAAGAAATGTACCCAAGTACGTCTCTGTGGGAGACACTTGTGCAACAGAAAATGTTGCGACTGTTTGGCCAAAAACACGTCCAACGTATGTGAAAAGGTATGCGAGAACACTTTAAATTGTCGTAAACATAAATGTTCTGCTCCCTGCCACAGTGGTCCATGTTATCCGTGCGAACGTACCGACGTTATTCAGTGCAAATGCGGATACAACAAAATTACGGTACCGTGTGGcgttacgaaaaaaataaaacccCCACCGTGCAATAAGCCGTGTAAAATACCGCCGATTTGTCATCATCTGAAAAGAGAAACGCATAAGTGTCATCAAGGTCCGTGTCCACCTTGTAAAAAGGTTTGCGATTTGGTGTACAAACGGTGCGGCCATTCTTGCGTTGCTGTTTGTCATACGAAAGTGTGGGTACAGGTGAACAAGAACGACATGAAAGCTCGACCCACGGGACCATGGGATATACAGAAAGAGATCATGCAGCTGAAGACACTGCCTTGTCCACCATGCGAAGTATCAGTACCGGTTACATGTTTGGGAGGCCATGAGACGCGCCCGTGGCCTTGTCACATGGCCAAACCCACCTCTTGTGGAAGACTCTGCGGAAGAACGTTACCTTGTTCAAATCATACTTGTGAATTAATTTGCCACAAAGTACCGTCCGCCATGGATGATAAGGATAATACTGCGTGCATGGAATGCGAACAGCCATGTGTATTTTCTCGGCCGCAAGGCTGTACACATTTGTGTCCAAAACCATGTCATCCCGCGCCATGTAATCCTTGCAAACaattagttaaaattttatgtcaTTGTGGCATAAGCACGCTGTATCGAAGATGCGTCCAACTAACATCGGCAACGATAGAGCAACGTGACGAATTGCTCAAATGTGGAAATCAGTGCCctaaaaatTACCCTTGTGGACATCGATGCATCGCCGACTGTCACCCTGGTCCGTGCAAGAACGGAAACGAGTGCAACAAGAAAGTGAAATTATTCTGTTCGTGCAAACGTATAAAGAGAGACATAATCTGCTCGACGGTACAGAAGCAGCAAATTCATATACAATGCGACGACATTTGTAAAAAGTTAAAGAACGAGAGAAGCCAAGCAGAGGCTGTTTTACTGGAGCAAAAACGTCAGGCCGAAGAAATACGCAATCAGGAGGAAATCGAAAAGTTCGAACGGAAATTCAAACCACGTCGCAAGGGAAAGGACAAGTTCGATAAGAAACAGTTACAGAGAGAAACAAGTAACAACTATTGGAAATATTggattttaacaattttaatctgTATAATAGCTATAGGAATATTTTATGCGTGTGTACAAGAGtcgtga
- Protein Sequence
- MQKFRRAQVQNKIAIKKHLEANVYLESSSEDENDTNEENIEDVIGKVLSAYQGRGEDAEKILSYLINIFQSGSAVCLICISTVKRADAIWNCNKCFAFLHLSCILHWIQDSLSVKRKKGITPVWACPKCRMEYEHDEIPRAYKCFCKKVIDPAFQPWNIPHSCGDICGKPLKPECGHKCVLLCHPGPCPPCAKTVSFKCFCGKQSPQLRRCNAKEWSCNTLCNKKYESCSHNCKEVCHAGKCPPCPETLLLECHCKSNTDIRQCSEGAWICEKPCRRPLSCNVHVCQSTCHLPGDCEACPLEKNRTCPCGKKRYVVSCRQEKLPTCGDTCGKLLDCSSHFCNMRCHTDRCGQCLEVVTKSCRCGSYQKEIACGKEFHCNKKCTQVRLCGRHLCNRKCCDCLAKNTSNVCEKVCENTLNCRKHKCSAPCHSGPCYPCERTDVIQCKCGYNKITVPCGVTKKIKPPPCNKPCKIPPICHHLKRETHKCHQGPCPPCKKVCDLVYKRCGHSCVAVCHTKVWVQVNKNDMKARPTGPWDIQKEIMQLKTLPCPPCEVSVPVTCLGGHETRPWPCHMAKPTSCGRLCGRTLPCSNHTCELICHKVPSAMDDKDNTACMECEQPCVFSRPQGCTHLCPKPCHPAPCNPCKQLVKILCHCGISTLYRRCVQLTSATIEQRDELLKCGNQCPKNYPCGHRCIADCHPGPCKNGNECNKKVKLFCSCKRIKRDIICSTVQKQQIHIQCDDICKKLKNERSQAEAVLLEQKRQAEEIRNQEEIEKFERKFKPRRKGKDKFDKKQLQRETSNNYWKYWILTILICIIAIGIFYACVQES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00865697;
- 90% Identity
- iTF_00360598;
- 80% Identity
- -