Cgig005266.1
Basic Information
- Insect
- Colletes gigas
- Gene Symbol
- -
- Assembly
- GCA_013123115.1
- Location
- WUUM01000006.1:137942-142245[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.071 5.2 7.6 0.4 6 23 252 269 249 269 0.92 2 13 0.02 1.5 9.3 1.1 1 23 274 297 274 297 0.96 3 13 0.00013 0.0097 16.1 0.4 3 23 311 332 310 332 0.96 4 13 0.02 1.4 9.3 0.5 3 23 345 365 345 365 0.98 5 13 8.4e-08 6.1e-06 26.2 1.5 2 23 410 431 409 431 0.97 6 13 0.0042 0.3 11.4 0.5 1 23 436 459 436 459 0.93 7 13 0.88 64 4.1 1.6 2 23 532 553 532 553 0.96 8 13 1.2e-05 0.00088 19.4 4.4 1 23 562 584 562 584 0.98 9 13 1.5e-06 0.00011 22.3 2.4 1 23 593 615 593 615 0.98 10 13 0.17 12 6.4 4.4 1 22 621 642 621 642 0.94 11 13 0.001 0.074 13.4 2.0 1 23 669 691 669 691 0.99 12 13 0.15 11 6.5 0.0 1 23 754 777 754 777 0.97 13 13 6e-07 4.4e-05 23.5 5.9 1 23 782 805 782 805 0.98
Sequence Information
- Coding Sequence
- ATGGCTGTGCCCAACAAGTGGGAGAACGCTTGCAGATTATGCTCggaggaaaaaaatgaaatgctgtcaattttcggtaatgagGGAGTGCAGCGTAAAGTGGCGCAAAAGTTACGTGCCTGTCTACCCGTCTTAGTATATAAAACCGATCCACTGCCAAAGCAAATATGTCAGTTCTGTGCCGCGAGGCTGGACGACGTTTATGAGTTTAGAGAATATTGTCTGAGTGTTTATAAAAGCATGCACTTAAAGTTATTATCGTATAAGAATATCGAGtctgttcaaatttatttagacgCAATGAAAAACTCGCCCGATCCTTGTCAGgCGCAATTGTGGAGGGAGAAAGCAAGAGCACCGCCACCTTTAGTACCTTTGCCAGCCTCGCTGCCAGTCGATTGTCCATCTGCGCCAACAGATATTAGTCAGGAACATCCAAATGCTTGTATCGAATCTTTACCCGAAGTACCTTGCGAAGTGGAGATCAAGGAAATGAATACAGAATCGATATTAGAAACCgatgttaatatttacaatgacAAAGGCAAGCTGTACAAGACGGACGCGATAGTGGAAGATACTACGAATTCGTTGAAAGAAGAGAATAACGATTCGCAACAAGAAGTAGAGGTAAAGAGGGAAGAAAAGCGAACAAGTATATTAGAACAGGTACTAATGGGTAGAGTAACAATCAATGATAGAAATGATTTAAATTCAAAGGAAAAGCTATCTTCTAAATGGTGGTGTGCTCCTTGCAATAGTTACTACAAAACGAAAGAGAGTTTAGTGAAGCATATGCAATTACATTGTCCAAGAAAATACACGTGTAGAAAATGTTCTATGTGTTTCGAGTTGGTAGAAGATTTAGCTAAACACGAAGCTACCAGTCATTTGAAAGTGACAGTAGATTTTTATAGAAGCGATAAAGATTGTGATCAATGCGATAGACAATTTGTTAGCTGGGAAATGTTAAAGCAACACAGGCTACGCGATCATTTAGGTCAAGCAATCGAAATCGGGACCAATACATGGTGCTCGTTATGCAATagATTTTTCCCAAGCGTAGAAGCTTATCAGAATCATACACAATTGCACGAAGTTAGTAACCACACGTTGACGAAAACAGCACAATCGGCGGTAGAACAACAAGTAGTGACAATTCTGAAAACCGAGGAACCTTCGAAGGAAGTGAAGAGAGAACATTTTGTAGAAGCTAGCAAATCGCTTACGTGCCCTACTTGCGGAAAGGTCTGTACTCAGCAAAGTGCATTGTCAAATCATATGCGTACCCATGAACCTAAGAGACATAAATGTGATATATGCGGACGATCTTTTGGACTTTTTATACGTTTAGCAGCACACAGAATGAGCGAACATAGCCAACAGCCTACAATGTCTCCTGTTACGGCTAGCGTCGAACAAGAAGAAGCATTAAATGCTGAAAGAGAAGCCAGAGAAGCGAGGGTCGCTAGAACTCGTACAAGAACCAGAACATATTCGGAGATGATGGAAAGGACAGATACTCCCAATCACGATGAACCATCTGCAAAAAACAATGCATCTCTAAATACCAGTGCATTTAAGAACGTGGCAAGATGTGGAATATGTTTGCAATGGTTTAGCGATCACACTACAATGTTAACACATTTGCAAACGCATTCAGACAACTACACTTGCAAGAATTTTACTTGCCACATATGTAAAAAATCTTTCAAGGAGAAATGGCAATTATTTAGACACGAGATGTCTCATAAACGTAACGAGTCTGTGCCAATGTACATATGCAGTGTATGCAATAAATCATTCACCGACAAGAATACATACAAAATACATCAGAAGACACACATTGTTGATAAAACATATCACTGTTCaaagtgtaataaaatatttttcaaagaagTGTCAATGTTGACGCATCAATGCACGGCAGACACGCTGTTTGGTAAAAAGGGTGTTCCTTCAAAGTCCTTGGAAAAAACTGGACCGTTGAATACCGGTAAAAGGTACAAATGCTCCAAGTGCAATGCATCCTTCGGTAGTTTTCAATCAAAGAATTCTCATATGAGAGTACACATGGAAGGTTCGCATACGACGGTTCGAAAGCATGAAATACAAGCGGAGGTGGAAGAAGAAGCTATGCCAAAATTAAGTCCTCAAACATCTGTTGAATATGCAATGCCTATCGAACCAAAAGTGGAGATAAGTGAAGAAAGTACACCGGCTCCTGTCAAACGAACCCTCATTAGGACAACTGGCGGatatcgCTGCGGGGTATGTCAGTCTCCATTTGTTTTACGAGAATTAGCAGTCGCACACTTGAGATCTGCGCATCCATTGATGCCGTATCAATGTCCATATTGTAAAAAACGATTCACGACTCAGTACACGTTCACGCATCATATTAAAACAGATCACCTTGACGAGCACGAGAATTGA
- Protein Sequence
- MAVPNKWENACRLCSEEKNEMLSIFGNEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLSVYKSMHLKLLSYKNIESVQIYLDAMKNSPDPCQAQLWREKARAPPPLVPLPASLPVDCPSAPTDISQEHPNACIESLPEVPCEVEIKEMNTESILETDVNIYNDKGKLYKTDAIVEDTTNSLKEENNDSQQEVEVKREEKRTSILEQVLMGRVTINDRNDLNSKEKLSSKWWCAPCNSYYKTKESLVKHMQLHCPRKYTCRKCSMCFELVEDLAKHEATSHLKVTVDFYRSDKDCDQCDRQFVSWEMLKQHRLRDHLGQAIEIGTNTWCSLCNRFFPSVEAYQNHTQLHEVSNHTLTKTAQSAVEQQVVTILKTEEPSKEVKREHFVEASKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQQPTMSPVTASVEQEEALNAEREAREARVARTRTRTRTYSEMMERTDTPNHDEPSAKNNASLNTSAFKNVARCGICLQWFSDHTTMLTHLQTHSDNYTCKNFTCHICKKSFKEKWQLFRHEMSHKRNESVPMYICSVCNKSFTDKNTYKIHQKTHIVDKTYHCSKCNKIFFKEVSMLTHQCTADTLFGKKGVPSKSLEKTGPLNTGKRYKCSKCNASFGSFQSKNSHMRVHMEGSHTTVRKHEIQAEVEEEAMPKLSPQTSVEYAMPIEPKVEISEESTPAPVKRTLIRTTGGYRCGVCQSPFVLRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKTDHLDEHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01123225;
- 90% Identity
- iTF_00360392;
- 80% Identity
- -