Cgig006460.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colletes gigas
Gene Symbol
PRDM16
Assembly
GCA_013123115.1
Location
WUUM01000011.1:9703601-9728658[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0098 0.71 10.3 0.7 2 23 237 259 236 259 0.95
2 9 0.54 39 4.8 0.1 1 23 266 289 266 289 0.93
3 9 1.2e-05 0.0009 19.4 1.3 1 23 295 322 295 323 0.93
4 9 4.6e-06 0.00034 20.7 2.6 1 23 329 351 329 351 0.95
5 9 2.3e-05 0.0017 18.5 6.0 1 23 357 379 357 379 0.99
6 9 0.00034 0.024 14.9 0.7 2 21 387 406 386 407 0.95
7 9 6.6e-09 4.8e-07 29.7 1.2 1 23 781 803 781 803 0.99
8 9 3.5e-07 2.5e-05 24.3 1.7 1 23 809 832 809 832 0.97
9 9 9.8e-06 0.00071 19.7 3.4 1 23 838 860 838 860 0.99

Sequence Information

Coding Sequence
ATGAACGGTCTCGATCTGTCTCGGCCTCTGGGCGACTACAACATGAACGGAAGCAGCGACGAAGGCGATTCGACGTCTGGCACGCTGGTCAGCGGTGGCACGGGAGTCGCCGAAAACGCGAAAATGGACGATCAGCATAGACCGCCGTCGTCCAGAGAAGAGGACAAGTCCCCGTGGGACTACAGGACCGAAGCGTACCAGGACGCGTTGAAGCAAAAGGAGCAATCGAACCGCGAATGGGTATCACCCGTGCCGGAAGTCGAGGTGGGTGGTTCGGCGGCCGGCGGTCCTCAAGTTCGTGCGCGGAAGGACATTCCACGGGGTGCGAGGTTTGGTCCTTTCCTCGCGAAATGGGCAAGCGAGCCTTACAACCCCCGCTACGCTTGGGAGGTTCATACCGGTGGTAGCGGAGTTAGGGGTTGGTTGGACGCATCCCACGAAACGAATAATTGGCTGAAATATGTCCGAAGCACCAACAGTCCGCACGCTGTTAATATGCGTCACGTGCTCATCGGTGGCCAGATGGTGTACGAGGCCGTACGAGACATAGTGGCGGGTGAAGAGCTTCTTCTTGGAGTTCGAGAACCTCTTCAGCTCCAGGATATGCTCGGTGAAAATACGACCGAGGACCGAAGCGACAGGGAGACCGCTTCGCAACACAGTGGGACCATCGACGAGGACAAAGAGGACGACGAAGAGGGTGAGACCAGATGCACCGTCTGCGATAAGCCTTTTCAAGACATCGAACTATTGGACAGCCATCTGGTAACCTGTCACAGATACCCAGCGGAACAACATCGGTGCGACAGCTGCCCCCGTGCCTACGCTTGGCGACCGCTACTCGTTCGCCATCGAGCGATCGTTCACGGTGACCTTCGCAATTATCCGTGCGAGAACTGTCCAAAGTCGGACAATCCACAGGTCTTTACGGACCCGTCGAACCTTCAGCGTCACATCAGGACGCATCACGTGGGCGCGAGAAGTCACGCGTGTACCGAGTGCGGGAAAACCTTCGCGACCAGCTCCGGTCTGAAGCAGCACACCCACATCCACAGTAGCGTGAAACCGTTTCAATGCGAGGTGTGCTTCAAGTCTTACACCCAGTTCTCGAATCTATGCAGGCACAAACGCATGCACGCGGATTGTCGTACGCAGATCAAGTGCGGTAAATGCGGACAGACGTTCAGCACGGTGACATCGTTGTCCAAGCACAAGCGATTCTGCGACTCGACGCCTCCGACCGGTCCACCCGGAGCCATGCCTCAGTTGCCGACCTCAGCACCCAGCCCTTTTCTCGTCTATTCTCGGCCTTCCGTCAGCCTGCCGGGCGGCCTGCCCTTCTATCCGCCCAGTCTGATGGCGCCCTATCCCGGTATCTTCCCAAACGCTTCAAACTTCTTGAACCCTCCTCTCCTCTTCCCGCCCAAGGTCGAGGAAACCGAGAAAAGAGGCGAGAGCCCGAAAAAGGAACGTTTCACACCGCCGAGGGTGCTGCCGCAGCACAGCAAGGTCTCGCCATCCACCGGCGAGGAAGCCACTTCCTCGTTCAGACCCTCCCCGGCTAGACCGCCCGTTCAACCTACGCCCGACAGCGACGACGATCCGACGAAGAAACCCAGGGAGGCCAGAACCAACGAGAAGAAAAGCAACTCGGCGGAACCAATCGCGAACCAAGAGCCCACGGAACAGCCTCTGGATCTACGAGTTCGAACCAAGAAGCAAAAAACGAGCTGCAACCTCGTCGAGAGAAAGAGTCGCAGTCCGTCGCCCGGGCCGATACCGATGGAAGAGGCCCTGCCCGCCCCACCAGCCCCGCCAGCCCCCGATCATCGGAAACCCGACGAAGAGAGTCTCATGATGGTGGAAGTCGACTCGAAGGACGTGGCCAGCAGTCCACGATTGAGAACCAGCCTGGCCACCGAGCAACCGCCTACCAATACTCCGCCGCACATGGCCTATCCCAGACCGATTCATCCGATGTTTCTGGAGGCGATGTACCGTGGGCCCACCGGTAACTTTCCAGGGTTTCCGACCGGGCATGCACCCCATGCACCCCCTGGATCCgctgccgccgccgccgccgccgccgccgccgccgccgcggcCGAATCTAGGTTATTACCGCCGCTACCACCGTTCGGTCCGCCTCGCGGACTTCCTTTTTTAGGGACTCTTATGAACGGGCTCAGCGGAGCTAGACCAGGCGGAGGAGGATTCGATCTGCTCGCCAGACCACCACTGGCTCCGTTCTCCGGCGTAAAGCCGTTTCAAGAGGCTGTCATCGCGCCTCACCATCATCACCATCATCACCATCACGCTCACGGCAAAATGAAAGACCGTTACTCGTGCAAGTTCTGCGGTAAGGTATTCCCCAGGTCGGCTAATCTGACCAGGCATCTGCGCACGCACACCGGCGAGCAACCGTACAAGTGCAAGTACTGCGAGAGGTCCTTCAGCATCTCCAGCAACCTTCAGAGACACGTCAGGAACATTCACGACAAGCAACGACCGTTCAAGTGTCCTCTTTGCGAGAGGTGCTTCGGCCAGCAGACCAACTTGGACAGACATCTGAAGAAGCACGAAGCCGACGACGGTAGCGGCGTCGTCTCGGTGGCCGATTCGCCGGGCAGTAGCAACGAAAACGAGCGAGAGGATACGTATTTCGACGAGATCAGATCGTTTATGGGGAAAGTGACCTACGGTGGCGAAGCAGGTTACGGGCTGCCGTCCCATCATCCGGCCTACATTCCCAGTCGTCTGCACGAGGTGCACGAATCCAAGATAGAGACCGAGTACGACGAAGACGAGGACAGCGAGGAAGGTGTTTCGCCGTTGGACGACGCCGACGGTTTGTCGCCCCTCGAGGTCAAAGATTCCACtccgccgccaccgccgccgccgccaccacCCCCGCAATACGATCTAAAGCTAAGGGAGAAGCAGGAGTTGCTCAACAACAATACCGCGGAACCGGTCATCGAGATCTCTACATAG
Protein Sequence
MNGLDLSRPLGDYNMNGSSDEGDSTSGTLVSGGTGVAENAKMDDQHRPPSSREEDKSPWDYRTEAYQDALKQKEQSNREWVSPVPEVEVGGSAAGGPQVRARKDIPRGARFGPFLAKWASEPYNPRYAWEVHTGGSGVRGWLDASHETNNWLKYVRSTNSPHAVNMRHVLIGGQMVYEAVRDIVAGEELLLGVREPLQLQDMLGENTTEDRSDRETASQHSGTIDEDKEDDEEGETRCTVCDKPFQDIELLDSHLVTCHRYPAEQHRCDSCPRAYAWRPLLVRHRAIVHGDLRNYPCENCPKSDNPQVFTDPSNLQRHIRTHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKSYTQFSNLCRHKRMHADCRTQIKCGKCGQTFSTVTSLSKHKRFCDSTPPTGPPGAMPQLPTSAPSPFLVYSRPSVSLPGGLPFYPPSLMAPYPGIFPNASNFLNPPLLFPPKVEETEKRGESPKKERFTPPRVLPQHSKVSPSTGEEATSSFRPSPARPPVQPTPDSDDDPTKKPREARTNEKKSNSAEPIANQEPTEQPLDLRVRTKKQKTSCNLVERKSRSPSPGPIPMEEALPAPPAPPAPDHRKPDEESLMMVEVDSKDVASSPRLRTSLATEQPPTNTPPHMAYPRPIHPMFLEAMYRGPTGNFPGFPTGHAPHAPPGSAAAAAAAAAAAAAAESRLLPPLPPFGPPRGLPFLGTLMNGLSGARPGGGGFDLLARPPLAPFSGVKPFQEAVIAPHHHHHHHHHAHGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNENEREDTYFDEIRSFMGKVTYGGEAGYGLPSHHPAYIPSRLHEVHESKIETEYDEDEDSEEGVSPLDDADGLSPLEVKDSTPPPPPPPPPPPQYDLKLREKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00360384;
90% Identity
iTF_00360384;
80% Identity
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