Basic Information

Insect: Colletes gigas
Gene Symbol: -
Assembly: GCA_013123115.1
Location: WUUM01000020.1:4247775-4251428[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.021 1.5 9.2 0.2 3 21 8 27 6 28 0.85

2 14 1.6 1.2e+02 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.8 58 4.3 0.4 1 12 238 249 238 258 0.89

4 14 0.012 0.88 10.0 3.1 1 23 368 390 368 390 0.97

5 14 5.7e-05 0.0041 17.3 0.2 2 23 394 415 394 415 0.97

6 14 0.00056 0.041 14.2 4.9 1 23 426 448 426 448 0.98

7 14 0.027 2 8.9 0.2 1 23 467 488 467 488 0.79

8 14 0.0006 0.043 14.1 0.1 2 23 494 515 493 515 0.95

9 14 4.3e-05 0.0031 17.7 4.8 1 23 543 565 543 565 0.99

10 14 1.9e-06 0.00014 22.0 3.7 1 23 571 593 571 593 0.96

11 14 0.00098 0.072 13.4 3.9 3 23 601 621 599 621 0.97

12 14 1.3e-06 9.4e-05 22.5 0.8 1 23 627 649 627 649 0.98

13 14 8.2e-05 0.006 16.8 0.2 1 23 653 675 653 675 0.99

14 14 0.00035 0.026 14.8 0.2 1 23 683 705 683 705 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.021	1.5	9.2	0.2	3	21	8	27	6	28	0.85
2	14	1.6	1.2e+02	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.8	58	4.3	0.4	1	12	238	249	238	258	0.89
4	14	0.012	0.88	10.0	3.1	1	23	368	390	368	390	0.97
5	14	5.7e-05	0.0041	17.3	0.2	2	23	394	415	394	415	0.97
6	14	0.00056	0.041	14.2	4.9	1	23	426	448	426	448	0.98
7	14	0.027	2	8.9	0.2	1	23	467	488	467	488	0.79
8	14	0.0006	0.043	14.1	0.1	2	23	494	515	493	515	0.95
9	14	4.3e-05	0.0031	17.7	4.8	1	23	543	565	543	565	0.99
10	14	1.9e-06	0.00014	22.0	3.7	1	23	571	593	571	593	0.96
11	14	0.00098	0.072	13.4	3.9	3	23	601	621	599	621	0.97
12	14	1.3e-06	9.4e-05	22.5	0.8	1	23	627	649	627	649	0.98
13	14	8.2e-05	0.006	16.8	0.2	1	23	653	675	653	675	0.99
14	14	0.00035	0.026	14.8	0.2	1	23	683	705	683	705	0.97

Sequence Information

Coding Sequence: ATGGGATCATTAAACCTTGTTTGTCCAATGTGTTGTGGTGAAACATTTAACAGTCCACAGTCATTAAAGTACCATTTATTAAGTATGACAGACAACCTATATTGTCCTGGTTGTTCCCAGCGTTCTGACTCGGTCATGGCACTCATTCAACATTTGGATCGGTGTGGACAAAGTGTTGATTCAGAAGAACCACCTGAATCAGAGCATGAACCTAGGCAAGAGACTCGTCAAGAATCAGAACCAGATACGGAGGTTTTAATGagcaCAAATGTTGAAGAAATAGACCAAAGTTTTCTAGCAACTGTAAATGACAGTGGAATTATGATAGTTGGTGGGCCCCAAACAATACAAGTTGATGAAAATGGAGAAATTAAAGTCATAGAAAAAATGGAAACTGAAGAAATAGAGCAAACACAAATGGAGAAAAATTCTCTAGAATTTGAGATAACTGAAAGAGTTCCTAATACCACTAACAAAGCAGAAGGAAAGTCTTTAATTCAAAATCAGCTAGTAACTATTACTGCTTCAGAGTCAGAtgataaaaacagaaataaaaatgtaatcacTATTTTACCCGATGGCTCAGAACTTCTTGATGGAAACACGGGTGCTTTGATAAATATGGATCATATAAATGATGTGGGTGAACTAGATGAAGATGGACTGTTGCATGTGAAGCAAGAACTTTGCGagATGGAACCAGAAGCTGTTTATAGCTGTACTAGTTGTGACATGAGTTTTAATTCTGTTGTGGAACACATAAAACAATATCACGATGGACAAGAAGTATTACTTGAAATAGCTGATCAATTGGATGATTTACCTACAGTATCTGCATCTAATGCTTTAACATCAGAATCTGGAAATGTAGTTAACACGCGAAATAGAAAAGGCATGAATACTCTTCGTACAGAAGAATGCATAGACAGTGAAGGAAGACTGTATACACGAAAAGTAGTGCAAATAGAAAGGTTTTGGGACAGAACTGCAGCTCAAACACCGCTGCAATCTACAAAGGCACCAATGATTGAGAAGTTCTTTTCTAATGTGGAAGGAGTAAAAgTACGTGAGAAGAGATTAGCAGAAGCACCATTGAGAATGTACAGATGTAATCAGTGCCTTCAGCAGTTTTCAAAACTAGGAAATTTTCGAGTACATGCGTGTCTACACGGTCATAATCGTTGTGATAATTGTGATCAAACGTTCGCAACACCAAAAGCGTTACAGCTACACGCAAAGGTACATGAAGGTGAACCAGATCCAAATCAGAAAACTTTTGTGTGTGAAACCTGTGGTACAGAGTTTTGTTCGCACAAAAGCTTGCGTTTACATTCTCGAATGCACGCGCCAGTCAGAGCAAGACACGTTGACGCACCGGAGGGAACACCTAGTGCGACATTCACTTGCCCTGAGTGTGgTAAAACGTTAGCAGAATCATACAAAGAAGCACATATGTCATTGCATTCCGGTGACTCTGTAACGTGTACAGtttgcaatagaaaatttgattCTGCTGATAGTTTAGCGATGCATGCTGCGGTGCACACGGAATTTAGTCAATCTCATTCACCGACGCCACCTACCACAGAAACTACAACTGTTGAACCTCTAGAAAGTCAAAAGCCTTATCAATGTCAGCACTGTGGTCGTAGATTTACAAGACCTCATGAGAAAGTGAAACACGAGCGCATTCACACTGGAGAAAAACCACACGCGTGCGAAGTGTGCGGTAAAACATTTCGAGTTTCCTACTGTTTGACCTTGCACATGAGAACACATACCGGAGTCAGACCTTACGGATGTCAACACTGTGGCAAGAGATTCAAAGCTTCTTCCGTATACAATCATCATTTACTCACACACGGAGAAGAGCGTGCTTACACATGCCCGTATTGTCCGAAAACTTTCAAAACACGTGTTCAATTAGCAGGCCACAAAAACAGTCATACAAAGCCTTTTCGATGCACAGAATGTTCTAGACCGTTTGCGTCACTTTACGCCGCACGTGCTCATATCCAAACTCACAAAAAAGACAATAATTTGAAGTTTAGTTGTTATATTTGTGGTGCATCATATGGTAGAGCATTTGCGCTGAAAGACCACTTGAAACAGCATGGTCAAGATGTACTAGCTCCGCCGGAGCCAGCTAGGGAGGAAGAAGTTCACGAAGGGGAAGATTTTTTGCTTACAGAAGAAGTTGAGGAGGATGAATTGGTTATCCCATCGCCACTTCCCGTTGCACAATCATCGGAAGCCGAAGACACGGAATGA
Protein Sequence: MGSLNLVCPMCCGETFNSPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQSVDSEEPPESEHEPRQETRQESEPDTEVLMSTNVEEIDQSFLATVNDSGIMIVGGPQTIQVDENGEIKVIEKMETEEIEQTQMEKNSLEFEITERVPNTTNKAEGKSLIQNQLVTITASESDDKNRNKNVITILPDGSELLDGNTGALINMDHINDVGELDEDGLLHVKQELCEMEPEAVYSCTSCDMSFNSVVEHIKQYHDGQEVLLEIADQLDDLPTVSASNALTSESGNVVNTRNRKGMNTLRTEECIDSEGRLYTRKVVQIERFWDRTAAQTPLQSTKAPMIEKFFSNVEGVKVREKRLAEAPLRMYRCNQCLQQFSKLGNFRVHACLHGHNRCDNCDQTFATPKALQLHAKVHEGEPDPNQKTFVCETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKTLAESYKEAHMSLHSGDSVTCTVCNRKFDSADSLAMHAAVHTEFSQSHSPTPPTTETTTVEPLESQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEVHEGEDFLLTEEVEEDELVIPSPLPVAQSSEAEDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -