Cgig006128.1
Basic Information
- Insect
- Colletes gigas
- Gene Symbol
- -
- Assembly
- GCA_013123115.1
- Location
- WUUM01000011.1:4076369-4082945[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.61 44 4.6 5.6 2 23 243 265 242 265 0.96 2 21 0.0044 0.32 11.4 2.3 1 23 314 336 314 336 0.97 3 21 0.013 0.98 9.8 1.6 1 23 385 407 385 407 0.98 4 21 0.052 3.8 8.0 0.2 1 19 462 480 462 482 0.94 5 21 5.2 3.8e+02 1.7 3.7 1 23 495 518 495 518 0.80 6 21 2 1.5e+02 3.0 4.2 1 23 523 545 523 545 0.96 7 21 0.00068 0.049 13.9 0.1 1 23 591 613 591 613 0.97 8 21 0.00054 0.039 14.2 0.1 1 23 619 641 619 641 0.97 9 21 2e-07 1.5e-05 25.0 0.5 2 23 685 707 685 707 0.96 10 21 0.00064 0.047 14.0 0.2 3 23 716 737 716 737 0.98 11 21 0.00011 0.0079 16.4 0.3 3 23 744 765 743 765 0.93 12 21 6.2e-05 0.0045 17.2 0.6 1 23 775 797 775 797 0.96 13 21 0.03 2.2 8.7 0.4 1 20 855 874 855 874 0.97 14 21 0.0028 0.2 12.0 0.1 2 23 894 915 893 915 0.96 15 21 0.00018 0.013 15.8 0.5 1 23 929 951 929 951 0.97 16 21 0.00052 0.038 14.3 4.9 3 23 977 998 975 998 0.89 17 21 0.023 1.7 9.1 1.8 2 23 1048 1070 1047 1070 0.93 18 21 0.0079 0.57 10.6 1.5 3 23 1102 1123 1100 1123 0.92 19 21 0.041 3 8.3 0.2 1 23 1130 1154 1130 1154 0.94 20 21 0.00071 0.052 13.9 1.7 1 23 1159 1182 1159 1182 0.97 21 21 0.018 1.3 9.4 0.8 2 23 1212 1234 1212 1234 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTGGTGGAGTTGCAGAACATGGAAAACGTGTGCAGGCTCTGCCTCTCCACCGACGAACCGAAGTCGTCGGTTTTCGGGGTACAAGACTCTCCGGTACCGTTGGCCACTAAGATACAAGCCTGCCTGTCGATTCAGATTTTAGCCACCGATAGATTATCAACAGACATATGTGAAAGGTGTGTTAAAAATGTGAATCAGTGGCATAATTATAAAGAAGCTTGTCTTCGTACACAAGATAAATTGCATCAATGGTTGGAAAAGCATTTGCAGTCGATTCCTATGGTTATAACTATCAAGGATGAACCTGTGGATCTTGATTTTTACGAAGATAACGTTGAAGTTATTTCAGAATCCGCCACTGATTCTGATTTGGAATCAGCTACTCTCGaagaaagtataaataatttatcaaacaGTGTTCATGTTGAAGGAGTAAACgacgaagaaacaaatttaccAAAAGTTCAACCAGCACCAACAAAAGATGTAGACCCGTTAGCAAAATCTGAGTTGCAAGTAGACTATGACACAGATTGTACCATAGAAATAGAATCCGTTACTGGTAGCGAACTGTTGCCAAATCCTCTTTCCAACAAGGAAGACAGGGTGATGGAAGCCGATTCTACGCAAAAGTCTAGCGCCTCGACATCGGCAAGTAAGAAAAAGATGAGACGGGGCCCGCACACTCACTTTCGAGGAACACGTGTTTTCAAGCAAAAGTGCGTGCACtgtcaaattaatttacactcGAAATACTCTTACACGAAGCACATGGAAAGATTTCATACAGACAAGCCGAACGGCAACAACGATACAACGTTAGACGACGAGGAAGAGCTGATAGAAGATTTGGAGGATGAATTAATGAGCATGGAGAAGGATGCCCCCTTAACGCAAGTACAGCAAAGTATTATCAGTCAATTGAAAACGTTCTCGTGCTATTCCTGCCAAGAAACCTTCACCGATCGGAGAAATACGCTTTCTCACATTCGTCAACACATGCCTGATTTGAGGCCGTACACATGCATCGCGTGTTTGACAGAATTCCCTGACCGATCAATGTACAAGTTACATTGTGGTGCGTCGTTCGAATGTGCAATGAAAATTGCATTGGTCGTGCCTAACCATGGCGAGGAGAAGTACTTTACATGCAACATGTGTTTGCGATCTCTGCAGAACAGAAAAGAATTACTGAATCACCTGTCGAAGCACTCTGACAGACAATACGAAGAACTGATCTCGCCATCGCGTTCTCCCCCTAAGTTAAAACCAATGGCACCTCTGCCGCGTCTGAAGCAAGAAGTTTTGAAGAAATCGCTCGAAACGGGTCCGATTATTCCTCGACCCTATAAAAACGGTGATCCTGCGCATAATCACGTTTGCGATTTGTGCGGAATGATATATCGATACAGGCCTAACATGCTGAAACACAAAGATCTGTGTCAACGTCTGTCGCCAGACGTTAGGACGTCCTACAAATGCGTGCATTGCGGTATGACGTATCTCGTGttcaaaaagtttcataatCACATCACTCTGGACcataaaaagaaagatttcATTTGCTCCGAGTGCTGTGCCAAGTTCAGATCTTCTACCGATTTCTTGGAGCATCACGAGTCCCATCGCGAGGAACGGAACCAGAAGCAAATGCTCGAGAAGGAGTCCGCGAAACCCATGCAAAGCATCACGACGCCGATCAAGGATTGGGACACGTTCGAGGCGGAAATAAACGCGGCCAAGATATCCGACAGCAACCAGTACAGCTGTGCTTTGTGCAACTTGGAGTTCGCCACCAGGGCCGAGTTGACGGAGCACAGGAACCTCCATCTGAAGGTGAAGATTTACTCGTGCGTGATCTGTCGCAGCATGTTCAGCAGCGCGGGTGCTCTGGAGAGCCACATGAAGGATCACGGTATAGAGGATCCCAACGAGCAGACCGCGAACAGCTCCTGCGTGGAGTACGGAACAATGGAGGAGGACTCGCGGGACTCCAAGTCGATGAACGCCAGCGCAACCTCGGATCCTGGCTCGAACAAGAACGAATGCAACCTGTGCGGCAAGATGTTCTCGAACTACGCGAACCTCAAGAGACACATACGGAACATTCACAAATCGGGCAAGTCTCACATCGGTTGTCCCGATTGCTCGCGAATGTTCAACAGCAAGGAGATCCTCGAACGGCACATATTAACCGAGCACAAGTCGGCAAAGAACATGTGTCCCCAGTGCCCAAAGAGTTTTGTGTTCAAAGGGAATTTGAACCTTCATTTCCAGAACGCCCACGGCGAGAGGACTCAAACGAAAGGTGGCCACAAATGCGACCTCTGCGGAAAGAGTTTCGTGGAAGAAGCCTCTCTCAAGATACACAGATCATGGCACAGTCGAGCAAACTCTCGCTTAAGTTTACGATTCACGCCGAACGACGACAAGAAATCAATGAAACAGACGTTCTTGACCAAACAGGAGCAGGACGTAAATTCCACCCCCGACAGACCGGCCAGAGCACGGAAATCTTTCCCAAATCCGCCGCCCGCGAAACCCCAGGGCAACTTCCAATGTCAGGTATGCAACGATAAATTCAACGACGTGACCGAATTGAGGAAACACTTGTGGGACGTGCACTGCGCCCGCACCAAGGCCGAGAAGTCCTTCACGGGAGACGAGCTTCAATGCGAGCTCTGCACGAACGTTTACCCGGACAGGGAGACGCTGAACATGCACATGCAGTGGCACGAAGCCTATCCGATTCTCAGCGACATCAGGAAACCGACTTTCCCCTGCGAGATCTGCGGAAAGTTGTACAGCTCCAAGAAGGTACTGTGGAGACACAAAAAGCTCCACAAAGCGACCAGCATCGCCGCCGTCAAGTTGCATGCGATGGGCAAGAAATCGCCATCGATCAGCCAGCAACACTTGTGCAACGTCTGCCACAAAGTATTCAGCAGCAATCAATCCCTGCAGCGTCACAAGTTCAACTTGCACGGCGACATGTTGAACTCGTCGCTGTACAACAACACGCGAAGATTGTCGCAGGAGGAGTCGAAACCGAAGAAGGTGAAACTGGAGGACGAGGCCCTGCAAAAACCGTTGACCGCCATGGAGGCTGTGAACACTGGCAAGAAGTCGGTGATGTGCCACGTCTGTAGAAAGTTCTTCCCGAACATGAGCGTCCTGTACAAGCACAAGCAGCTGATGCACAACAAGTCGCGCGTCGTCAAGAACATCGTCAAAGCGAATATAATGACGACAACGGAGTGCGTACCGTTGGCCGGGACCAACGGCAAGGTCTGCTGCAACGTCTGCTACAAGGAGTTCCCGGGTCTGTCGAATTTACGACAGCATTTCACCGTCAAGCACAAGAACACTCCGCCGCAGCACGCTTGCCCGGTCGACGGTTGCAAGCTGATGTTCCCCACGCTCCTGAGCTTGAAGAACCACGAGCTCTCCCACACCAGCATGATCTTCAGCTGCAACCTATGCGGCAAACATGTGTTCACCAGAACGGCGATGACGAATCATATGCTGACGGTGCACAACACCGTCTACGACGCTGATCAGAACAAGAACTTTCACAAAGAGACGGACCTGACCAGCTACACCGTGAAGGGCGCCATAGACGCGACCTGTCCTTATTGCAAGATCAAATATCCCAATAACAGGGCCATGAAGATCCACTACTTCAAGTTTCACGACGGTACCGATCAAGCGTAG
- Protein Sequence
- MDEVVELQNMENVCRLCLSTDEPKSSVFGVQDSPVPLATKIQACLSIQILATDRLSTDICERCVKNVNQWHNYKEACLRTQDKLHQWLEKHLQSIPMVITIKDEPVDLDFYEDNVEVISESATDSDLESATLEESINNLSNSVHVEGVNDEETNLPKVQPAPTKDVDPLAKSELQVDYDTDCTIEIESVTGSELLPNPLSNKEDRVMEADSTQKSSASTSASKKKMRRGPHTHFRGTRVFKQKCVHCQINLHSKYSYTKHMERFHTDKPNGNNDTTLDDEEELIEDLEDELMSMEKDAPLTQVQQSIISQLKTFSCYSCQETFTDRRNTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVVPNHGEEKYFTCNMCLRSLQNRKELLNHLSKHSDRQYEELISPSRSPPKLKPMAPLPRLKQEVLKKSLETGPIIPRPYKNGDPAHNHVCDLCGMIYRYRPNMLKHKDLCQRLSPDVRTSYKCVHCGMTYLVFKKFHNHITLDHKKKDFICSECCAKFRSSTDFLEHHESHREERNQKQMLEKESAKPMQSITTPIKDWDTFEAEINAAKISDSNQYSCALCNLEFATRAELTEHRNLHLKVKIYSCVICRSMFSSAGALESHMKDHGIEDPNEQTANSSCVEYGTMEEDSRDSKSMNASATSDPGSNKNECNLCGKMFSNYANLKRHIRNIHKSGKSHIGCPDCSRMFNSKEILERHILTEHKSAKNMCPQCPKSFVFKGNLNLHFQNAHGERTQTKGGHKCDLCGKSFVEEASLKIHRSWHSRANSRLSLRFTPNDDKKSMKQTFLTKQEQDVNSTPDRPARARKSFPNPPPAKPQGNFQCQVCNDKFNDVTELRKHLWDVHCARTKAEKSFTGDELQCELCTNVYPDRETLNMHMQWHEAYPILSDIRKPTFPCEICGKLYSSKKVLWRHKKLHKATSIAAVKLHAMGKKSPSISQQHLCNVCHKVFSSNQSLQRHKFNLHGDMLNSSLYNNTRRLSQEESKPKKVKLEDEALQKPLTAMEAVNTGKKSVMCHVCRKFFPNMSVLYKHKQLMHNKSRVVKNIVKANIMTTTECVPLAGTNGKVCCNVCYKEFPGLSNLRQHFTVKHKNTPPQHACPVDGCKLMFPTLLSLKNHELSHTSMIFSCNLCGKHVFTRTAMTNHMLTVHNTVYDADQNKNFHKETDLTSYTVKGAIDATCPYCKIKYPNNRAMKIHYFKFHDGTDQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00360370;
- 90% Identity
- iTF_00360370;
- 80% Identity
- iTF_00360370;