Cgig007519.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colletes gigas
Gene Symbol
chn
Assembly
GCA_013123115.1
Location
WUUM01000012.1:58544-62447[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 8e-06 0.00058 20.0 3.5 1 23 340 362 340 362 0.99
2 14 1.8e-06 0.00013 22.0 1.1 1 23 368 391 368 391 0.95
3 14 3.9e-05 0.0028 17.8 2.4 1 23 397 419 397 419 0.98
4 14 1.3e-05 0.00096 19.3 1.6 1 23 425 447 425 447 0.97
5 14 0.00011 0.0083 16.4 2.9 1 23 453 475 453 475 0.97
6 14 0.0051 0.37 11.2 6.3 1 21 597 617 597 618 0.94
7 14 0.006 0.44 10.9 0.3 1 23 673 696 673 696 0.94
8 14 0.00019 0.014 15.6 2.3 1 23 728 750 728 750 0.98
9 14 8.1e-06 0.00059 20.0 1.7 1 23 756 779 756 779 0.96
10 14 2.2e-05 0.0016 18.6 0.4 1 23 785 807 785 807 0.98
11 14 6.5e-08 4.7e-06 26.6 1.0 1 23 813 835 813 835 0.99
12 14 0.00018 0.013 15.7 1.8 1 23 841 863 841 863 0.98
13 14 1.8e-05 0.0013 18.9 3.5 1 23 869 891 869 891 0.96
14 14 0.00019 0.014 15.6 2.7 2 23 898 920 897 920 0.94

Sequence Information

Coding Sequence
ATGGAATCTGAAAATCCTGTCATGTTGGAACCGTGCGGAGAGgattcgattttaattcaaaCAGTGAAAGATATAGTTACAGAAAGTGCAAACACCGAATTAGAAAGCGAGGAAGAATTTTTTGTAGTAACAGATGTTCAGAATAAAGAACAAAATGTAATAGAAGCGTCTAACGAGGAATCGATAGTAACTCGGTCCGAGGAACGATTATCATGGTCCAATTTATGTAGAATATGTGCCAATATCGGTCATCATCTAATTCCAATATTTGAGGGAGAAGGTTTACAACACAACTTGTGTagtaaaattcataaatatttgccTATACATGTATCTCAAACGGATACTCTTCCACTACAATTATGTTATCATTGCGCAGCGACGTTATTAGCATGGCACGAGCTTTTAGAAGGATGTCTAAATGCAGAAAAACGATTATTAGAAATACAACATGCCTTGGAAGAAAAACAAAGCCAGGAAGGTTTAGAAGCTCCGGTACAAGATACATCGGTATACAACATACCTGAATCTCttCATCAACAACAGGAAACGATTAAGGATGAAGATTATTGGGAATCGGCTGTTAACGATTCAGACAGGTCCAGTAGTATGCGGACACCATTTAAGGTGTTCCTAGACACGCAGAATGTATTTCGGAAGCCGCACAGAAAAAAATACCAGCTACAAGAAAGAAAGGCTACAGTTAGCAGAGACTACAATTCGGTATGGATCACGGTAATGAATTCAACGCTCGATCAACCTGTCGGAATGGCTGATCAGGTGCAAGATAATGATACCGATGTAAAGGAAGAGGTTTCCCAGCCGTACAAGTCAAATTGTTTCGAGAAGTCGAGAGTGACTAATGAAATGTGCAAGTCACCAAATCCTTCGAATACAGAAAATAGAGAGGGAAAGATGAAAGTAAAGCGTAAACTTTGTAGAAATAAGAGAAACAGCTCGAAAGATTCATGCGAAGATATTAAACGCAAGGGTAGTTGCACGGACATTCGGGAATCTTATCGATGCGCCGAGTGCGGGAAAtgctttaaattaaaagattcgTATTTAAGACATACAAGAATTCATAAAGACGAAAGACCATTTACTTGCCACGTATGTGGAAAACAATTCCGGGATTCCGGTGGTCTTTCCAGGCATTTAAAAGACGTACAcgcgaaactaaaaaatttcacatgcGACATCTGTGGTAAGTGTTTCGCGTCAAAAGCTACGAGGGATGATCATCGCAGAACGCATACAGGAGAAAGACCTTACAAATGCGATTCGTGtggaaaaacttttaaatcgAAAGCTTCCCTATACATTCACAGTAAATTACATACGGACGAATTTCCTCATCCGTGTTCCTATTGCAACAAAAAATTCCGTAGAAGACAAGAAATGCTGGCACACGTTACTACTCATACAGGAGAGAAGAATTATGGTTGCGACGTGTGTTCGAAAAGgTTTGGTCTACTTCCGAAGAAATCCTTTGTGGCATACTGTTCGTGGTATACGACAACGATGTgtgcaaataatataattcagaCCACTAACAAACATAAAGTTGTTCAGAAATTCAATGAAACTAACATAGACGAAAAGATAAAAAGTAACGGCGACGGCGACGGCGACggcgacgacaacgacgacgacagcACCAACTTTTTTAACAATTCCGATAGCAGAGATCAATTTGACGTGTCAAATGTAATGCTATGCTCTAGAGAGTGTTCGAACGAGACGGTATTatcaatgaaaaaatatacaagttCATCCAAGGAACAGTACGAGTGTAAAAACTGTCAGCGTTATTTTAAGAGAGAATGCCATTTAACGCGGCATACGTCTAAATGCaaaagtgaaagaaaaagTAGCATAAAGATGATAAATGCGAGCTTGGAGGAGGAAAGTGCATCGAAACGgtcgaataaaagaaaagagaaaaatagaatGGGCGAGGATGgaagaaattggaaattttatcaaaagtGTAAACGTAAGAGACACGAAACGTATCCGTGCGTATATTGCGATTACACagcgaataaaaagaaattgcttCAAGTTCATTTATCGGAGTCGCATTCAGAATTCATGgataaaaagaagaagaagctaAAATACGCTGATCGAGAACTGGTTATGCGTGCTAAGATAGAGGTTGATGGAAAGGTTTATTATCACTGTAATCAGTGCGgtaaaaatctttattcgCCGTATACATTCTTCTGGCACATACGAATACACACCGGAGAACGGCCTTACACCTGTCATATGTGCGGGAAACAGTTTCGCGTGAACCAGGGTCTAGCGAGGCACTTGCGCGACACTCATGCCGgtataaagaatttttcttgcGACATTTGTGGCCGACCGTTCACCACGAAGCGTAACGCTGACGATCACAGACGTATACACACGGGTGAGCGACCATACGTTTGCAACATTTGCGGGAAATCGTTCAAGCAGAAGGCTTCTCTCTTCGTACACAATCGCACCCACTCGGATGTTTTTCCTTTCAAGTGTAACCACTGCGAGCAACGTTTCCGCACAAGACCGCCGCTCGCGGTTCACATAACCAAACATACCGGCGAAAAGCCGCACGCGTGCGACATATGCGGTCGTTGTTTTCGCATTAAATACGAGTTGAAGCGTCATCGACTGGTACACTTTGACGAGAAACCGTGGCAGTGCACGGAATGTGATCATTCGTTTCGTCAGAAACGCTACCTAGTTAACCATAACAGACTTAATCATAGCACAAATTGA
Protein Sequence
MESENPVMLEPCGEDSILIQTVKDIVTESANTELESEEEFFVVTDVQNKEQNVIEASNEESIVTRSEERLSWSNLCRICANIGHHLIPIFEGEGLQHNLCSKIHKYLPIHVSQTDTLPLQLCYHCAATLLAWHELLEGCLNAEKRLLEIQHALEEKQSQEGLEAPVQDTSVYNIPESLHQQQETIKDEDYWESAVNDSDRSSSMRTPFKVFLDTQNVFRKPHRKKYQLQERKATVSRDYNSVWITVMNSTLDQPVGMADQVQDNDTDVKEEVSQPYKSNCFEKSRVTNEMCKSPNPSNTENREGKMKVKRKLCRNKRNSSKDSCEDIKRKGSCTDIRESYRCAECGKCFKLKDSYLRHTRIHKDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKNFTCDICGKCFASKATRDDHRRTHTGERPYKCDSCGKTFKSKASLYIHSKLHTDEFPHPCSYCNKKFRRRQEMLAHVTTHTGEKNYGCDVCSKRFGLLPKKSFVAYCSWYTTTMCANNIIQTTNKHKVVQKFNETNIDEKIKSNGDGDGDGDDNDDDSTNFFNNSDSRDQFDVSNVMLCSRECSNETVLSMKKYTSSSKEQYECKNCQRYFKRECHLTRHTSKCKSERKSSIKMINASLEEESASKRSNKRKEKNRMGEDGRNWKFYQKCKRKRHETYPCVYCDYTANKKKLLQVHLSESHSEFMDKKKKKLKYADRELVMRAKIEVDGKVYYHCNQCGKNLYSPYTFFWHIRIHTGERPYTCHMCGKQFRVNQGLARHLRDTHAGIKNFSCDICGRPFTTKRNADDHRRIHTGERPYVCNICGKSFKQKASLFVHNRTHSDVFPFKCNHCEQRFRTRPPLAVHITKHTGEKPHACDICGRCFRIKYELKRHRLVHFDEKPWQCTECDHSFRQKRYLVNHNRLNHSTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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