Cgig008798.1
Basic Information
- Insect
- Colletes gigas
- Gene Symbol
- Zfy2
- Assembly
- GCA_013123115.1
- Location
- WUUM01000001.1:4721432-4725435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.026 1.9 8.9 0.6 2 23 66 86 65 86 0.91 2 18 0.00031 0.022 15.0 5.3 1 23 92 115 92 115 0.97 3 18 0.00094 0.068 13.5 4.4 1 23 121 144 121 144 0.96 4 18 3.2e-05 0.0023 18.1 0.8 1 23 150 172 150 172 0.98 5 18 6.4 4.6e+02 1.4 2.5 2 22 178 198 177 200 0.80 6 18 0.00028 0.02 15.1 0.5 1 23 207 229 207 229 0.97 7 18 1.8e-06 0.00013 22.0 0.4 1 23 233 255 233 255 0.98 8 18 0.00017 0.013 15.8 1.6 1 23 261 283 261 283 0.98 9 18 2.3e-06 0.00017 21.7 1.3 1 23 289 312 289 312 0.97 10 18 0.00068 0.049 13.9 0.8 1 23 462 485 462 485 0.96 11 18 1.7e-05 0.0012 19.0 4.0 1 23 491 513 491 513 0.98 12 18 0.011 0.76 10.2 7.6 1 23 522 545 522 545 0.94 13 18 0.00081 0.059 13.7 1.2 1 23 551 573 551 573 0.95 14 18 1.1e-05 0.00078 19.6 2.4 1 23 578 601 578 601 0.96 15 18 0.0014 0.1 12.9 0.7 1 23 607 629 607 629 0.98 16 18 7.8e-08 5.7e-06 26.3 0.7 1 23 633 655 633 655 0.99 17 18 0.00022 0.016 15.5 5.3 1 23 661 683 661 683 0.99 18 18 0.0002 0.014 15.6 5.4 1 23 689 711 689 711 0.97
Sequence Information
- Coding Sequence
- ATGTTAAAACGTGTGTCGCAAACACCGAAGAAGAGGACGGTGAAAAAAAGAGTTCTAGTCAAAACGTCGCCGAAAACTGCGACACCGGCCACGAAAAGATCACCGACTAACACGGCGACGAAGAAGCCGAAGGCGGAAGCTTCGCAACGGGAAGAAAGTGAAAATAGTGAAGAGACAGTGAAGCTCGAACAAATCTACTGTGATATCTGTAAAGTTACCATCTACGCGAAAAATTATAAGAGACACATGATGAAACATAATAATTCCAATAGTTTCCAATGCGAGCTGTGCTCGAGAAAGTATAAACATAAAAGAACTTTAACGAGACACAAACTGACTATACACGGAGAGGCGCTTTTACACAATTGCCAGTACTGTGACTTTACGACTGTTCACTCCTCCTACTTGCAGGTTCATATTATGCGTAAACATACCATCAGTTTCCCTTTCCCCTGCGGCAAGTGCGACCGGAAGTTCCGCATAAAAGCCGATTTCATGAAGCACATGGTCACCCACGACGGGGAGCCATGCATTTGCGACGTGTGCGGCACCAAAGTGGCGAACAAGATTTCCCTCTACTTCCACAAGAATCACAATCACACAGTGAAAGACGCCAGGTACCCGTGCCCGATATGCAAGAAGAGGCTGCAGACTCAGAAGAATTTGGACAGCCACGTTCAACAGCACGACCGGAAGTACATATGCGAGGAGTGTGGGATGCAATTGACGCGGAAGACCGCCCTCAGGAAGCACATTCGGACCCACACGGGGGAGAAGTCGTACTCCTGTCACATTTGCTTCAAGGCGTTCGCGAGTGCAACCAGCAGAAAGGTGCATCTTCTGACTCATTCTGGTGTCAGACCGTACGTTTGCACGATATGCGGCCGTAGCTTCACGCAACGTCCAGCCCTCTGTGTTCACTGGAAGAAGAGACACCCGGACGCCACGGAATCCCCGCCATCCGTGTCCATAACGAACATTATCAATAGCATAACGCGAAACAACGTCAAAGTAAAAGACGACGCGAGATCGACGCAGCATTTAACTCAGAAGAGTAAAATCAACGCTGGCGAATTAATGGTTCCACGTAAAACACCAGGCATTCTCCAACGAAGAATCGTGTTTCGAGCGTCGAAAAATCGCAAGCGTAAAACCGATAAACGCCTAGTCTCGTGCGACGCTCAAATAGAAAAGCTCTCGTCCGAGCACTCGAGTTTACAAGAAGAAAAGTTGTTCACCAACGAGAGATTGTTATCGAGACACTCAGCGAATCGAAGAACGCTATTAAACAACGAAGAAAACAATTGCTCGTCCGAGTTACAAAATAAGGAGAAGAACACAGCGCAACGAGACGATCTTTACAAGAAACGTCACGACGGTACTTACACCTGTGACATTTGCCAGTCGGTGTTCGAGCAGAAAAGCAAAATCCTGCGTCACATCACCAGCAAGCACAGCTTCCATCGACCCTTCAAGTGCGCAACCTGCGACAAAACGTTCAAGTACAAGTGCGACTTGAAGGCTCACAGACTGGTTCACCAGGAGGTGGACACGAGCCTGTTGCACTGCTGCGACAAGTGCGACTATCGTACCAAAACGAAGAACAATTTGAAGTCCCATTACATCAGGCGACACACGGACGATTACAAGTTCGCTTGCGAGCACTGCgggaaacgtttcaaaatggAGTGGGACTTGAAGTTCCATATCGGCACCCACGGCAGCTCCCAGCACATGTGTGACATCTGCGGGAAGTTCTACACGAGCAACTATTCCCTGTACAAGCACAGGAAAGTGGCCCACTTGAACGAGTACAAGTTCCAGTGCAGCGTCTGCAACAAGAGGCTCCTGACGCAGGAAAATCTGGGCAATCACATGCAGCAGCACAGCAGAACGTACGAGTGCAAGGAATGCGGTAAGGTGTTCGCTTCCAAGAGATATTTAGCGACGCACATGACCACCCATACAGGCGTAAAACCGTACACCTGCCATATCTGCAAGAAGAACTTTCGTACGTCCACCATGAGGAACACGCATCTACTGACTCACTCGGCGGAGAGACCACACATCTGCGATCTCTGTGGACACTCGTTcaagagaaaatattacatGATAGAACATCGAAGGAAACATCCGGACGCCCACCTGTCTTCGCCACCTATGCCCCTTGGGAAGAACAAGAGTATCGTTGATTCGAACGTGGACATCGCGGCTGGACTTCAAGCGGAGGTTTCTTCTTAA
- Protein Sequence
- MLKRVSQTPKKRTVKKRVLVKTSPKTATPATKRSPTNTATKKPKAEASQREESENSEETVKLEQIYCDICKVTIYAKNYKRHMMKHNNSNSFQCELCSRKYKHKRTLTRHKLTIHGEALLHNCQYCDFTTVHSSYLQVHIMRKHTISFPFPCGKCDRKFRIKADFMKHMVTHDGEPCICDVCGTKVANKISLYFHKNHNHTVKDARYPCPICKKRLQTQKNLDSHVQQHDRKYICEECGMQLTRKTALRKHIRTHTGEKSYSCHICFKAFASATSRKVHLLTHSGVRPYVCTICGRSFTQRPALCVHWKKRHPDATESPPSVSITNIINSITRNNVKVKDDARSTQHLTQKSKINAGELMVPRKTPGILQRRIVFRASKNRKRKTDKRLVSCDAQIEKLSSEHSSLQEEKLFTNERLLSRHSANRRTLLNNEENNCSSELQNKEKNTAQRDDLYKKRHDGTYTCDICQSVFEQKSKILRHITSKHSFHRPFKCATCDKTFKYKCDLKAHRLVHQEVDTSLLHCCDKCDYRTKTKNNLKSHYIRRHTDDYKFACEHCGKRFKMEWDLKFHIGTHGSSQHMCDICGKFYTSNYSLYKHRKVAHLNEYKFQCSVCNKRLLTQENLGNHMQQHSRTYECKECGKVFASKRYLATHMTTHTGVKPYTCHICKKNFRTSTMRNTHLLTHSAERPHICDLCGHSFKRKYYMIEHRRKHPDAHLSSPPMPLGKNKSIVDSNVDIAAGLQAEVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -