Cgig003049.1
Basic Information
- Insect
- Colletes gigas
- Gene Symbol
- -
- Assembly
- GCA_013123115.1
- Location
- WUUM01000002.1:2752464-2757862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.055 4 7.9 2.4 1 23 382 404 382 404 0.97 2 18 0.0019 0.14 12.5 2.3 2 23 439 460 438 460 0.98 3 18 0.0032 0.23 11.8 1.0 1 23 568 590 568 590 0.92 4 18 0.0019 0.13 12.5 0.4 2 23 594 615 593 615 0.96 5 18 5.4e-05 0.004 17.4 1.2 1 23 685 707 685 707 0.96 6 18 0.00037 0.027 14.7 0.5 1 21 713 733 713 737 0.92 7 18 0.0071 0.52 10.7 3.9 2 23 816 837 815 837 0.95 8 18 0.00014 0.0099 16.1 5.4 1 23 893 915 893 915 0.97 9 18 0.00028 0.02 15.1 0.7 1 20 920 939 920 941 0.94 10 18 0.046 3.4 8.1 0.3 2 23 952 973 952 973 0.97 11 18 2.8e-05 0.0021 18.3 0.6 2 23 1012 1033 1011 1033 0.97 12 18 2.6e-05 0.0019 18.4 1.6 1 23 1038 1060 1038 1060 0.95 13 18 0.00014 0.01 16.0 2.9 1 23 1066 1088 1066 1088 0.98 14 18 4.5e-06 0.00033 20.8 0.4 1 23 1104 1126 1104 1126 0.95 15 18 3.7e-07 2.7e-05 24.2 0.6 1 23 1132 1154 1132 1154 0.99 16 18 4e-05 0.0029 17.8 0.2 1 23 1160 1182 1160 1182 0.97 17 18 0.00015 0.011 16.0 4.1 1 23 1188 1210 1188 1210 0.96 18 18 0.011 0.76 10.2 0.4 1 20 1216 1235 1216 1237 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAATGCGTCCGATTCACCACAAAACGTAGAGGATAGCATCGTGGCGACGGTAGAAATATGCCGCGTTTGCCTTCTCGGGAACCTGGTGATGCGAGACTTGTTTCTAGAAACCGAGGTCGCCTCTCTTTCGGCGAAAGCAATGAGCTTCGCCAACGTTAAGATGCTACCTGGGGATGGTTTACCGACACGTGTATGTTGCATATGTGCGGATAAACTCGAGTCCGCGTACGAGTTCAAACTGCAAGTGGAACAAGCCGATACAGTTCTCAGAGAACGATACGTCACTATGAATATGAAGGAAGAGTTGTTCTTCAACGAGGTTGAAGTGCATCTCGAGTCGGGGGACCAAAACGGGGATATTGGAGAGATGCACATGGAACACGATTATCAATCTACCGTGGAAACTCTAGATTCAATGTCCAGAGAAGAGAAATCCCTTCTGAAGAATCAATTATCTTTACTGCAAGTGGGAAAGTTAGACGATCAAGAATCGTCTATGAgagAGCAGGATAATGGTCCGGTAATGGAAGAAGCGATTGACCAAGtgataatttcgaaacaaGGGCAAGAAAATTGCCCTAGTCAGGATGAAGAGAACGTCAAGCCTGTTACCGATATGCCTCGTAGCGAAGCAACATTGAAATACACGAGTAGCACTAGAAACTGCATAGAGAGTATTCCGACGATAGAGCACGATTATATATTGCACCACGAATATATATTAGGGGACGAGAACCACCAGGAGCAGGAGGAGCAGCGACAGCATCAGTTAATTTCTGAAGAAACATTTCCGCGCGACGATTGCGCGGAATATGTGAATTTGCTGGTTAAAGCTGCCGACGCGACGAACcaagaggaagaggaggacgCGATCGCGGATGTGGCTGAGGACGCGACCGTGGACGAAGATGAagaggaaataaaaaagtcGGATCTTAAGAAAATTAACGTTAAGATAGAACAAGATAGCGAATGTCAAAATGAAGCGAGAAGAAGCAAACGTAACCAGATTCGACGAAACGTCGAGTCGACGCGGGACTCCGACGAGGagaattatttcgagaatTTGAATCTGAGCTCGCGATTAAAGAAGGCTCAAGCTTCTGATACATCGGACCGGATCTTCTTCATGTGCTACCTCTGCgacaaagaatttttatcgaagaacGTTCTGAGAGAGCACATGCATTCGCACGAGGAGGTCAGGAGAGCGTTgtcgttaaaaaaaagtcCGGAGAAACCGCAGAAACCTGTCGGCAATGTCGATAAATCGCCTCCGTCCGGGAAGAGGTTGAACAAATGTCCCCATTGCGGCAAacaatacatatacataatcTCGTTTAGCAAGCATTTGAAGAAAcacgagagagagaaagacgaGACGAAGGATCAACCGATGCCGTTGgaaatttcgtttcacgaGGACGAGCACAGTTTGGATCTCGACGATTATGTGATCAAGCAGGATTTCGATACGGAGTATCGGAAAAGAGCTAGGAAAAACGATGATGCGAATGGGACGAAATCGAAGCTGGAGAGTGACGAGATGGGGGAACATCAGATGGACGAGGACGGGGAGAACGAGGAATtgggaaacgagaaaaaaacgGAGGACGTAGATGGGGAGCATAATAACTCGAAGAGAACCAGAGAACGTGAGGTACGGGGTGTTCGCACAGAAATGTTTGCATGCGAGAAATGCTCGGAAAAGTTCTATACTAGGCGTGGTTTACGGAAGCATGAGGTTTTGCACGCCATCCTTAAATGTAGCGTATGCGAGGAAGAGTTCGACTCGCTGGAGAAACTGAGGAACCATCGTGCAAAGCACGTGCTCGAAGGTGTGTTGACTGAACAAGATTTGGAGGAAGATGCAGATTGCTCGGTAAATAATGAATCGGATAGTTATAAAATTGAGGGTAAAGAGAGGGAAGAGGGGGACCAAGAGAAACAAGAGGGAGAGGAAGTAGACACGTTGGAGGCGGAGAGTgcatcgaagaaaaattgcagAAATACGGAGTCACATACGGGGACCGACTATCGTTGCAAGGTGTGTTATCAGCGATTCGCCAGGAAGGATCTGTTGCAGAGGCACGCCGAGCAACACGAACGCGTTAAATCCTACAGATGTACACAATGTGATAAAACGTTCGGGAACGAGCTTACTCTGCGAAACCATTTGATAGCCACTAATCATAAAACCTTCGTTCACGGGCAGGAGTACGATCCCAATAAACGCATCAAACGTGTCGCCGCGAGAGCAGCGCAGAAGATcatagataaaattaaaaccgaGGACGGTTTGGAGGATTacgacgaggaggaggagaacAAGTTGCTCAACCGTAACGCCGCCCATACGGATGGGAATTACGGTCGAAGTAAACGTGACAGTTCCGCGCAAAAGAAACACATTTACAAGAAGGACCTGGAGTGCATGAGTTGCAACAAAAAGTGCAGTTCGAAGCAATCGTTGTCGAAACACATGGAACAGCACGTGAAGGTCGAGAAAGCGGTCAAGTCGGAGAAGCAACGACAGCCATCGTTGAAGAAGGACCGACAAAGAGCATGCATGAACGAGGGAATGGATGCAAACGAGACCATCAAGGACGACGATTACGACTCGGACTTCGAGAGCGGCCTGGATTGGCCGATGGATCATCACGAGTGCACGAAGTGCAAAAAACGTTACAGCACGAAGAAATCGTTGTTACGGCATCAGCTGTTGCACGAGGAGCCGAACTTTGAATGCGACATTTGCAATGTTAAATTTTACCGTAAGGATAAGCTGAAAGCTCATTACGACAAGTGCTCGGAAAAGAATCCGGACCAAGTGAGAAAATGTAACATTTGCGGCGACAGTTTCGAGAACAACGAGATTCTGCGGGAGCACAGAGCGAAACACGTCACCGAGGGCATCCTCACAGAGGAAGACTTGAGAGACATCGAACCACGGCCGGAGGAGAAGAAACCGGGCGAGAAAATCGGTAGAAAGAGGAGGACGGACATCGTCGGTTTGGAATGTACAGAGTGTAACAAACAATACACGTCGCGGAAAGGGCTTCTGCGTCACATTCAAGTGCACGAAGGGAAAAAGTACCTTTGCGACATATGCCCGAAGAAATTCTACAGAAGGGAACATTTGAAGATACACGTGGCCAAGCATAACATGATAAAACCGTACAAATGTACACGCTGCACGAAACGTTTCATCAAGGAGGAGCAACTGACCAATCATCTGTCGAAGCACGACCGTACCTTCAAGAAGAACAAAGAAACGGACAGCTCAAAGAGATTCCTTTGCGAGATctgttcgaaaagtttcacgcAATCGACGACGTTGATAGCCCATCTGAGGGCCCACAACGGTATCAAGCCGTACGTGTGCGAGGTCTGTTCGCGACCGTTCACGACGAACGCGTACCTAAAAATGCACATGAGGACGCACACCCAAGAACGACCGTACATTTGTCAGTACTGTTCGCGCGCGTTCGCCAGAGCCGACACGCTCGCCAATCATTTGACGTCTCACACTGGCGAAGCCAAGTACCACTGTAAGTACTGCCCGAAGAACTTCCGTCGTCTGAAGTCCCTCAAGGAGCACGTTTTCATCCACACTGGTCAAAGGCCTTACGCTTGCCCTACCTGCGACCGACGGTTCAACAACAACGGGAGCCGCTACGCTCACAGCAAAAGGTGCAAGCAGAACTTTGTCCAAAATCAGAATCGTGGCCAACCGTTGGCGCAGGTGCAGGCAGTGCAAAACCAACAGAGGGTACTGCAACAGGCGGCGCTTGGCCAAGGGCAGCTGGTTAAAACGCAAAACATTAAAACCATCACGATCACCAGACAGCCCGAACCTGTTTCCAGCCAGCAGGTCTCGCAACATCAGGAAATAATAATGCCACTGATCTTTCCACTGACTGTCACCGTCGCCGACATTAGCGAGGAGGTCATCCTGCCCGAGGGAGCCAAACTGTACACGACGACTTAA
- Protein Sequence
- MDAVEINASDSPQNVEDSIVATVEICRVCLLGNLVMRDLFLETEVASLSAKAMSFANVKMLPGDGLPTRVCCICADKLESAYEFKLQVEQADTVLRERYVTMNMKEELFFNEVEVHLESGDQNGDIGEMHMEHDYQSTVETLDSMSREEKSLLKNQLSLLQVGKLDDQESSMREQDNGPVMEEAIDQVIISKQGQENCPSQDEENVKPVTDMPRSEATLKYTSSTRNCIESIPTIEHDYILHHEYILGDENHQEQEEQRQHQLISEETFPRDDCAEYVNLLVKAADATNQEEEEDAIADVAEDATVDEDEEEIKKSDLKKINVKIEQDSECQNEARRSKRNQIRRNVESTRDSDEENYFENLNLSSRLKKAQASDTSDRIFFMCYLCDKEFLSKNVLREHMHSHEEVRRALSLKKSPEKPQKPVGNVDKSPPSGKRLNKCPHCGKQYIYIISFSKHLKKHEREKDETKDQPMPLEISFHEDEHSLDLDDYVIKQDFDTEYRKRARKNDDANGTKSKLESDEMGEHQMDEDGENEELGNEKKTEDVDGEHNNSKRTREREVRGVRTEMFACEKCSEKFYTRRGLRKHEVLHAILKCSVCEEEFDSLEKLRNHRAKHVLEGVLTEQDLEEDADCSVNNESDSYKIEGKEREEGDQEKQEGEEVDTLEAESASKKNCRNTESHTGTDYRCKVCYQRFARKDLLQRHAEQHERVKSYRCTQCDKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDEEEENKLLNRNAAHTDGNYGRSKRDSSAQKKHIYKKDLECMSCNKKCSSKQSLSKHMEQHVKVEKAVKSEKQRQPSLKKDRQRACMNEGMDANETIKDDDYDSDFESGLDWPMDHHECTKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRGQPLAQVQAVQNQQRVLQQAALGQGQLVKTQNIKTITITRQPEPVSSQQVSQHQEIIMPLIFPLTVTVADISEEVILPEGAKLYTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00360357;
- 90% Identity
- iTF_00360357;
- 80% Identity
- -