Cgig007423.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colletes gigas
Gene Symbol
Trerf1
Assembly
GCA_013123115.1
Location
WUUM01000012.1:7748275-8124687[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.8 4.8e+03 -2.4 0.2 29 42 1136 1149 1134 1150 0.88
2 2 9.7e-11 8e-08 32.1 0.0 2 46 1302 1346 1301 1346 0.96

Sequence Information

Coding Sequence
ATGACAGCCATCAACTCGGGTCCGGTCGGGGAAGTGGGCGGCGTCAGGCTGCCGCTGCAGTCATTACATGGGTACGGATCTGTGTTCATGTACTCGGCGTCGACGAGTCCCGGGGGTGGGGGTGGTCAGGGTGGCGGAGGCGGAGGTGAAGTCACCCTCCGCCTCCGCGAACCCGAGGACATTCCCGAAGAAGTTCTTGCACGCCTCGAGGATACCGCCACCCTCTCCATCTCCCTTCAAGGCGATGCAGTTCTGAGGCTAGGGGCGGCTGGCACAGGCAACGGAACTTTAGAGTTGTTCGATAGTGAGAGCGGGCCGGACCTCACGCTATCACCTCAGACCTTCACGTCAACGGCAGAGGCCTTCATCAATGACAATAGTGATAGTCTTGGTGTTCCAGGAGACAACGATACGGGTAGCAGCGAGGAGTCGAGACCTGGTGGAGGAGATCCTGGAAAGTTGGGCGTGAAGAAACCAAGACCGAAGGCTTCGTCGCCCAACAGACAGGGACCACAACAATGCCAGGTCTGCGGGAAGGTGTTCAACAACGCATCGGCGCTCACGAAGCACAAGCTGACGCACAGCGACGAGAGGAAATACGTGTGCACGATGTGCGGCAAGGCGTTCAAGCGGCAGGACCACTTGAACGGACACATGCTGACGCATCGAAACAAGAAGCCGTACGAATGCAAAGCGGAAGGATGCGGCAAGTCGTATTGCGACGCGAGGAGTCTCAGAAGGCACACGGAAAACCATCATGCCGGCAGCAAGGTGAACGAAAGCGTTAGTCCTAGCAGTCCCACGACCGGTCCTCATACTCCGAACACGCCAGGAAGCAATCCCAGCACTCCCAGCACGCCTGGCGCAACATCGACGCCGAATGGCCACGGACATCCGGCCCTGAAGCAACTGCTCGCCACGGAACCCACGCAGACGCAGCAGCAAAAGagTGCCACGTCTCCCGGCGCCAGCAACGATGGCCTCACGAAACAGCAGCTGGAGCTCATTCAGCAGATCATGCAACAAacgcaacagcagcagcagcaacaacagcaacaaacATCCgcgcaacagcaacagcagcaacgTAGTTCGTCGACGACAGTCACAGCTCAGATTCAAAAAACGCAAAAACCGTCCATCAAGTCCACAACATCGTCCAGCAGCGTGTCGAACAATTCTGGAAGTTCGAATGCAACCAGCAACGCGAGATCGAGCCCAAAGCCTAAAGTGTGGAGTCACGTGCAGcaacaacagcagcaggcTCAGCAACAGgtgcaacagcagcagcaacagcagcaaccCCAACAGCAGCACCAACAACAACAACCACAAGCTAATTCGCCAGGAAGCGGAAACGTAGGGAAAAGTAGTCCATCGCCGGGAAATTCGGCATCCCCTGGCACTGTTACAGCAAACAAGTCGCAGACCGAACCAAAACCAGTCGAGTGCAATTTGTGCCATcggaaattcaaaaatataccaGCTCTCAATGGCCACATGCGACTCCATGGTGGTTACTTCAAGAAGGATGCCGAGAATAAGAAAAGCGAGAAGAAGGAGGTGGTCGGGCCGCCCTTGCAAACCGCGTCTGTCAGCGTCAGAGCACttatcgaggaaaaaattatcCAAAAGAGGACTACTGcaGCAGACACGAGCACGAATCAACAGCCACGCACAAACGCCACTGTGTTCACCACGCAGGCAGACAGCGGGTCGCAGGTCGTTGGAAAAACGAACTTCGCGGTACCAGCACCGCCGCCATTGGCCTCCGCGGAGAAGGTCCGCAGACTCTCGGATGGCGAACATTTCCGACAACCGAACGTCACCGTTGGGGGTCATGCAACCGTGCAGAAACAACTGCAGGAAGCACAGACCCAGGCACAGGCGCAGGCGCTGGCCGACATGATTTTGAAGGGCACTACTAAAATGGCTGTGAAGAGGACGACATCCGATCCCGGGCAGAGATTGCACTTGACGTACCAGACGTCGGTTCAATCGGCGACCAatcagcaacaacagcagcaaaaTAACCAGCCTCAATCTCAACCCGCAGTCACAGACAGTTTCTCGATGACAGGTTACTCCGAGGACGGCGGGTACTTTAGTCCAAGCCTTCAAGACGAAGTGTTCCAGCAGGTCACCGCAGTTCCTGACAGCGTTCTGCTTCACGCTACTCAATTGGACTCTCTACAGTTTCAGACGGCGAGCTTGCTCCAGGAGCAAACCACCGAACAACTGCAGGACATCACTCTGGAGGAACGATACTCGTCTCAGCACACCGTGAACCCAGACCTCCAGGCGTTGGTGAACTCGCCATTACCCGACTCTTTGGCCGAGTTCAGTACATACGGCGCACAATACACGGAAAGTCCGCACACCCTGCCCACCCAGTCCCCGCTGCCATCGCCTCTGACCAGACACGACAGTCCAAGTTTCACATATCCGACGCCACCAGCCAGCCAAGAGGGCCTCCTGACCGGGAGTCTGCCGTTGCTGAGTCCGCAAGAGGACCCGGAGAGCGTGAGGCAGGTCTCGTCGCCGCTCTCCGCAGCTTTCTACACGTCCACCATGTCCTCCGCGGCAGCGGTGGAGGAGGCTCTCAGCGAAGTGTTGCCAGGGGAATCCGACGCTGACGCCGACCTCTACGGATCGGGTTCGCCCAACCCTCACTCGCCACTGCCAAGCCCTTTGTCGGCGACACCGGCACCGTCGCCGTTGTCCTCCCTGCCGCCGTCCTCCGTCTCGTCGCCAGGACCGGTGTCCTTCACGGGCACCAGTTTCCCCGTGTCGCCTCACCACGCTCTGCAGAGCCAGATGATGCCAAACTCGGAGGACCCGTTGCTCTCGTCTACGCCGAAGGACTTCACCACGGCCAGCCGCAGACGGTTCGAGTTTCAGTCGTACAAGTTCATCACCAGCCAGAACCTGGTGGACTTCGGCCTGGGGAACGGCAGCCTGGCCGGGATCGTCGTCGACAACAATGGCGAGTTCAAGCTGATACAGACCGCGGGGCTGCAGAAGACGAACGTCCTCGTTCAGACCGGCTCGCTGAGCCCGGCGTTGACCTTCAAGAAGGAGATGCGCCTGGCGACGCCCAAGGTGGAGCCCGTCACCGTGAACCTCGGCCTGAACGTGCAGACGAACCACCAGTACAACGCTGGACAGTTCAACCAGCAGCAGGTCGTCAATCCCGCCAAGTTTCTCATACAGACCAACACGGCCAAGAACGGTAACATGAGACAGAAGACGTCCAGCCTGCCGATCCCGGTGGAGCAGATCAAGGAGGAACTCCTGGACGAGGACGTGTTCCTCAATCCCAGCAGCATACCAACCGGTAGCCCTGTACGACACTGTAGGAAAAGGCCTAGAATGGACGGCGGCCTCTACGCCAGCGCGTCTCATTCGTACCCGTCGAGGCTGAGAAAGGCCTGCGATCGACACTGGGACAGCAGCTACACGCCGCCGCCGATTTTGGACCCGTCCCGTCCTGGGCCCGGACTGTACGCCAGGTTACATCAGTACGAGAGAGACTCCGACTTCAGCTCGGACGACTCGCAGGGAAACGACGGACCACCGCCCAGGATCAACATCGGGACGAGGTACCAGGCGACGATACCGCCGGTGGGCAGCGACGGTGACAGAGGAAAGGGAGAACCCGAGGCTGACCACTTGCTCTGGGATCCTGGTATAAATAACGTGCTGACCGACAGCGAACTGGAGATGTATTTGCAATTTGCATGCTGCGCTGCGGTGCCAGGCGGGGGGAGGAACAAAGAGTACGCGTTGCATCTGCTGCACATGTGCAGAGGAAACATTCATGAGGCGATGCTGAAGCTGATGAGACCAACGCCCATGCTGCCAATGGAACATCCGCTGCTCAGTTACGAGTGCCAGGAATCGGACAGGTGGACGTCGCAGGAAATGGACGTGTTCTATCAAGGTCTTCTCAAGTACAACAAGGACTTCTCCGCGATCTCGCGCGACGTGAGTGGCAAAACCGCGAAACAGTGCGTGCAATTCTATTACCTATGGAAGAGGCTCTGCCCGGACGAGTACAAGAGACTGCGTGTCCGTCATGGAAAACCAAAGATTAAGACAGAAAGCAAAGATTGCAAGGACACGAGGGAACTTCGAGATGCTATCGCATCCGTGACGGAGATGGACTTCGGTGAAGACAAATCGATCCTCCATCGTACTCTGTTACAGACGAACGAGAGAGAAAACTCGGCTACTCTGACCACCAGCGACGGGGAGCTGAGATTATTCGCATACGACTGCCCAGATAGCTTTAGCGGAAGTGTAACAGTAACGATGGCCGGAAGCACCCAAACCGCCCAAACCGGCAATACCGGCCACGCCACAGTCAACACCAACTCACAAACTCACACTAGTTCTGAGCAACAACTACCCGTGCCCACCCCACTTCACTACCCCTGCAAGATTTGCGGGAAAGTTTTCAACAAAGTGAAAAGCAGAAGCGCGCACATGAAATCTCACAGGCCAGTGCCCTCGCCCGATTCAACGGGTCAGGAATCTAAACGGCCTGCACAGCAGCAGCAATCCAAAGCTCAACAGTCCCAGCAGCAGTCCAGCCAGCAACAACGTCAGCAAccacaacaacaacaacagcaacaacaacaacaacagaagcagcaacaacaacaacagttGCAGTCGCAACAGTCGAGCAGCGTTTCGCCGCAGGCGACGGACTTCGCCAATCAGCAGCCACTGCCTCCAAGCAACGGCGACCCAGGCGCTCAGAGCACCGCGCATTTATGGCACAACCCGACGCGGCTCAGGCCACCATAG
Protein Sequence
MTAINSGPVGEVGGVRLPLQSLHGYGSVFMYSASTSPGGGGGQGGGGGGEVTLRLREPEDIPEEVLARLEDTATLSISLQGDAVLRLGAAGTGNGTLELFDSESGPDLTLSPQTFTSTAEAFINDNSDSLGVPGDNDTGSSEESRPGGGDPGKLGVKKPRPKASSPNRQGPQQCQVCGKVFNNASALTKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHAGSKVNESVSPSSPTTGPHTPNTPGSNPSTPSTPGATSTPNGHGHPALKQLLATEPTQTQQQKSATSPGASNDGLTKQQLELIQQIMQQTQQQQQQQQQQTSAQQQQQQRSSSTTVTAQIQKTQKPSIKSTTSSSSVSNNSGSSNATSNARSSPKPKVWSHVQQQQQQAQQQVQQQQQQQQPQQQHQQQQPQANSPGSGNVGKSSPSPGNSASPGTVTANKSQTEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKSEKKEVVGPPLQTASVSVRALIEEKIIQKRTTAADTSTNQQPRTNATVFTTQADSGSQVVGKTNFAVPAPPPLASAEKVRRLSDGEHFRQPNVTVGGHATVQKQLQEAQTQAQAQALADMILKGTTKMAVKRTTSDPGQRLHLTYQTSVQSATNQQQQQQNNQPQSQPAVTDSFSMTGYSEDGGYFSPSLQDEVFQQVTAVPDSVLLHATQLDSLQFQTASLLQEQTTEQLQDITLEERYSSQHTVNPDLQALVNSPLPDSLAEFSTYGAQYTESPHTLPTQSPLPSPLTRHDSPSFTYPTPPASQEGLLTGSLPLLSPQEDPESVRQVSSPLSAAFYTSTMSSAAAVEEALSEVLPGESDADADLYGSGSPNPHSPLPSPLSATPAPSPLSSLPPSSVSSPGPVSFTGTSFPVSPHHALQSQMMPNSEDPLLSSTPKDFTTASRRRFEFQSYKFITSQNLVDFGLGNGSLAGIVVDNNGEFKLIQTAGLQKTNVLVQTGSLSPALTFKKEMRLATPKVEPVTVNLGLNVQTNHQYNAGQFNQQQVVNPAKFLIQTNTAKNGNMRQKTSSLPIPVEQIKEELLDEDVFLNPSSIPTGSPVRHCRKRPRMDGGLYASASHSYPSRLRKACDRHWDSSYTPPPILDPSRPGPGLYARLHQYERDSDFSSDDSQGNDGPPPRINIGTRYQATIPPVGSDGDRGKGEPEADHLLWDPGINNVLTDSELEMYLQFACCAAVPGGGRNKEYALHLLHMCRGNIHEAMLKLMRPTPMLPMEHPLLSYECQESDRWTSQEMDVFYQGLLKYNKDFSAISRDVSGKTAKQCVQFYYLWKRLCPDEYKRLRVRHGKPKIKTESKDCKDTRELRDAIASVTEMDFGEDKSILHRTLLQTNERENSATLTTSDGELRLFAYDCPDSFSGSVTVTMAGSTQTAQTGNTGHATVNTNSQTHTSSEQQLPVPTPLHYPCKICGKVFNKVKSRSAHMKSHRPVPSPDSTGQESKRPAQQQQSKAQQSQQQSSQQQRQQPQQQQQQQQQQQKQQQQQQLQSQQSSSVSPQATDFANQQPLPPSNGDPGAQSTAHLWHNPTRLRPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01122371;
90% Identity
iTF_00361150;
80% Identity
iTF_00361150;