Basic Information

Insect: Colletes collaris
Gene Symbol: -
Assembly: GCA_030068185.1
Location: JASGYR010000321.1:711136-717635[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.17 20 6.7 1.3 1 23 737 759 737 759 0.95

2 12 0.0025 0.3 12.4 0.1 2 23 817 838 816 838 0.97

3 12 3.7 4.4e+02 2.5 2.2 3 21 994 1012 993 1013 0.96

4 12 0.023 2.8 9.4 0.5 3 23 1034 1054 1032 1054 0.96

5 12 3.5 4.2e+02 2.5 0.2 1 11 1065 1075 1065 1082 0.84

6 12 0.18 22 6.6 0.3 3 20 1124 1141 1123 1143 0.92

7 12 0.0025 0.3 12.4 0.2 2 23 1165 1187 1164 1187 0.96

8 12 0.033 3.9 8.9 0.6 1 23 1236 1258 1236 1258 0.93

9 12 3.5 4.3e+02 2.5 0.3 3 23 1280 1300 1275 1300 0.77

10 12 9 1.1e+03 1.2 4.9 1 23 1534 1556 1534 1556 0.97

11 12 0.3 36 5.9 0.1 3 23 1956 1979 1954 1979 0.92

12 12 0.034 4 8.9 0.1 2 23 1982 2003 1981 2003 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.17	20	6.7	1.3	1	23	737	759	737	759	0.95
2	12	0.0025	0.3	12.4	0.1	2	23	817	838	816	838	0.97
3	12	3.7	4.4e+02	2.5	2.2	3	21	994	1012	993	1013	0.96
4	12	0.023	2.8	9.4	0.5	3	23	1034	1054	1032	1054	0.96
5	12	3.5	4.2e+02	2.5	0.2	1	11	1065	1075	1065	1082	0.84
6	12	0.18	22	6.6	0.3	3	20	1124	1141	1123	1143	0.92
7	12	0.0025	0.3	12.4	0.2	2	23	1165	1187	1164	1187	0.96
8	12	0.033	3.9	8.9	0.6	1	23	1236	1258	1236	1258	0.93
9	12	3.5	4.3e+02	2.5	0.3	3	23	1280	1300	1275	1300	0.77
10	12	9	1.1e+03	1.2	4.9	1	23	1534	1556	1534	1556	0.97
11	12	0.3	36	5.9	0.1	3	23	1956	1979	1954	1979	0.92
12	12	0.034	4	8.9	0.1	2	23	1982	2003	1981	2003	0.96

Sequence Information

Coding Sequence: atgacaGATTCTATTGAAAAAGCATTGTATATGAATTCTGATGAAGAAATATTCGATACATATTTTCTTGGCTTTGAATCTTCTAATAAGAATAAAGTAAGCATGACATTGACACCAAAAAAGCAAAGATCTAACGATATGGACATGCTTATAAATGCAGCAGGACATAAATCTTGTGTTCAAAGAACACGATCCAAGTTGATTGCAAACAAGAGTCAATTAACGAATAAAAACAGTATTGTAGATTCATTATACAAGTTATGTAAGCCAGTATCTATAAGACTTACAAAATTATCCGAGTCAGAAATAATGAAAGCCTGTAATCCAAGTTTGTCTAAAAAATGTTTAAGGGAAATTCATAATAAACATAAACATGAATGGAAGAAGAAAGAGAATGTCTTGAGAGCAAGAAGAAAAAATACTTGCCATAATCAGATGTCAAATCCATGTGGCTCGAATAATAATGTTCGGGCTCAAATTGTAGCAGTTAATAAGAGACAGACATTTAGTAGACGTAAACGACATACGACGAATATATTGAAAAGCATTAGACAGCCACAGATAAGACTACATAAAATAGACAGGGTGATTGATAAAATAACAAAGTCACTTGCAAACACAACTTCGAATAAAGTATTCATTGCAAATGATCAGACACAACAGTTATCATTATGTAACAATAGGGATACAAATCCTAAAAACGAGACAACCGAAAGTTCAATACTCAACCCATGTTTATGCAAAGACACGCAAACCAGTCATCAGATCCAGGACAATAGTAATAAAGTGCACAAGATTAATGATAAGCAGACATTGAAACGTAAACCTGAGATTGTACACGATATACATTATAATAGATGTAGCAATGAAAATGTAAATAAGGACGTATTTAACGTTACTCTAAGAAGAACAAAAAGATTCAAGTTAAATTCGTTAAAGGAGAATTTGGACACTTTTGTATCCACTGAAGAGCATGAATCGATTAGCAAATCACAGGAAATTATCAACAAGTTACAGACGGAATCGAACCAAAAAGAGAATGTTCCCAACaaatcaaataactttttaagcaATCAAGCGAAGAACATTTCGGAGGATACATTCCAAGAAAATGTTCACAATGTTGCGGTTGAAAGAATGGAGGGAGATTGTGTTTCCAGGTATGTGCCTTTAGAGATAGATTTTGTACATACCACAGAAAATAATGTTTATTCAAAATTGCAAGAAAACAATACTGTAAATGAGGAAGTACCAATACTAGAAAGCAATGAAATCCAAAACCAAGAGTATCAACTATGTACTTCGTACAAAGatttaatacaaaaatacaaattattcaCAGACTTAAAGGTCTGTttgataaaatttgattttctggaaacttcgtttaataataaatactcAGTCACAGAAATTGAGcaattaatgaaaaaatatattaagtcTTTAGTTTTTAAGAATTCTAATGTTGTACATACAACTGAACGACCTTTATTGTTTGACTCGATCGAGTTTGAAGATTTTATCATTAAATCTGAAAAACCTGATGATTTTAGTGTAACTGAAAGTATTGCACCTGTACCAGTTAGTGCAAATAATTGTCAGAATGAAAGTGGCTCGATCACCGAagattcaaatttaaataataagatGGAAGCACAGCAGGATAGAAGTCCAAAAAATCAAAGTGTTTCCAAAAATCATACAACATCCTGCAAAGATGTTCTTTCCGAAGAAGAATATTCTACAAACGCATCGTCTTCTCCAGCAAATATTTCTACCAAAGGACCTGAAACTTCTACTCTGATCGAAGATGCTGTTTATACAACAACATCAGAAGGTGTATctaataaatattcttttacaAAATCCGCTAGCAAGATATTAAGTTCTTGGACAGAAAAATTACAGAACACATGGTCTCGCAATGataagtttgaaaaattacttaGCACTGTTAGACTTTTAGAAAATACAGATGTCAATAAACCGAAATTTGGCATTGGCAAAATTAGCGCTTTTAGAGATGATAGCTTTATTTCAGGAAATAAGATCTCTCGATCTAAATTGCATTCTAAAAGTATGAGTTCCGTGAATTACGAAATGAATCTGAACGAAAAAACTAattccactaaaatttttccaagaaaGTGCAGGGAATTTATAGACAAGGCAGATAATGATAAAAACAATATATTTTCTggtatgtataaatgcatattttgcgataaaaattttaaaaagtatcCTGTTCTGCAACAACATCTATCTGAACATACACAAAAACAGAAAACCATTTCCGTTGGAAAACcaaaagaaacagaattattGCACTCTTCTAAAATTACTCCGCAAGTGGTATCAGCGAttagtaaaaataaacataagaAAAGGTTACAGTGGAGGAAACTTAAATCTTTGAAGGAGACGAACGAGTGTGAGGATACTGTTTGTACTATTTGTTTGCAGAAATTTGCATCAAGAGCTGCATTGGCAGCTCACATTTATACGCATACAGAGAGCGAACTGCAAGAAGCGTATAAAGTTCAGAAAGAAAAACTGGAAAAATTACAAGAAAACCAAGAGGATAAAAATGGTAGAGAATCAGCTATCGCGAAAGAGAAGAAAACTAGAAACAACGCAAATGGTAGCATTAAAAGATGCTCAAAAATTGAGAACAAAAAGGATAAGAATTGTTCAGAATTGTCGGTTAAATATGTGCAAGATAGTTCGGTAACGGCACATTCGGAGAATAAAATTCTCGAGCCAGAAAAGCTAACTGATAAGGATGAAACGAGCGAACCGATCatcttaattgaaaatgaatcgaGAACAGTTCAGACGTTTCCTCTGCAAAATAAGTCGGAGAAagagaaaattaataaagtgGCTAACGTTAAGAAGAAATTCACAGTATGCCAATGTCACAACAAATCAGAAGTTAGTTTAAGTTATTTGCAGATCGAAGTAATTCTTCTTTGTCATGTTTGCAGAGTATTATTTCGAACGCTGGAGTGTTTTGAGACACATTATCGTCTTCCCGAATACGTAGCTTGTAATAAGAACTGTGTGGACAGTGGCCGATCTCCAAACCTGTTCTGTGCTAGTTGCGGTATGTCTTGCAGTTCGGCCGAAGACGTGCGCAATCATCTAGAAACACACTTTCGTTTTAAGCAAAATTGTACGATGGACTTTCGATGCAACATTTGCAAGGTTATGTTCATCGGAGTTGGATCCCTTTTTTATACCCATTGGTCAAAACATGCAAAGGATCCATTTTGGATAGCCAGCGAACATTCGTTCCCAAAAGCTTCGGTGATACATTTGAAATCAAAGAAAGATACGTTCATTCAAGTGGCAGAAAACATCTGTTGCAAATGTAGGTTACCTTTTATTACCGAAAGTGATTTAAAGGAACATGAACTGGTATGCAAGATACTTAACTCGATTACGAATACGTGTACTGTACAGAAGCAACCAACGTTACGCTTGATTTGTAGTTTATGCGGTGGTATTTATTTTGATAAGGTAGAATTATATAAACACATGAGAACCAAACACAAGTTTGGCTTCACGCCTCAATTCATATGTCTGACTGTCGCGATGTCAAAGAAAATATACATTTGCAGTATTTGTATGGAAGCAAACAACAATATGAACAATTTCGAAGAACATTGGGTTGTACATAATACGAATCATCCATATTTCCTTTGTACGTATTGCGAAACGAATTTTAATACTTTGGACTCTTACCTAGAACACGCCAAAGGACACGAATCCAAAATGAAAGAAGACATGCTCTCTTGTAGAATAAACTATCGGAAATGCGAATTTATTTGCGAACCCTGTATTATTGGTTTCGGGTCTAAAAAAAGCTTGACCGATCACCAGCAAGCTCATAAAGTATCGCGTCAGTCAATGAAACCTATGAATAACGAGACATTAGATCAGAGAAGTTCTGCATCGACTCCAGAAACAAACAATGTTTCTAATGAAAAGGAAGAAGAGAAATCTAAGAAGAACGAAGTAAACGTAGTTGCTGAGAAATCCAGCAGAGATATCGATAAGGAAAGATTAGTTAATATATTGGAAGGAAACGAAGAGGATTCCGAGAATGAACTAATAATAGACTTGACGGACAATTCAACAGAAGTTTGTGACAAATTGACGAGGAAAgacaaaacgaaagaaaaacaaattgcGTCTACTCCTGCATTAAACGTGTTATCCGATCCGCGAACATGTATGATTTCTAAAGATACCGAAGTTGGTGCATTAGTTAAAAACACAGTAAAGCAGAAACCTTTGCAGAATGTTGTAACAACTTCAGCAGTCTCCGACCAAGTAACCCAGAGCTTAACAAACGTGACAGGTGTTTTACCTTCCAAAGATACAGTAACTTCAACATCTTCACAGAACATTGCTTCGAATCAGAAAACATCCGAAAGTAATGCTCAAGTAAACGATACCAATAATTTACAATCTATTACACCGGTGAACAAAGATAGTTCGTTAACGACGGATGCTCCCTTAAAACCAAAGCAAGGTCTCTTACGCGTGAAAACTATCGCGGAACTTACAGAGAAGACAAATCCTATATATTCGTGTTACTCTTGTAATTGTTCTTTTAAATGTTCCGACGATATTATGCAACATTTGATCATGCACGCGACCCAAAGTCAACAAATGGAACAGCAGAAAGCTAGGAAAAGCAATCCAATTCCTTTGCAAATAGTAAACGAACCAGGCGGAACCAGTAACATGGTTAAAATTGCATCGACGCATCAAAATCGTCCAGTTTATCAAATACCAGTAACCAGCGCCCTGGAATCTACAAAATCTCACAACGCAACAATAATCGAGAACCAACAGTTGCAATTGCAATCGAACACGAATCGAAAGGAATATTCGCACTCTTCTGTGCAAACTTTGCCACCGGCGTATCATAAAAACTTACCACCTTGTAACATTGTCCAAAGGATGGTCGTACCGCGGTCTTCGATCCAGAAGAAAGGAGTTACCATAAGAGCAGTAACACAAATACCGCCTTCGGCAACTTGTTCCGACATTCAATATCAAAACAGTCAGAAGCACCAAGAAGCATCCAGAAGCAAAACCGATTTAAACTCGACTACCTTGGCATTGCCACAGTTGCAAGCAGTGTCTATGATCACTTCAAATAATAGTAAATACCAAAACAAATGCCAAGTCCGTCCTGAATACAATGCAAACAATGTAACAAGAGTGTTTCTACATAAATCACAATTTCCTCGCAAAGAACAGCAAATGAAGAACGAGGCGGTAGTAAGTAAACGCTACGTTGGCAATCCGGTAACAACGAACAAAGTTAATTTCACGAGTAACGGGCAAACCTTGAAACAAGGTCTACTGCAACCTACTCTGAATCAGTCAAGAGCAAACACAGTTACCACAACAGTTTTACACGAAAGTCCCAGCTTTGCTACAAACGATCCGAATAACTACAATCAAATGCCTGTACAAAGCCAACAAATGGTACGTGATCGATCGGCAGTGGAAAATACTACCACTTCTCAACAGTATAAAAATTCCACGTCTGGCGGAGTGTTGATAGTTCAAACTGCACCTTCTATATCAAATATATCAACGATCAATGTATTGCAGCAACAAGTACAACAacatcaacaacaacaacaacaaacatATCAACCAGTGGTTTATAATAATTCTATAGTAACTATGGATCCATACATGCAACAATCGCAGAGCGTAATTAATTATACCGGATCGAACAATTACGAGGTGGTGTCTAATCGGTATGTGGCTCCAACTGACGAAGGCATTGTAATCTATGACGCTAGGGAACAACTTTCAAGGCAGTTGATTTGTTCTTATTGCCCTACACctgtttcctttgtttctaaaGAATCGTTTAATCTACATATAAATCAGTACCATAAAATTGTATGCGATATTTGTGGTGTGACTTTGTATAGCTTCAACGAACTGAATATTCATAGATCTAAACATCAGTTTATATAA
Protein Sequence: MTDSIEKALYMNSDEEIFDTYFLGFESSNKNKVSMTLTPKKQRSNDMDMLINAAGHKSCVQRTRSKLIANKSQLTNKNSIVDSLYKLCKPVSIRLTKLSESEIMKACNPSLSKKCLREIHNKHKHEWKKKENVLRARRKNTCHNQMSNPCGSNNNVRAQIVAVNKRQTFSRRKRHTTNILKSIRQPQIRLHKIDRVIDKITKSLANTTSNKVFIANDQTQQLSLCNNRDTNPKNETTESSILNPCLCKDTQTSHQIQDNSNKVHKINDKQTLKRKPEIVHDIHYNRCSNENVNKDVFNVTLRRTKRFKLNSLKENLDTFVSTEEHESISKSQEIINKLQTESNQKENVPNKSNNFLSNQAKNISEDTFQENVHNVAVERMEGDCVSRYVPLEIDFVHTTENNVYSKLQENNTVNEEVPILESNEIQNQEYQLCTSYKDLIQKYKLFTDLKVCLIKFDFLETSFNNKYSVTEIEQLMKKYIKSLVFKNSNVVHTTERPLLFDSIEFEDFIIKSEKPDDFSVTESIAPVPVSANNCQNESGSITEDSNLNNKMEAQQDRSPKNQSVSKNHTTSCKDVLSEEEYSTNASSSPANISTKGPETSTLIEDAVYTTTSEGVSNKYSFTKSASKILSSWTEKLQNTWSRNDKFEKLLSTVRLLENTDVNKPKFGIGKISAFRDDSFISGNKISRSKLHSKSMSSVNYEMNLNEKTNSTKIFPRKCREFIDKADNDKNNIFSGMYKCIFCDKNFKKYPVLQQHLSEHTQKQKTISVGKPKETELLHSSKITPQVVSAISKNKHKKRLQWRKLKSLKETNECEDTVCTICLQKFASRAALAAHIYTHTESELQEAYKVQKEKLEKLQENQEDKNGRESAIAKEKKTRNNANGSIKRCSKIENKKDKNCSELSVKYVQDSSVTAHSENKILEPEKLTDKDETSEPIILIENESRTVQTFPLQNKSEKEKINKVANVKKKFTVCQCHNKSEVSLSYLQIEVILLCHVCRVLFRTLECFETHYRLPEYVACNKNCVDSGRSPNLFCASCGMSCSSAEDVRNHLETHFRFKQNCTMDFRCNICKVMFIGVGSLFYTHWSKHAKDPFWIASEHSFPKASVIHLKSKKDTFIQVAENICCKCRLPFITESDLKEHELVCKILNSITNTCTVQKQPTLRLICSLCGGIYFDKVELYKHMRTKHKFGFTPQFICLTVAMSKKIYICSICMEANNNMNNFEEHWVVHNTNHPYFLCTYCETNFNTLDSYLEHAKGHESKMKEDMLSCRINYRKCEFICEPCIIGFGSKKSLTDHQQAHKVSRQSMKPMNNETLDQRSSASTPETNNVSNEKEEEKSKKNEVNVVAEKSSRDIDKERLVNILEGNEEDSENELIIDLTDNSTEVCDKLTRKDKTKEKQIASTPALNVLSDPRTCMISKDTEVGALVKNTVKQKPLQNVVTTSAVSDQVTQSLTNVTGVLPSKDTVTSTSSQNIASNQKTSESNAQVNDTNNLQSITPVNKDSSLTTDAPLKPKQGLLRVKTIAELTEKTNPIYSCYSCNCSFKCSDDIMQHLIMHATQSQQMEQQKARKSNPIPLQIVNEPGGTSNMVKIASTHQNRPVYQIPVTSALESTKSHNATIIENQQLQLQSNTNRKEYSHSSVQTLPPAYHKNLPPCNIVQRMVVPRSSIQKKGVTIRAVTQIPPSATCSDIQYQNSQKHQEASRSKTDLNSTTLALPQLQAVSMITSNNSKYQNKCQVRPEYNANNVTRVFLHKSQFPRKEQQMKNEAVVSKRYVGNPVTTNKVNFTSNGQTLKQGLLQPTLNQSRANTVTTTVLHESPSFATNDPNNYNQMPVQSQQMVRDRSAVENTTTSQQYKNSTSGGVLIVQTAPSISNISTINVLQQQVQQHQQQQQQTYQPVVYNNSIVTMDPYMQQSQSVINYTGSNNYEVVSNRYVAPTDEGIVIYDAREQLSRQLICSYCPTPVSFVSKESFNLHINQYHKIVCDICGVTLYSFNELNIHRSKHQFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361227;
90% Identity: iTF_00361227;
80% Identity: -