Basic Information

Insect: Colletes collaris
Gene Symbol: -
Assembly: GCA_030068185.1
Location: JASGYR010000078.1:19108208-19113476[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 8.9 1.1e+03 1.2 0.1 2 20 176 194 175 195 0.90

2 23 0.27 32 6.0 2.5 2 21 204 223 203 224 0.93

3 23 0.0017 0.2 13.0 5.0 1 23 239 262 239 262 0.96

4 23 0.29 34 5.9 2.1 2 23 577 598 576 598 0.81

5 23 0.21 25 6.4 1.2 5 23 605 624 596 624 0.83

6 23 0.0049 0.58 11.5 2.6 2 23 631 652 630 652 0.96

7 23 0.31 37 5.8 2.6 1 21 679 699 679 700 0.95

8 23 0.014 1.7 10.1 1.6 1 22 809 830 809 830 0.95

9 23 0.00013 0.016 16.4 0.2 2 23 838 860 837 860 0.92

10 23 0.0037 0.44 11.9 3.8 1 23 870 893 870 893 0.95

11 23 1.8 2.2e+02 3.4 0.2 2 19 915 932 914 935 0.89

12 23 0.5 59 5.2 1.5 1 23 942 965 942 965 0.81

13 23 0.0029 0.35 12.2 7.3 1 23 976 999 976 999 0.91

14 23 0.0059 0.71 11.2 0.1 2 20 1030 1048 1029 1050 0.93

15 23 2 2.4e+02 3.3 1.5 1 19 1057 1075 1057 1075 0.82

16 23 0.0037 0.44 11.9 0.1 2 20 1151 1169 1150 1171 0.94

17 23 0.0091 1.1 10.7 1.4 1 23 1178 1200 1178 1200 0.96

18 23 0.64 77 4.8 4.2 2 23 1211 1233 1209 1233 0.90

19 23 8.7e-06 0.001 20.1 0.7 1 21 1285 1305 1285 1306 0.94

20 23 0.0027 0.32 12.3 0.4 1 23 1313 1335 1313 1335 0.97

21 23 3.6 4.3e+02 2.5 6.9 1 23 1344 1367 1344 1367 0.93

22 23 0.038 4.5 8.7 0.3 1 23 1479 1502 1479 1502 0.97

23 23 0.61 73 4.9 0.2 2 23 1523 1545 1522 1545 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	8.9	1.1e+03	1.2	0.1	2	20	176	194	175	195	0.90
2	23	0.27	32	6.0	2.5	2	21	204	223	203	224	0.93
3	23	0.0017	0.2	13.0	5.0	1	23	239	262	239	262	0.96
4	23	0.29	34	5.9	2.1	2	23	577	598	576	598	0.81
5	23	0.21	25	6.4	1.2	5	23	605	624	596	624	0.83
6	23	0.0049	0.58	11.5	2.6	2	23	631	652	630	652	0.96
7	23	0.31	37	5.8	2.6	1	21	679	699	679	700	0.95
8	23	0.014	1.7	10.1	1.6	1	22	809	830	809	830	0.95
9	23	0.00013	0.016	16.4	0.2	2	23	838	860	837	860	0.92
10	23	0.0037	0.44	11.9	3.8	1	23	870	893	870	893	0.95
11	23	1.8	2.2e+02	3.4	0.2	2	19	915	932	914	935	0.89
12	23	0.5	59	5.2	1.5	1	23	942	965	942	965	0.81
13	23	0.0029	0.35	12.2	7.3	1	23	976	999	976	999	0.91
14	23	0.0059	0.71	11.2	0.1	2	20	1030	1048	1029	1050	0.93
15	23	2	2.4e+02	3.3	1.5	1	19	1057	1075	1057	1075	0.82
16	23	0.0037	0.44	11.9	0.1	2	20	1151	1169	1150	1171	0.94
17	23	0.0091	1.1	10.7	1.4	1	23	1178	1200	1178	1200	0.96
18	23	0.64	77	4.8	4.2	2	23	1211	1233	1209	1233	0.90
19	23	8.7e-06	0.001	20.1	0.7	1	21	1285	1305	1285	1306	0.94
20	23	0.0027	0.32	12.3	0.4	1	23	1313	1335	1313	1335	0.97
21	23	3.6	4.3e+02	2.5	6.9	1	23	1344	1367	1344	1367	0.93
22	23	0.038	4.5	8.7	0.3	1	23	1479	1502	1479	1502	0.97
23	23	0.61	73	4.9	0.2	2	23	1523	1545	1522	1545	0.95

Sequence Information

Coding Sequence: ATGCATCTTGAACTATACGCCTTTTTTCATGATAATTATGTTGTTTGTACTATTACAAACATTGTAAGGCATACATTAGAAGCAAAATTATTAATCGTAATAGTGCGAGGCGCGGAACTTGTTAAAGTTAAAAAGGAATGGAGAGAACGTTTTGTtctgggcctgctagtggactcgttGGTATTAAACAACCTAGCAAGCTTTGCTTTGGACGCCGTGTCGGGACATTCGATGtATTTTCAACATGGGAAAAAGATTAAAGAAGAGGCACCTGACTATAATACTTACGATCACGATGATTCGTCAGTTAGTAACACACGCGCAGTGACTAAAATTCAGTCAACAGTATTAGAAGATAAATTTTCTAATTCGACAAACAATAAGGAAAATGAAGACACAAAATCGGATCTGAATGAAGAAACACGGAAATCTAAACGTGTAGGTAAACATTTTTCACcagaggaagaggaagagagCGATGATAGTATACCTTTTAAGCGCAACAAAAAATTAGAACACTACATAGAGTGTGATGTGTGTTTTTTACATTTTGAGAGTGAACTTGACATGAAAATTCACAGGGTACACTATAATGCATCTCTTAAGTGTACCTGTGATATTTGCAAAGCAGTATTCCAATCAGATCACATGTTAAGTCGACACAGAAAATACTGTATAAAGCCGCAAGATTTTAAGGAACCCTTCCGTAAAAGATATGTTTGCCACCTTTGCGGGAGAAAATTTCCAGAGAAATACAGACTACAGGCTCATATATGTCATTTGCACGAAAACGAAGAATATAATGCATCGATGAAAACTATTAACTACCACATAACAAATTCTGGCACTAGTAAAATTAAACACGATGTACTTAAGGAAAACACTAACAATCAGGTAGCAAACATTGACAAAGCAGGGAGGCTGAAGAGTCTGAGCGACTCACCAGTAAAAAGGTTGAGGCAAACCACTCTTGTAGAATtcctttctttctttaataagAAACAAAAAGAGTGCATTAACTCGGAGAAAGTTTCTTCCACAAAGAAGACTGATGTTATTCATAGACAAGATAAAATAAGCGAAATAAATTCATCATCTACCGAAGTAAGCATGCCTAGAAAAATTGAAAGTTCTACCTGTATTCCGTCTGTAACGATTCATCCCACCGATAAAACACCATTTGTACAAATTCACGTGAATACCTACACTATGGAGGCCTTGTTAAATGATGAAATAAAAACTGAACCAGAAGATTCCTACAGTCCTACTACTTCGCACAATACATTTTACAATCTAAGACGAATAGGAAGGGGAGATAGTAACCGGTCATCGGCTACATTAGATAGCGGACTTGGCGCGGAATCATTTAACAATGAAAGATTTATTGTTACACGCAAACGAAAACGGATGAATGTACTATCGTACGAACAAAAGCTGAAATCAAAATTCAAATGCAAGGAGTGTGTAATTTATTTAGAGAGGTGCGATCAAATTCTGAATGGTTTCGATAAATCTGAATGTATGCTTAACGTCGACacgataaaaatagaaaaagatagTGAAAATGCTGAATCAACGAGCCCAAGTAAACTAATATTGAAGACTTTGGAAGTGCCACTAGTGAGAGTGAAGGAACCCGTTGAAATTGAAAGTGACGAATCGCTAACATACGTAGAAGAACCAGACGTAACCAATGTTGATATCGGATCTAGCCGTAACGATGTATTACCAtgcaaaatttgtaaaaaatcttTTCCTTCAGAGGTCATGCGTAAACACTTAGAGGTATGTCACACGGTGTACATGTCAAGTATATGTAACGCCCGTTACACGACCAAAGGTAAATTGTGGAATCATTACCTAAATCAACACATAGTTTTTAAACGAAAGGAATGCTGCATTTGCTACGAACAATTTAGTACATCTATGACGCTAAAGTCACACATGCTTTTACATTGTCTCAAAGCCATACGATCGGAAAATGACAGTCTGCCGATCGGTCGTAAAATAAAGTGTAACGCGTTTAAGAAACAATATCGGTGTAATCCGTGTGGTAAACGATTTTGGTTGAACTCGTGTTTGAATCATCATCAGAAGGTGTGTTACTGGATGAAAAAAGCTAGGAAGGGAGAACAGCAAGTACCTCGCGTGAAAACCTCTTCGTCTTTTGTGGAAGAAGAAAACACAGGCGAATGTGAAAGTAGTTCGCTTGTCATTGGCAATACGACACCCACAATAAATTCGTTTCAAAATACTTGTAGCCCTTCTTCTCTTTCCGCATCTCAAACAAAGACACCCAATCTCAAGACTCAAGACTCAAACCCATTACAGACACGATCAACTGCAAATCCAAAAAAGTTAATCAATAGTATCGTATGCGTAAAGGGTTATCAAGTTGATGTAACTGGCATGGACAGAATAAAGTTTCCCTGTTTAGTATGCGACAAACAATTCCAAACGTTTCAGAACTTGTGTTTACACGAACGTACCTATCGCAAACCACCCGATAGTCCGTGTAACGTTTGCGGTACTGTATTTACTACTAAGAGACTTTTACAACTTCACACGCTTGCGACTCACACACACGCCTGTTCGTcgagatacaaatatttttgcaaGTTTTGCAATCAGGGTTTTATTAGAAAGTCGAATGTTCAAGTTCACGAACGTCACTTCCATATTACACAGAACGTTGTACCATCCACATTGGAGAACGATGATTCTGTTTGGAACATAAATACTGAGTGCCGTATCTGCAATTTGATGTTCGAATCTTACGATCGTTTCATCGAGCATAACAAATACTATTATAGAGGTCAAGTTTTTACATGCACATTTTGCGGCGAATCGTTCGAAGGAATGTACATACTTCATAATCACAACAAATCGGTACACTATACAGAGGCTATGCGTAATTCGTACACTTACAAATGCAATATTTGTAACGAGGGCTTTAAGCAGAAGTCTCATTTCCACGCGCACAAGTTCCACGTTCATTTAGAGGATATGAAAACCAGCGAGGATCACAGTTACGCGTTGAGAGTCAACAATGTTGACACGCACATAAATGTACCATTAACGGTGTCTTCTTGCAAGATCTGTTCCGCGGAATTTACCAATAAAACGGATCTACGGATACACGAAATGGAATATTCCGTCGATGGTGACTTTCAGTGTGCCAAATGCGACAGGAAGTGTCGTACCGTTGACATTCTTAGCAAGCATGACAGTTTAACCCATAATAATTGTCTCATCGGCAATTATTATAAATGCCGTTTTTGCGAAGAGGTGTTAACGACAAGCGTATCGTTGTCATGCCATGAAAAACATTTTCACGCGAGCATCTCGTCTTCTTTGGAGAGCAGCCAGAACGCGTATGGTCCATTAGATGCGAATCATGAAGCTGGTGACAAGGctgtcgacaaatttcacgaCAGATCGAGCAACATTAAGTGTTCGACTTGCGGTATGAGATTCAACGACGAGGCAAAGTTACAGGATCATTTATTAGAGTACTCTGATGTTGGTGCGTATGCGTGTGATATTTGTCAGCGAAAGTTTACGGAGTTACATCGATTGGAAGTGCATAGAGTGAAACATTCAAAGTTAAGTTATCATTTGTCCAAATGTCACTGCCCTATATGCCACGAGGGATTCCCGGATGCTCCTAGTGTCCGAATGCACACGTTACACTTTCATGGGTATGAAACATTTTCAAGTGCCCTTATTAGATACGACGATAAGAAGGACGACGATAATCAAGAGAGCCAGTTTAATCCTCTTATAGACGAACCGGATAAATTATCTAATCCTTCCATTTTGTCCTCTACAAATCAATCGCAAGGAGGCTCTTTTAAATGTTCCGAGTGTGACGTAGCATTCAATTCTCAAAGTAATTTACGTAAACATAGATCACGGTTCGTGAATACCGGTAACTACGTATGCGAATATTGTGGCCGTAAGTTTCCTTGGTTGACATTATTTAAGGCTCATGTAAATAAACACTCTGCCGCGGATGGTTATTTGAAGCATAAATGTTTTCATTGCAACGAACAATTTCGGTATCCTTTTTCAAGGTACTCGCACATTATACACATTCACGGCAAGGATAAAGTAAACGTTCAAACCACTGACACGAATAGATCGGATGATAATAGCACCAAGTTATCGTTAGATCGTTCCAAAGTTGTTTTTGATACTCCTGTTACCGAGCTGACCGACGATTTCGAATATGACCAGCTTTCACTTCCCTCTGCAACATGCTCGCCTGAAGTTTGCGACAATAGAATCGAACCGGACGTTATAACGAATTCCGTAGACGAGTCTAACGGCGAACAGGAAGTATCGTCTTCCACGGTAGACAATATGCTAAACGATCCGTACACGGTTCAAGATAACGACGGTTCAAAGAATGTCGAAGAGAAGATAAACTATTATACATGTCCTATATGCAATCTATTGTATCCGACTTTGAAGAGATTCGAGTTGCATTTAAAGGTGACGCATAGAAGCTTATTTCAGAAAATAGTAAACGATACATTACCATCCACGAAAGCGAACGTCATTACTTGCATGGTCTGTGACTCTACTTTTGCCGAAGAATGGAAGTTCATGGAACACGTACGGAACACGCATCCATCCCTTTTATCGACTGGTCATAGTATGGCGAAGGAAGTTAACCCTCTCCCTACTGCACCAGATGATTCCGATGCATTAGAAATCGTTTGGGAAAAGGAATCATCTGCTGTTACAGAACACCATCCGAAAATTAAAGGACCTAACAATTCAGACGTCCAGGCACTATACGAAAGTTACTTTGGTCCTATAGTCACTTATGTTGGAAGTTTAGCCCCATCAAATGTATCCAAGCTAACTCCCGATGTTTGTAAGCTGAAAGTCAAGTCGTTTGCGAAATTGAATTAA
Protein Sequence: MHLELYAFFHDNYVVCTITNIVRHTLEAKLLIVIVRGAELVKVKKEWRERFVLGLLVDSLVLNNLASFALDAVSGHSMYFQHGKKIKEEAPDYNTYDHDDSSVSNTRAVTKIQSTVLEDKFSNSTNNKENEDTKSDLNEETRKSKRVGKHFSPEEEEESDDSIPFKRNKKLEHYIECDVCFLHFESELDMKIHRVHYNASLKCTCDICKAVFQSDHMLSRHRKYCIKPQDFKEPFRKRYVCHLCGRKFPEKYRLQAHICHLHENEEYNASMKTINYHITNSGTSKIKHDVLKENTNNQVANIDKAGRLKSLSDSPVKRLRQTTLVEFLSFFNKKQKECINSEKVSSTKKTDVIHRQDKISEINSSSTEVSMPRKIESSTCIPSVTIHPTDKTPFVQIHVNTYTMEALLNDEIKTEPEDSYSPTTSHNTFYNLRRIGRGDSNRSSATLDSGLGAESFNNERFIVTRKRKRMNVLSYEQKLKSKFKCKECVIYLERCDQILNGFDKSECMLNVDTIKIEKDSENAESTSPSKLILKTLEVPLVRVKEPVEIESDESLTYVEEPDVTNVDIGSSRNDVLPCKICKKSFPSEVMRKHLEVCHTVYMSSICNARYTTKGKLWNHYLNQHIVFKRKECCICYEQFSTSMTLKSHMLLHCLKAIRSENDSLPIGRKIKCNAFKKQYRCNPCGKRFWLNSCLNHHQKVCYWMKKARKGEQQVPRVKTSSSFVEEENTGECESSSLVIGNTTPTINSFQNTCSPSSLSASQTKTPNLKTQDSNPLQTRSTANPKKLINSIVCVKGYQVDVTGMDRIKFPCLVCDKQFQTFQNLCLHERTYRKPPDSPCNVCGTVFTTKRLLQLHTLATHTHACSSRYKYFCKFCNQGFIRKSNVQVHERHFHITQNVVPSTLENDDSVWNINTECRICNLMFESYDRFIEHNKYYYRGQVFTCTFCGESFEGMYILHNHNKSVHYTEAMRNSYTYKCNICNEGFKQKSHFHAHKFHVHLEDMKTSEDHSYALRVNNVDTHINVPLTVSSCKICSAEFTNKTDLRIHEMEYSVDGDFQCAKCDRKCRTVDILSKHDSLTHNNCLIGNYYKCRFCEEVLTTSVSLSCHEKHFHASISSSLESSQNAYGPLDANHEAGDKAVDKFHDRSSNIKCSTCGMRFNDEAKLQDHLLEYSDVGAYACDICQRKFTELHRLEVHRVKHSKLSYHLSKCHCPICHEGFPDAPSVRMHTLHFHGYETFSSALIRYDDKKDDDNQESQFNPLIDEPDKLSNPSILSSTNQSQGGSFKCSECDVAFNSQSNLRKHRSRFVNTGNYVCEYCGRKFPWLTLFKAHVNKHSAADGYLKHKCFHCNEQFRYPFSRYSHIIHIHGKDKVNVQTTDTNRSDDNSTKLSLDRSKVVFDTPVTELTDDFEYDQLSLPSATCSPEVCDNRIEPDVITNSVDESNGEQEVSSSTVDNMLNDPYTVQDNDGSKNVEEKINYYTCPICNLLYPTLKRFELHLKVTHRSLFQKIVNDTLPSTKANVITCMVCDSTFAEEWKFMEHVRNTHPSLLSTGHSMAKEVNPLPTAPDDSDALEIVWEKESSAVTEHHPKIKGPNNSDVQALYESYFGPIVTYVGSLAPSNVSKLTPDVCKLKVKSFAKLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361151;
90% Identity: iTF_00361151;
80% Identity: -