Basic Information

Insect: Colletes collaris
Gene Symbol: -
Assembly: GCA_030068185.1
Location: JASGYR010000257.1:3353736-3362886[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.43 51 5.4 5.4 1 23 389 411 389 411 0.98

2 18 0.00041 0.049 14.9 0.7 2 19 447 464 446 468 0.89

3 18 3.8e-05 0.0046 18.1 4.2 1 23 474 496 474 496 0.98

4 18 1.1 1.4e+02 4.1 0.7 3 22 504 523 502 525 0.81

5 18 0.34 41 5.7 1.9 1 23 532 555 532 555 0.98

6 18 0.0001 0.012 16.8 0.7 1 23 559 581 559 581 0.97

7 18 0.0049 0.59 11.5 0.9 1 23 587 609 587 609 0.98

8 18 3.7e-05 0.0044 18.2 1.0 1 23 615 637 615 637 0.97

9 18 0.0031 0.37 12.1 0.1 1 17 642 658 642 659 0.90

10 18 2.1 2.6e+02 3.2 2.5 1 23 1186 1209 1186 1209 0.97

11 18 0.00011 0.014 16.6 0.5 1 23 1215 1237 1215 1237 0.98

12 18 0.062 7.4 8.0 0.9 1 23 1243 1265 1243 1265 0.97

13 18 4.2e-05 0.005 18.0 0.2 3 23 1273 1293 1271 1293 0.96

14 18 0.16 19 6.8 0.7 2 23 1300 1322 1299 1322 0.95

15 18 0.00077 0.093 14.0 2.4 1 23 1326 1348 1326 1348 0.98

16 18 0.057 6.8 8.1 0.9 1 23 1353 1375 1353 1375 0.98

17 18 5e-06 0.0006 20.9 0.4 1 23 1381 1403 1381 1403 0.98

18 18 0.0002 0.024 15.9 2.1 1 21 1408 1428 1408 1429 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.43	51	5.4	5.4	1	23	389	411	389	411	0.98
2	18	0.00041	0.049	14.9	0.7	2	19	447	464	446	468	0.89
3	18	3.8e-05	0.0046	18.1	4.2	1	23	474	496	474	496	0.98
4	18	1.1	1.4e+02	4.1	0.7	3	22	504	523	502	525	0.81
5	18	0.34	41	5.7	1.9	1	23	532	555	532	555	0.98
6	18	0.0001	0.012	16.8	0.7	1	23	559	581	559	581	0.97
7	18	0.0049	0.59	11.5	0.9	1	23	587	609	587	609	0.98
8	18	3.7e-05	0.0044	18.2	1.0	1	23	615	637	615	637	0.97
9	18	0.0031	0.37	12.1	0.1	1	17	642	658	642	659	0.90
10	18	2.1	2.6e+02	3.2	2.5	1	23	1186	1209	1186	1209	0.97
11	18	0.00011	0.014	16.6	0.5	1	23	1215	1237	1215	1237	0.98
12	18	0.062	7.4	8.0	0.9	1	23	1243	1265	1243	1265	0.97
13	18	4.2e-05	0.005	18.0	0.2	3	23	1273	1293	1271	1293	0.96
14	18	0.16	19	6.8	0.7	2	23	1300	1322	1299	1322	0.95
15	18	0.00077	0.093	14.0	2.4	1	23	1326	1348	1326	1348	0.98
16	18	0.057	6.8	8.1	0.9	1	23	1353	1375	1353	1375	0.98
17	18	5e-06	0.0006	20.9	0.4	1	23	1381	1403	1381	1403	0.98
18	18	0.0002	0.024	15.9	2.1	1	21	1408	1428	1408	1429	0.94

Sequence Information

Coding Sequence: ATGGAGCTAGGGGAGGGAGAGGCGCAAATTTGTCGACTTTGCGGTCAGTGCGAAAGAATATACATAGACGTGTTCGGCGAGGAAGGTACCAAGAGATTTTTAGGCCTGAAGATTCACACGAAAATCAACATTCTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAGTGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGCGTTACGCGATCGATACAATCTACCATCCTTAACAGAGACTGCTGATGTAAAGACTGAAGAAACAACGCCAAGCACATCGACAAACAATAATAACAACGACATGGATAAAAATCTTAATTCCCCGAACGAGGAGAATGCGAGAGAAACAGAGACACGCATTTCAAGAACTACAAAGAGTCAGAGAAACTTACGAAGTCAACAACAAGCAAAAATTAAcgaagaaattgaaaaagaacAAATTATTATGCAAAGCATGAACGACGAGAACGGAGATAATATGGATAGCCCCGAGACAACTCCCACACGGTGGCTTAGAAGTAGACAAAATACAGAGTCAACTTCCTCGAGTGAAAAAGCTACTGATCCTCCGATTGCAAATAGACTTAGAAGTCATAACAATGCTATGGAGATAACTGTTGGTCCACGCAATAATTCCATTGAGAGTATTGAGAAACAGATTGGAAAACAACAAGATCCACATACTATTCAAATTCCAACATCTGCTTTAAACAAGCTTCTCACCAGCGTGTCGAACTCACCGAACATAGAAGTGTCTGTCAAGGAATCCAGAAATCAAAGCAGCGACGTAGAAGATATCAGTTTCACTGTGGAATTATGTAAAAAGGAGAGCGACGACGTTGCCACCGTTCGAGCGCGAGTTTTTCCAGATCAGGGCTCATGTTTGGTAGACAAGGCTATCGTCGATCTTTTACAGAATCAGAGTTGCGTAGAAGTGAACAGTATAATAAATACTATCATCAGCACCAGCCTTAAGAACGGCAATTCGGCGAAGGCAAAAGATTCCATGGATTTTGAGCAGAAGTGGCAAATATCTCAAAATCCGGAGGAACTGTTCAAGATCGACGGGGAAGAGATACGCGTGGACGATAACGTGGAGCACATTGTCACAGACAATCAGAATGGTTACTCCTGCAAGCTGTGCCGTAAGTTCTATGAACGCAAAGACAAGTGTATGGTCCACGTGAAGACGCATCTCGGGATTAAACAGTACACTTGTATTTTGTGCAATGCCAAATTCGTTTGCAAATCCGATGTGATCAAACATATTCGATGCTCGCATACCAATCCCAGACCGATACAATGCCCAAAATGTCCAAAGAGGTTCAAATCGAAATTCTATCTGATGGAGCACGATAACGTGCACAAGGGCGTAAGACCATACTCTTGCACGGACTGCGGTCAGAGTTACCATCACAAAGTATCATTACAGATTCACATGAAGTCGCATTTACCTCCGCAGAATTTAGCCTGCGAGTATTGTAGCAAGATATTCCCGTATCGCACGAGACTGTTGTGTCACATCGGGAGCGTGCACTTAAAGAACCGTCGGAATTTTAAGTGTCGATTCTGTTACAATCTTTACTCGAGCCTCTCGGTTCTGAACGAGCACATCAAGACCCGTCACGCGACCACGTACACCTGCGAGGTGTGCAGCAAAACCTTCAAAGTCGCGTCCAAGTACAAGGCACACGTGCTGCAGCACTCGAACCCCAAGCCATTCGTGTGCAACATTTGCAACAATAGATACGCGTCGAAGACGTTCCTCAGCGAGCATCTATTGAAACACGAGGGATTGAGGAAGTACATATGCCAGAAGTGTGGCGCGAGATTCGCGCAGGCTAGTCATCTGGCCGCGCACCGGCACGTGCACGGCGAAAAGAAACACGCCTGCCCGGAATGCGGGCGGAAATTCAACAGGCGCGATAACATGAAAATAAAAGAGAATGATGGATTGCCACATATTGTTTGTATACGATGTATCGGTACATTGGAATTCTTGTGTGACTTTTACGAGACCTGCCACCTCACTCAAATGGAACTCTCGGAGGGCAGTAAAAATAAGATAGAAGAAAGCGATGCTGAATCTGACAAAGAGAATGCTTTTCCATCAATGTACGACgcgaaacgtaaaataaaagttCCATCGCCCAGCGGATCAAAAAGTACAAAACATGGTCTGGTTGTGAATAATGGATCGTACTACAgtacagaaacgaaagatgGAAGTAATAGTCTTTACCGCGTAGATAATAACGACCGTTCAAATAAAGTTCAGTCTGTCATGCAAATGACTGTACAAAAATGTACAAAAGGCCTAGCATTAGAAGAAAAAGGAAATGTTTCAAAGGGAACGATAATTCGCAACAGAAGAACGGAATCTCTGAATAGTACAGTAAGGTCCAGTCAGAACGCTAGTAATAGTATACAACAGCCTTTACGTCGCAAAAGGGGTAGGAAAAGTAAActagaaaaaatgaaagaagCCAGTGTATATTTGAGCCTAAAGAGGAAACTGGAAAAGCGTGCAGAGGATGAAAAGAACAAAGATAATCCGTATAAGAGGCACTATCTACATACAATCTGGATAAATAACAAATCTAACTTGACAAAGAATTCTGTGATATTATCTAAGCCCCAAGTTGAAAGAGTAGCGAAGGGAGAACTAGTAGTAAATACGTTGTCGAATGTGTTTCATAATGAAAATAGCAAAACTGTTACTATACCTGATGACAATACAGTTGAAATAGAAACTAATGTCAAAGACTCTGAAATAACTGAAGGCCCTATAAAGAAGAATGAAGACAACTCCATGAAAAGCAAAGCAATATCGGTTATCGTGAAGCAAGAAAAAGGAGAGACTGAGAGTGCATTTTCTCAGCAAACTAGAGAAATAGATCAACTTGTTTGGATTCCTAATGACGTGTTAATTCAGGAACAAGAAACTTTAATAGATTCTCCATTAAAGGAGGAAGTAAAACAAATTACAAACAAGAAAAGTAATTTCACAGCGGAGTATGATGATGCAGAGCATTCTAATGTTTCCACTATCACGGACCATAAGGATTTGAAGTCAGAAATATTCGAGGAACAGAATCGTGTAACCGTTATAAAATCCTTCCAGACCAACGGGAGCCCGATTTCAAAAAAAATGGAGGAAGTTAAAACGGAAGTATATCTTACAACGAACGCGACGAATCAGAGTATAAAAGATGATTCAGAATCTGATGACGCTGATCTATCGTTTATGCAACCACTCAGTCCTGATAGTAAATTCAGCAGGAACAGGAGCAAGGATAGATCATTCGCCAAGATCACTGAATTGATCAGCGACGAACAAAAAGAAGCTATCGAGACTTTCTACACGGTTGATATGTCGATTGTTAACCCGGTCGAAGTGCAGAAGAATTTGACGATAATTGATAAGAAGAATATACGCTGTAATATCTGTGGTACTTTTTACCTCAGAATGGACAAGTGTCAGGTACATATTTGGGGCCATTTGAAGATGAAGCCATATCAATGCAAAGCGTGTGACTTTTCCACGGTGACCGTCACCAACGTTCGTTGCCATATTAGAAAGAGTCATCTAAAAATCAAACCGTTCGAATGTCATCTTTGCGAAAGAAAATATGTAACTGCCGTTTTATTGGAGGAACATATTAATACTCATACGGGTGCCCGGCCATTTAAGTGTAAGCTTTGTGACTTCACAAGCGCAAGTCGACAAATGCTGAGTTACCACGGCGCCACTCATAAACCAAAAAAGgATATTAATTGTAAGATTTGCGACAAGGAATTTTATTCGAGAGGCAGACTACGAGCACACATGATCATACATAATAAAGACAAATTTGTCGTATGTAAACTATGCTCTGCTTATTTATCCAGTCAGGAGGCACTAAAGACACATCACAAAAACGTTCACTCGCAAGATTATGTGTGTAACGTATGTGGCAAACATGTTCAGTCGAGGAAAGCTTTGCACAATCATCAAAATGTTCATGCTGCTGCAAAATATAAATGTTCTTTGTGTCCAAATATGTACAAGAGTAGTCAGATCTTAAAAGAACATCTTTTGAAACACGAAGGTATCAGAAAGTACAAGTGCACTGTTTGTGAAAAATCATTTGGTCAACAATCTCATGTAGCTGCTCACATGGCGGTACATAGTAAAATTAGATTTCATTGTCCCGGGTGCGACAAACCTTTCAATCGTCATGATAACATGAAGATGCATACTAAACGGTGTCAATTGTTTCTCGCGAATCCGGATCTAAAGAATCGTAtagttaaaaaagaaagaaatatattcTTCAAGAAACCGACGGAACTGAACGAGGATTCAATGAGCGGGGATACGTCGAATTCCGCAACACATGTCGAAGATCAGAATGTAGAGCCATTAATGAAAACTGTAGATAAAAAAGAAGAGGTTGAAATGAATCTCTGCAAAATAGGACTGAATATCTCTTGCATAAAGTCCATGAATGAAACGTGGAGATGCGACGACGTGTATAAAGAAGCTGGAGAAATTACGGGATCCGCCGAGATCAATTTGATTCAAATTACAGGTGTCAATGATAATTTCATTCCAGAAAGCGAGAACTTAATAGTTCGTGAGACCATTTTGGGACCAGAAAGTTTTTAA
Protein Sequence: MELGEGEAQICRLCGQCERIYIDVFGEEGTKRFLGLKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQALRDRYNLPSLTETADVKTEETTPSTSTNNNNNDMDKNLNSPNEENARETETRISRTTKSQRNLRSQQQAKINEEIEKEQIIMQSMNDENGDNMDSPETTPTRWLRSRQNTESTSSSEKATDPPIANRLRSHNNAMEITVGPRNNSIESIEKQIGKQQDPHTIQIPTSALNKLLTSVSNSPNIEVSVKESRNQSSDVEDISFTVELCKKESDDVATVRARVFPDQGSCLVDKAIVDLLQNQSCVEVNSIINTIISTSLKNGNSAKAKDSMDFEQKWQISQNPEELFKIDGEEIRVDDNVEHIVTDNQNGYSCKLCRKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVIKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCSKIFPYRTRLLCHIGSVHLKNRRNFKCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCSKTFKVASKYKAHVLQHSNPKPFVCNICNNRYASKTFLSEHLLKHEGLRKYICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKIKENDGLPHIVCIRCIGTLEFLCDFYETCHLTQMELSEGSKNKIEESDAESDKENAFPSMYDAKRKIKVPSPSGSKSTKHGLVVNNGSYYSTETKDGSNSLYRVDNNDRSNKVQSVMQMTVQKCTKGLALEEKGNVSKGTIIRNRRTESLNSTVRSSQNASNSIQQPLRRKRGRKSKLEKMKEASVYLSLKRKLEKRAEDEKNKDNPYKRHYLHTIWINNKSNLTKNSVILSKPQVERVAKGELVVNTLSNVFHNENSKTVTIPDDNTVEIETNVKDSEITEGPIKKNEDNSMKSKAISVIVKQEKGETESAFSQQTREIDQLVWIPNDVLIQEQETLIDSPLKEEVKQITNKKSNFTAEYDDAEHSNVSTITDHKDLKSEIFEEQNRVTVIKSFQTNGSPISKKMEEVKTEVYLTTNATNQSIKDDSESDDADLSFMQPLSPDSKFSRNRSKDRSFAKITELISDEQKEAIETFYTVDMSIVNPVEVQKNLTIIDKKNIRCNICGTFYLRMDKCQVHIWGHLKMKPYQCKACDFSTVTVTNVRCHIRKSHLKIKPFECHLCERKYVTAVLLEEHINTHTGARPFKCKLCDFTSASRQMLSYHGATHKPKKDINCKICDKEFYSRGRLRAHMIIHNKDKFVVCKLCSAYLSSQEALKTHHKNVHSQDYVCNVCGKHVQSRKALHNHQNVHAAAKYKCSLCPNMYKSSQILKEHLLKHEGIRKYKCTVCEKSFGQQSHVAAHMAVHSKIRFHCPGCDKPFNRHDNMKMHTKRCQLFLANPDLKNRIVKKERNIFFKKPTELNEDSMSGDTSNSATHVEDQNVEPLMKTVDKKEEVEMNLCKIGLNISCIKSMNETWRCDDVYKEAGEITGSAEINLIQITGVNDNFIPESENLIVRETILGPESF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -