Ccol024962.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colletes collaris
Gene Symbol
-
Assembly
GCA_030068185.1
Location
JASGYR010000369.1:45953-48882[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.2 5e+02 2.3 0.6 3 20 286 303 284 305 0.87
2 16 0.00063 0.076 14.3 0.8 2 23 339 360 338 360 0.94
3 16 4.5 5.4e+02 2.2 5.5 2 23 402 424 401 424 0.96
4 16 0.0029 0.35 12.2 0.5 1 23 430 452 430 452 0.96
5 16 3.8e-06 0.00045 21.3 3.4 1 23 458 480 458 480 0.96
6 16 0.00017 0.02 16.1 1.9 1 23 489 511 489 511 0.97
7 16 2.5e-05 0.003 18.7 1.8 1 23 517 539 517 539 0.98
8 16 3.6e-06 0.00043 21.4 0.6 1 23 544 566 544 566 0.97
9 16 0.0068 0.81 11.1 4.2 1 23 573 595 573 595 0.99
10 16 0.00052 0.062 14.6 0.1 2 23 615 636 614 636 0.97
11 16 0.0013 0.15 13.4 0.3 2 23 644 666 643 666 0.95
12 16 0.009 1.1 10.7 0.5 1 23 672 694 672 694 0.97
13 16 0.00029 0.035 15.4 2.7 1 23 700 722 700 722 0.98
14 16 3e-07 3.5e-05 24.8 2.4 1 23 728 750 728 750 0.98
15 16 5.9e-06 0.00071 20.7 2.0 1 23 756 778 756 778 0.98
16 16 0.04 4.8 8.6 0.4 2 23 784 805 783 805 0.93

Sequence Information

Coding Sequence
ATGAAATCGAACGAAGAGTTGCATTTAAATTGTTATATATGTTCTCATCACATAGAGGATCATTATTACATAAGTAAAAGTGATCCTGTTATAATAGACCAACATGCTGTGCCTACATTATTTGAATCAGATGTTCTAACAAAGAAAGATTTAAGAAATATCTTGGATAGAGATGAAAAAACAGAAGTGACAAACAATGTTGTATTGTCATATTGTGATGTGGATACTGAGATAAACCAATATAGAGATATCAGTATTAGATTTCCAAATTTGTGTAGAATTTGTGGTGAGCCATCATTAGATGGTATAGAAATATTTACAGAGAAGGGCATAGAATTAAAGTTAAAAGATAAAATAAGTTTCCATCTACCAATAGTTGTTGATGTGGAAGATTTGATGCCACAAAAATTATGTATGAATTGCTATAATAAACTGGAAATTGCACATTCACTTGTTGTAACTTGTTTAAAAACAGATATGAAGTTgaaaagatttttaaatattaatgaagAAATGAACTATGACAATAAATATAATGCAATAGTGAAGGCATGTTCACTGGATATAGctaaagaaatttgttcaaaTGATGAAAATCAGACTACCTCTATTGAATTATCTTCTGATAAAGTTGATGAAATTGCAATGAATCAAGATAttacaacaaaattaaattacttaGAAAATATTGATACACAAAaaactaactttgcaaacaaTGTAAGGAAGGAAATGCAATCTGAATTAAATAACTTCATTGAATCATAcaacaaagaaaataaagaagacaATTCCATAAATAAAACAACAAATAATCCAAACAATGATGGAACAAATAATACTAATAAAATTGCATGTTTTCATTGTAAAGATTCGTTTAAAACAcaagaaatttttgaaaatcacaAAATGTTATGCGATGGAgaagaaataataatacaaaaacAAAAAGAGATTACTGAGATTAGTGATATTAACAATGAAGAAGAAATGACTTTTCACTTTGTTACAAAAACTTGTAACATTTGTGACAAAAGTTTTAATGATGAGAAACTTTTTGCTGAACATGAATTTTCACATTGTGAACATTATCAAGAAAAACAATGCCAAATTCCAGATAAGCTAAGTATAACCGAAGAACAGCAGAATATCTATGAACATTCACTTGCTATAAACTCTGCTGCAACAGTTGAAACTAATAAACAATGTGGACATTGTGAAtcaatttattgtataaaaaaagACTTGTTAAATCATATTGAGAAATGTCATGGTGGCCAGCTATtatttaaatgtattaaatGTAATAAAAGTTACGAAAAATGGTCTAGTTTAGATGTACACGAAGCCACTCACAGAATAGATAAACCTTATCTATGCGACTTATGCGGGAAGAGTTTTAAACACTCTAATAATTTAAGAGGTCACAAAAGAACTCATTTAGATGACACAAGAAAAAAACGACATGTTTGTGAAATTTGTGGAAATGCATTTAGATCTAGATTTCATTTGGGAGAGCACATGAACCAACACAATGGAAATAAACCTTACTCTTGTGAAAAATGTGGAAAAGCTTTTTACAAAAGAATACAACTAAGGCAACATAAACTGTCTCATGGTGTAAATAAACACATTTGTCCTATTTGTGGAGCAGCGTTTAATCGTAAAGGAAATATGAATACGCATCTTAAGCGGCATGATAATGGAGATGGCATATACACGTGCAGTGTTTGTGCATACAGATGTAAGTCAATGAGTGAACTGAAGTTACATAGGAAAAAACATACGGAAGAAGACATCATAGAAAGCATAAGGAAAAAGTGTACCGATAAAACAGTATGGCAATGTGAAGTCTGTAGCCGGATATTTTCGACGCGGGCAGTTTTATTGAATCACGAGCGCATACATAAAGGAGAGAAAATGAACGTTAAATGTAATATTTGTGGGAAACAGTTAGCCAATAAGAATTCCTTGATATATCATAACAAGTCTATACATTCTAAAGAAAGACCACACATGTGTCAATACTGTGGTGGAGCATTCGTGTCCAAAGAGTCGCGTCTTATACACGAAAGAATACACACTGGAGAACGCCCCTACATCTGTAAAATATGTAACATGGAATATAAATGCTCCAGTAATCTTAATCAACATATGAAAATCCATTCTGGCATTAAACCTCATAGATGTACATACTGTGATAAAAGTTTCACGCGTAAAGGGGCATTAAGAGTTCACGAAAGAATTCACACAGGAGAGAAACCATTTTCTTGCGATACATGTGGCAAAATGTTTTCACAAAAGAATGATATGTTGAAGCATACTAAAATGCATAAAGTAAAAACGATGCGTTGCGAACAGTGCGACGAAGTATTTATGAAAAGGAAAGATATCCTAAAACATGTCGCTTTCCACGAACAGGAAAATCCTATAGTTCAAGAATATGTGGAAGTGCGGCAACATATACAGCCCTACAATGTAAATATTACATGTTCAGAATTTGAATAA
Protein Sequence
MKSNEELHLNCYICSHHIEDHYYISKSDPVIIDQHAVPTLFESDVLTKKDLRNILDRDEKTEVTNNVVLSYCDVDTEINQYRDISIRFPNLCRICGEPSLDGIEIFTEKGIELKLKDKISFHLPIVVDVEDLMPQKLCMNCYNKLEIAHSLVVTCLKTDMKLKRFLNINEEMNYDNKYNAIVKACSLDIAKEICSNDENQTTSIELSSDKVDEIAMNQDITTKLNYLENIDTQKTNFANNVRKEMQSELNNFIESYNKENKEDNSINKTTNNPNNDGTNNTNKIACFHCKDSFKTQEIFENHKMLCDGEEIIIQKQKEITEISDINNEEEMTFHFVTKTCNICDKSFNDEKLFAEHEFSHCEHYQEKQCQIPDKLSITEEQQNIYEHSLAINSAATVETNKQCGHCESIYCIKKDLLNHIEKCHGGQLLFKCIKCNKSYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDTRKKRHVCEICGNAFRSRFHLGEHMNQHNGNKPYSCEKCGKAFYKRIQLRQHKLSHGVNKHICPICGAAFNRKGNMNTHLKRHDNGDGIYTCSVCAYRCKSMSELKLHRKKHTEEDIIESIRKKCTDKTVWQCEVCSRIFSTRAVLLNHERIHKGEKMNVKCNICGKQLANKNSLIYHNKSIHSKERPHMCQYCGGAFVSKESRLIHERIHTGERPYICKICNMEYKCSSNLNQHMKIHSGIKPHRCTYCDKSFTRKGALRVHERIHTGEKPFSCDTCGKMFSQKNDMLKHTKMHKVKTMRCEQCDEVFMKRKDILKHVAFHEQENPIVQEYVEVRQHIQPYNVNITCSEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00361077;
90% Identity
iTF_00361077;
80% Identity
-