Ccol018377.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colletes collaris
Gene Symbol
ZEB2
Assembly
GCA_030068185.1
Location
JASGYR010000261.1:4760443-4763932[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0033 0.4 12.0 3.4 2 23 176 198 175 198 0.96
2 16 0.00049 0.059 14.6 0.6 1 23 202 224 202 224 0.98
3 16 0.0011 0.13 13.6 3.4 1 23 229 252 229 252 0.97
4 16 0.0016 0.19 13.1 3.6 1 23 284 307 284 307 0.97
5 16 0.011 1.3 10.4 3.3 1 23 317 339 317 339 0.96
6 16 2.1e-07 2.6e-05 25.2 1.2 1 23 343 365 343 365 0.99
7 16 9.4e-05 0.011 16.9 0.3 1 23 371 393 371 393 0.97
8 16 1.5e-06 0.00018 22.5 2.0 1 23 399 421 399 421 0.99
9 16 2.8 3.3e+02 2.8 1.0 2 23 662 684 661 684 0.92
10 16 0.002 0.23 12.8 1.3 1 23 688 710 688 710 0.98
11 16 0.00013 0.015 16.5 2.3 1 23 717 740 717 740 0.97
12 16 0.014 1.6 10.1 0.1 1 23 759 782 759 782 0.97
13 16 0.0055 0.66 11.3 4.4 1 23 792 814 792 814 0.98
14 16 1.8e-05 0.0021 19.2 0.4 1 23 818 840 818 840 0.99
15 16 0.00017 0.021 16.1 1.8 1 23 846 868 846 868 0.99
16 16 2.4e-06 0.00028 21.9 2.5 1 23 874 896 874 896 0.99

Sequence Information

Coding Sequence
ATGCCAATTCGAATTAAGGACCCTCCACCTTCCGACAATGAGGATAACAGTAGTGCACAGTGCGATTTCGAAAGCAATTATGATTATCTCGATATGAAACCAAAACTCGAACATGAAGACGGAACTAATGATTTTGTTGAAACAAATTGTTGTTCGTTGCCAAACATATCCAAGGATAGTTGCATGTCAAGTggatttaataataattcactTGAGACGGAAGTTAAGCAGATTAAAGAAGAACCTTATGTGGACACAGCTGAGGTAAATGCTGACCTGAGATCAAATATAGTCGTATTTGCGTCAGTTGGTATTAGAAACAAGACAGTGTATACCTGTGTTCGGATACCAGATCTGAATCCATCGATGTCTGCTGACTTTGAGAACGCTGAGGACCAGTTTTATACCGGATTGATGCAACCCCCAAAAATGGAAGACAACGTTCTACCAAGACTTCAAGAGTCAGTATCAATGACGGATACGTGTGGAAGCGAGGTACAGTCGGTATATGAACATCTGTCAACCGTCTGTCCATACTGTCACAACACTTACTCTTCCAAGAACGGGATGCAAAAGCATTTTCGCAAATACCATCAGAATCATTATCGTTGCAACGACTGTCAATACATTTACGAAACTCAGGATCTGCTCGATGAACATTCCAGGAGTCATAAAAAGCCCCCGTTTCAATGTACTTCTTGCAACAAGAAGTACAAACACACGTGGGGATTGAAGCAACATCAGATTCGTGCGCACAGCACCATCGAACCGGAAGCGGTAGGCAAGAAGGACAACGAGGATGTGAAATGCAATTACGAGTGCCAGAATAAGGACAACGAAATGAAAACCTTCCACTGCGAGCACTGCGACAACGCATACGTGCGTTACTCTCACCTGGTGGCTCACGAACGCATCACTCACGGGTTACAGTCGAATCGACCTAAACACTTCGAATGCAGCATCTGCAACAAGTATTTTTGCACCGAATTAAACATGCTCAATCACTCTAAATTGCACGGTCAGAGGTATTCTTGCGATTACTGTGGCAAGTCGTTCAGAGACAAGTACCTTGTGAGAATACACTTGCGAATGCATACTGGCGAAAAGCCATTCGAATGCAAAATTTGCTTCAAACGCTATGCTCGAGCGAACGGGCTCAAGTTGCACATGATCGCTCACTCGGGGAGGAAGCCTTACGTGTGCAACATTTGTGGCCGAAGTTTCACCCAGCGGGGCAGCATGATGATTCATCATCGCAAGCACCCAGGGAATCATCCACCACCGCCACCTGTGTTCCTTGATTCTTCAGCAACAGAAAAGTCTTCTACACTGAACCCAGCACAACCACTTTTTGTAGTATGTAATGGACCTTTTGTGGGCCAGGAAGAAGTGCCAATACAAATTAAGGACCCTCCAGTATCCGACGATGAGGATAACTATAATCCACAGTGTGATTTGGGATACAATTACGACGATGTTAAAGAACTAAAAACGGAAGGAAAAGAAGCGAAAAAGGGCATTAACAATCTGTCACTGGATGGAACGGATTCTTGTCCGTTGACAGTTGAACCTAACGATAATGTTAATTCCCTGGTGACAGAAGTGAAACAAATCAAGGAAGAACCTTTTACAAGCCCAACAGTGGCCGATTTGGAACCTGTTACGGATCCCCTAACAGCACAGCGTACAAATACGTTTGTACCAATCGCAGTGAAGATCGAGAAAGAAGTAAACGTCTCTAACAACGTTCTGACGGAACAGGGTGGCGAACAACAGCAAATCGAAACATTTCCATCGATCAGATTGAACGGAAAACTCATTAGGCTTAAGTTCGCTAATTTACAAATGCCGAAGAAAAATCTTGGGAGCGTGCAAGCGAAGGAGAAACAGGTGATGAGACGGAAGGGGCACAGTTTTCAGGAAATTCCAGTGGTAGATACAGCAGTAGGTGACGTGGAGATGGTGTACGAAAATCTACGAACCATGTGCCCCTACTGTCGCAACACCTACGCTTCCATGAACGTGATGGACAGACATTTCCGGAAATTCCACAAGGATCATTACCGTTGCAAAAAGTGCCAATATATTTACGAGTCGCAGGATCTGCTCGACGAGCACTACAAGTTGCATACGAATAAACCCACTTTATTTCAGTGCACCAACTGCAAGAAGAAGTACAAACGCCTGTGGGCGTTGAAGCAGCATCGAATTCGCGAGCACAGCATCATGGAACCGGAAGCGATCTGCATCGAGGACGACGATGGCTCGAAGACCTATCCCTGCCAGCACTGCGAGAACGTTTACCCGATGGTCTCTCAACTGGTGGCCCACGAACGCATCACGCACGGGATACAGGAGAGACGACGCAAGGACTTCCGGTGCGGATTCTGCAAAAAGTATTTCTGCAGCGAGGAGAGCCTGCGCGATCACTCGAAGATACACGAGCAGAAGTACGTCTGCGACGATTGCGGCAGGGAATTCAGAGCGAAGTACCTCGTGAGGCTGCACATTCGGAAGCACACTGGCGAGAAACCGTATCAGTGCAAGATCTGCTTCAGACGCTACGCCCAATCGAACGCCCTGAAAATGCACAAGCTCACGCACACAGGCGAGAGGCCCTACGTGTGCAACGTTTGCGGCCAGAGCTTCACGCAGCGGAGCAGCATGATGATCCATCATCGCAAGCATCCTGGAAATCATCCAATACCGCCTCCCGTGTCTCTAGCCAATCTCGACAGCGACAAAGATTAG
Protein Sequence
MPIRIKDPPPSDNEDNSSAQCDFESNYDYLDMKPKLEHEDGTNDFVETNCCSLPNISKDSCMSSGFNNNSLETEVKQIKEEPYVDTAEVNADLRSNIVVFASVGIRNKTVYTCVRIPDLNPSMSADFENAEDQFYTGLMQPPKMEDNVLPRLQESVSMTDTCGSEVQSVYEHLSTVCPYCHNTYSSKNGMQKHFRKYHQNHYRCNDCQYIYETQDLLDEHSRSHKKPPFQCTSCNKKYKHTWGLKQHQIRAHSTIEPEAVGKKDNEDVKCNYECQNKDNEMKTFHCEHCDNAYVRYSHLVAHERITHGLQSNRPKHFECSICNKYFCTELNMLNHSKLHGQRYSCDYCGKSFRDKYLVRIHLRMHTGEKPFECKICFKRYARANGLKLHMIAHSGRKPYVCNICGRSFTQRGSMMIHHRKHPGNHPPPPPVFLDSSATEKSSTLNPAQPLFVVCNGPFVGQEEVPIQIKDPPVSDDEDNYNPQCDLGYNYDDVKELKTEGKEAKKGINNLSLDGTDSCPLTVEPNDNVNSLVTEVKQIKEEPFTSPTVADLEPVTDPLTAQRTNTFVPIAVKIEKEVNVSNNVLTEQGGEQQQIETFPSIRLNGKLIRLKFANLQMPKKNLGSVQAKEKQVMRRKGHSFQEIPVVDTAVGDVEMVYENLRTMCPYCRNTYASMNVMDRHFRKFHKDHYRCKKCQYIYESQDLLDEHYKLHTNKPTLFQCTNCKKKYKRLWALKQHRIREHSIMEPEAICIEDDDGSKTYPCQHCENVYPMVSQLVAHERITHGIQERRRKDFRCGFCKKYFCSEESLRDHSKIHEQKYVCDDCGREFRAKYLVRLHIRKHTGEKPYQCKICFRRYAQSNALKMHKLTHTGERPYVCNVCGQSFTQRSSMMIHHRKHPGNHPIPPPVSLANLDSDKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00361070;
90% Identity
iTF_00361070;
80% Identity
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