Ccol010040.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colletes collaris
Gene Symbol
-
Assembly
GCA_030068185.1
Location
JASGYR010000081.1:26533792-26536231[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00011 0.014 16.7 2.2 2 23 281 302 280 302 0.97
2 15 0.00058 0.069 14.4 3.7 1 23 308 331 308 331 0.96
3 15 1.7e-05 0.002 19.3 1.8 3 23 413 433 411 433 0.97
4 15 6.4e-06 0.00077 20.6 1.8 1 23 439 461 439 461 0.97
5 15 0.00042 0.05 14.9 0.6 1 23 467 489 467 489 0.97
6 15 2.9e-07 3.5e-05 24.8 0.8 1 23 504 526 504 526 0.98
7 15 2e-05 0.0024 19.0 1.3 1 23 532 554 532 554 0.92
8 15 9.6e-06 0.0012 20.0 2.3 1 23 560 582 560 582 0.98
9 15 0.00085 0.1 13.9 0.2 1 23 588 610 588 610 0.99
10 15 3.8e-06 0.00045 21.3 0.3 1 23 616 639 616 639 0.94
11 15 1.9e-05 0.0023 19.1 1.3 1 23 645 667 645 667 0.98
12 15 0.00042 0.05 14.8 4.7 1 23 673 695 673 695 0.98
13 15 6.3e-06 0.00076 20.6 0.2 1 23 701 724 701 724 0.96
14 15 4.2e-06 0.0005 21.1 0.6 1 23 730 752 730 752 0.96
15 15 3.7e-06 0.00045 21.3 4.5 1 23 758 780 758 780 0.99

Sequence Information

Coding Sequence
ATGAATTCATATTGTGATACCGCGAACAGAAAATTATATCACAGAGGACAAATTGATGTAATAGATATGCCAACAGAATTAACTTGCAATTACAAGTACTTCTTTGTTTATGAGGATCAAGTTTCCAAATTTGTCGTGTTAAAAGGTTTACATGGGAATACAGCAAGCGAAGTAGCTAGGAAACTTTTAGATACGTTGGCCATTATTGGAGCACCACAGGTTTTGCAAAGTGCTAATGGACGAAAGTTTGCAGAACAAGTTGTGCAGGAATTACGTTCTTTGTGGAAAGATTTTGTTATACTTCATGGAGAAATCTCAGAGAACAAAGAAAATAGCAGAGATTTCAAAAATTTGCTGAAACATTGGGCGCAAAAAAACCCGACAAAAACATGGTACGAGGCTTTGAAGCATGTTCAGATATTTCAAAACTCAACGTTCTGTTGTGAAAATGGAAAGATACCTTATGATATATTGTTCGGACGAAATGTACACGAAGAATTTCAGAAGCAGGCTAACACGATACCTAAGAGAGAAAACGTATGGACAGAAGAAGAATGGATTAGTCTTGTGTCCAATAAAAACAACGATATCGAAAAAGAAGAAACTGAGAAGTTTGCTGAGAGTTCGAGTTTTATAAAAATCGGAGACATGGATAGTTCAAGAGACGACGACAGTGACTCTTATAGTATAGTAAAGGATGAGCTTCCAAGAGATACTCCAGGCTTTAATTTTGTTGATGTTAAAAGTGAACCTTTGAACATGCATACGGAAGATTCGGTATTCGAAGACGAATCGATAGTAGATGATAAAACAAAATTAGTTTTCAAAAGTCAAGATTTAAAATGTAGAATCTGCCAAAAGCAGTACATGAAGCCTGGTCACTTAAAGAATCACATGAGAGCGCACATcaaaggaaaaaaattcgaatgcaAATTATGTAAAAAGACGTTTCATGTTCTCAGTTTATACGAGAAGCACATGCAACAGTCTCATAGACAAAATAAGTTATCTAGACTGTGTAACACTAGAAGAAATAAAGATTCACGAGAGAAAACAGTATTGGACACGAAAACGTTCAAGTTGGATTGTTCTTCGAATATAAATTTGAGCGAGACCGAATCTAACGTTATGGACGAAGATCCTAATGTAACAAAGAACTCGAGTCTTtttaaagagagaaagaaaatttCTGCAGAAATTCGTTCGATGAAAGTAAACGGAGATCCGACTTTAGATTGTACATACTGCAAACAGAAATTCAACTTTCCTAGCGTATTAAAAAGGCACATGCGATCTCACACGAACGAAAGGCCTTACATTTGcgaaatttgtaataaaagcTTCAAACAATTAGGACACCTTAGTCAACATTCGTTAACGCACAAGGACTATCGTTCTTTCCATTGTGCGGTTTGCGGTGTTAAATTCGAATCGTTAGGCTCGTTAAAAGTCCACACTCAATCGCATAAGGAGGATTACATTTCAAAAACGAAAGAGGCTTTCCGTTTGTTCGAATGTGAGAATTGTAAAAAGGTGTTTACCACTAAAAGTGTCCTGGAACGACATATACTTACACACTCCCATGAACGTCAATTCGCTTGTATAATTTGCGGGAAAAGGTTTAAACAAACGGGACACTTGAAGTCTCATATGTTGGTTCACACGGGCGAACGGAAATTTGAGTGCACGGTCTGCAAAAAGAGATTCAGCCTCTCGAACTCTCTTAAGAAGCATATGTACGTGCACAACGGGGAGAAACCGTATCAGTGCGACGTATGCGGCGCGCGATttcttgaaaaaagaaatttaaacggGCATCTGATGACCCACACGAACGAGCGTCCGTTTCGTTGTAAAATTTGTGGGAAACGGTACACTTTGGCGGACACTTTACGACGTCACATCAGCGCCGCACATGAGGAAGGTCGTACGTATCAGTGCGAGATTTGTGCGAAAATGTTCAAACAGTTGGCCCATCTCTCTGTTCACAAAAAAGTACACAATGACGAACGACCATTCCAGTGTCATTTGTGCGAGAAAAATTTTAAGCATAAAAACGTTCTCAAGTCCCATTTAGCCATTCACGCTAATGTAAGGCCATTCGAATGCGACGTGTGCAAGGCTACTTTTGTAAGGAAGACGAATCTGCAGACGCATATCGCGTCGGCTCACATGAACGAACGACCGTACGTTTGTACGATTTGTGGGAAACGGTTCAAACAAATTAGTCACTTGAACGGCCACGTTGTAGTGCACAGCAATTTAATGCCTTATCAATGCGATTTTTGTGATCGACGGTGCAACAGACTCGACAATTTGAAAAAACATATGCGTCTTCATACGAAGAACAAAGAGGAAGTAGCTTAA
Protein Sequence
MNSYCDTANRKLYHRGQIDVIDMPTELTCNYKYFFVYEDQVSKFVVLKGLHGNTASEVARKLLDTLAIIGAPQVLQSANGRKFAEQVVQELRSLWKDFVILHGEISENKENSRDFKNLLKHWAQKNPTKTWYEALKHVQIFQNSTFCCENGKIPYDILFGRNVHEEFQKQANTIPKRENVWTEEEWISLVSNKNNDIEKEETEKFAESSSFIKIGDMDSSRDDDSDSYSIVKDELPRDTPGFNFVDVKSEPLNMHTEDSVFEDESIVDDKTKLVFKSQDLKCRICQKQYMKPGHLKNHMRAHIKGKKFECKLCKKTFHVLSLYEKHMQQSHRQNKLSRLCNTRRNKDSREKTVLDTKTFKLDCSSNINLSETESNVMDEDPNVTKNSSLFKERKKISAEIRSMKVNGDPTLDCTYCKQKFNFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFESLGSLKVHTQSHKEDYISKTKEAFRLFECENCKKVFTTKSVLERHILTHSHERQFACIICGKRFKQTGHLKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEEGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKEEVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00087362;
90% Identity
iTF_00361059;
80% Identity
iTF_00361059;