Ccol024976.1
Basic Information
- Insect
- Colletes collaris
- Gene Symbol
- Trerf1
- Assembly
- GCA_030068185.1
- Location
- JASGYR010000369.1:264875-292355[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3 5.9e+03 -1.7 0.1 29 42 734 747 732 749 0.87 2 2 8.4e-11 1.2e-07 32.6 0.0 2 46 900 944 899 944 0.96
Sequence Information
- Coding Sequence
- ATGGACAAAGTGAAATATATTCCTTCCACAGAAAGTTCAAACcaacaacaacagcaggcTCAGCAACAggtgcaacagcagcagcaacagcagcaacccCAACAGCagcaccaacaacaacaaccacAAGCTAATTCACCAGGAAGCGGAAACGTAGGGAAAAGTAGTCCATCGCCGGGAAATTCGGCATCCCCTGGCACTGTTACAGCAAACAAGTCGCAGACCGAACCAAAACCAGTCGAGTGCAATTTGTGCCATCGGAAATTCAAAAATATACCAGCTCTCAATGGCCACATGCGACTCCATGGTGGTTACTTCAAGAAGGATGCCGAGAATAAGAAAAGCGAGAAGAAGGAGGTGGTCGGGCCGCCCTTGCAAACCGCGTCTGTCAGCGTCAGAGCACTTATCGAGGAAAAAATTATCCAAAAGAGGACTACTGcAGCAGACACGAGCACGAATCAACAGCCACGCACAAACGCCACTGTGTTCACCACGCAGGCAGACAGCGGGTCGCAGGTCGTTGGAAAAACGAACTTCGCGGTACCAGCACCGCCGCCATTGGCCTCCGCGGAGAAGGTCCGCCGACTCTCGGATGGCGAACATTTCCGACAACCGAACGTCACCGTTGGGGGTCATGCAACCGTGCAGAAACAACTGCAGGAAGCACAGACCCAGGCACAGGCGCAGGCGCTGGCCGACATGATTTTGAAGGGCACTACTAAAATGGCTGTGAAGAGGACGACATCCGATCCCGGGCAGAGATTGCACTTGACGTACCAGACGTCGGTTCAATCGGCGACCAatcagcaacaacagcagcaaaaTAACCAGCCTCAATCTCAACCCGCAGTCACAGACAGTTTCTCGATGACAGGTTACTCCGAGGACGGCGGGTACTTTAGTCCAAGCCTTCAAGACGAAGTGTTCCAGCAGGTCACCGCAGTTCCTGACAGCGTTCTGCTTCACGCTACTCAATTGGACTCTCTACAGTTTCAGACGGCGAGCTTGCTCCAGGAGCAAACCACCGAACAACTGCAGGACATCACTCTGGAGGAACGATACTCGTCTCAGCACACCGTGAACCCAGACCTCCAGGCGTTGGTGAACTCGCCATTACCCGACTCTTTGGCCGAGTTCAGTACATACGGCGCACAATACACGGAAAGTCCGCACACCCTGCCCACCCAGTCCCCGCTGCCGTCGCCTCTGACCAGACACGACAGTCCAAGTTTCACATATCCGACGCCGCCAGCCAGCCAAGAGGGCCTCCTGACCGGGAGTCTGCCGTTGCTGAGTCCGCAAGAGGACCCGGAGAGCGTGAGGCAGGTCTCGTCGCCGCTCTCCGCGGCCTTCTACACGTCCACCATGTCCTCCGCGGCAGCGGTGGAGGAGGCTCTCAGCGAAGTGTTGCCAGGGGAATCCGACGCTGACGCCGACCTCTACGGATCGGGTTCGCCCAACCCTCACTCGCCACTGCCAAGCCCTTTGTCGGCGACACCGGCACCGTCGCCGTTGTCCTCCCTGCCGCCGTCCTCCGTCTCGTCGCCAGGACCGGTGTCCTTCACGGGCACCAGTTTCCCCGTGTCGCCTCACCACGCTCTGCAGAGCCAGATGATGCCAAACTCGGAGGACCCGTTGCTCTCGTCTACGCCGAAGGACTTCACCACGGCCAGCCGCAGACGGTTCGAGTTTCAGTCGTACAAGTTCATCACCAGCCAGAACCTGGTGGACTTCGGCCTGGGGAACGGCAGCCTGGCCGGGATCGTCGTCGACAACAATGGCGAGTTCAAGCTGATACAGACCGCGGGGCTGCAGAAGACGAACGTCCTCGTTCAGACCGGCTCGCTGAGCCCGGCGTTGACCTTCAAGAAGGAGATGCGCCTGGCGACGCCCAAGGTGGAGCCCGTCACCGTGAACCTCGGCCTGAACGTGCAGACGAACCACCAGTACAACGCTGGACAGTTCAACCAGCAGCAGGTCGTCAATCCCGCCAAGTTTCTCATACAGACCAACACGGCCAAGAACGGTAACATGAGACAGAAGACGTCCAGCCTGCCGATCCCGGTGGAGCAGATCAAGGAGGAACTCCTGGACGAGGACGTGTTCCTCAATCCCAGCAGCATACCAACCGGTAGCCCTGTACGACACTGTAGGAAAAGGCCTAGAATGGACGGCGGCCTCTACGCCAGCGCGTCTCATTCGTACCCGTCGAGGCTGAGGAAGGCCTGCGATCGACACTGGGACAGCAGCTACACGCCACCGCCGATTTTGGACCCGTCCCGTCCTGGGCCCGGACTGTACGCCAGGTTGCATCAGTACGAGAGAGACTCCGACTTCAGCTCGGACGACTCGCAGGGAAACGACGGACCACCGCCCAGGATCAACATCGGGACGAGGTACCAGGCGACGATACCGCCGGTGGGCAGCGACGGTGACAGAGGAAAGGGAGAACCCGAGGCTGACCACTTGCTCTGGGATCCTGGTATAAATAACGTGCTGACCGACAGCGAACTGGAGATGTATTTGCAATTTGCATGCTGCGCTGCGGTGCCAGGCGGAGGGAGGAACAAAGAGTACGCGTTGCATCTGCTGCACATGTGCAGAGGAAACATTCATGAGGCGATGCTGAAGCTGATGAGACCAACGCCCATGTTGCCAATGGAACATCCGCTGCTCAGTTACGAGTGCCAGGAATCGGACAGGTGGACGTCGCAGGAGATGGACGTGTTCTATCAAGGTCTACTCAAGTACAACAAGGACTTCTCCGCGATCTCGCGCGACGTGAGTGGCAAAACCGCGAAACAGTGCGTGCAATTCTATTACCTATGGAAGAGGCTCTGCCCGGACGAGTACAAGAGACTGCGTGTCCGTCATGGAAAACCAAAGATTAAGACAGAAAGCAAAGATTGCAAGGACACGAGGGAACTTCGAGATGCTATCGCATCCGTGACGGAGATGGACTTCGGTGAAGACAAATCGATCCTCCATCGTACTCTGTTACAGACGAACGAGAGAGAAAACTCGGCTACTCTGACCACCAGCGACGGGGAGCTGAGATTATTCGCATACGACTGCCCAGATAGCTTTAGCGGAAGTGTAACAGTAACGATGGCCGGAAGCACCCAAACCGCCCAAACCGGCAATACCGGCCACGCCACAGTCAACACCAACTCACAAACTCACACTAGTTCTGAGCAACAACTACCCGTGCCCACCCCACTTCACTACCCCTGCAAGATTTGCGGGAAAGTTTTCAACAAAGTGAAAAGCAGAAGCGCGCACATGAAATCTCACAGGCCAGTGCCCTCGCCCGATTCAACGGGTCAGGAATCTAAACGGCCTGCACAGCAGCAGCAATCCAAAGCTCAACAGTCCCAGCAGCAGTCCAGCCAGCAACAACGTCAGCAaccacaacaacaacaacagcaacaacaacaacaacagaagcagcaacaacaacaacagttGCAGTCGCAACAGTCGAGCAGCGTTTCGCCGCAGGCGACGGACTTCGCCAATCAGCAGCCACTGCCTCCAAGCAACGGCGACCCAGGCGCTCAGAGCACCGCGCATTTATGGCACAACCCGACGCGGCTCAGGCCACCATAG
- Protein Sequence
- MDKVKYIPSTESSNQQQQQAQQQVQQQQQQQQPQQQHQQQQPQANSPGSGNVGKSSPSPGNSASPGTVTANKSQTEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKSEKKEVVGPPLQTASVSVRALIEEKIIQKRTTAADTSTNQQPRTNATVFTTQADSGSQVVGKTNFAVPAPPPLASAEKVRRLSDGEHFRQPNVTVGGHATVQKQLQEAQTQAQAQALADMILKGTTKMAVKRTTSDPGQRLHLTYQTSVQSATNQQQQQQNNQPQSQPAVTDSFSMTGYSEDGGYFSPSLQDEVFQQVTAVPDSVLLHATQLDSLQFQTASLLQEQTTEQLQDITLEERYSSQHTVNPDLQALVNSPLPDSLAEFSTYGAQYTESPHTLPTQSPLPSPLTRHDSPSFTYPTPPASQEGLLTGSLPLLSPQEDPESVRQVSSPLSAAFYTSTMSSAAAVEEALSEVLPGESDADADLYGSGSPNPHSPLPSPLSATPAPSPLSSLPPSSVSSPGPVSFTGTSFPVSPHHALQSQMMPNSEDPLLSSTPKDFTTASRRRFEFQSYKFITSQNLVDFGLGNGSLAGIVVDNNGEFKLIQTAGLQKTNVLVQTGSLSPALTFKKEMRLATPKVEPVTVNLGLNVQTNHQYNAGQFNQQQVVNPAKFLIQTNTAKNGNMRQKTSSLPIPVEQIKEELLDEDVFLNPSSIPTGSPVRHCRKRPRMDGGLYASASHSYPSRLRKACDRHWDSSYTPPPILDPSRPGPGLYARLHQYERDSDFSSDDSQGNDGPPPRINIGTRYQATIPPVGSDGDRGKGEPEADHLLWDPGINNVLTDSELEMYLQFACCAAVPGGGRNKEYALHLLHMCRGNIHEAMLKLMRPTPMLPMEHPLLSYECQESDRWTSQEMDVFYQGLLKYNKDFSAISRDVSGKTAKQCVQFYYLWKRLCPDEYKRLRVRHGKPKIKTESKDCKDTRELRDAIASVTEMDFGEDKSILHRTLLQTNERENSATLTTSDGELRLFAYDCPDSFSGSVTVTMAGSTQTAQTGNTGHATVNTNSQTHTSSEQQLPVPTPLHYPCKICGKVFNKVKSRSAHMKSHRPVPSPDSTGQESKRPAQQQQSKAQQSQQQSSQQQRQQPQQQQQQQQQQQKQQQQQQLQSQQSSSVSPQATDFANQQPLPPSNGDPGAQSTAHLWHNPTRLRPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01068231;
- 90% Identity
- iTF_00360843;
- 80% Identity
- iTF_00360550;