Ccol009035.1
Basic Information
- Insect
- Colletes collaris
- Gene Symbol
- Arid2
- Assembly
- GCA_030068185.1
- Location
- JASGYR010000081.1:13371246-13380173[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-16 5.5e-13 49.9 0.0 1 47 15 61 15 77 0.94 2 2 1.4 5e+03 -1.2 0.1 42 57 187 202 183 205 0.84
Sequence Information
- Coding Sequence
- ATGGCCAAGATCCTCAACAAGGACCCTGTCACCTACGAGAGGGAGAGGGAAAACTTCCTGAAGGACCTCCGTCACTTTCATGAGACCAGAGGGACTTCGTTCAAGAAATGCCCGAAAATTAATGGAAAAGATGTAGATCTGTACTTGCTATACGTCGTCGTCACTGCCCACGGAGGATGGATCAAGAGGGGGAAAAGAGGAGGCGTAGAAGGGACCGTCGCAAACGAGAGAAGCTCCTCGGGAAAAGGACCAAGATCGCGATGCGCGGAGAGTGCAAGATACAGAAAGAAAGAGGCAGAGGGGAAGCATGTACGGTTCGCGCGAGTGTCCGGCTTGTTCAAGGGCGCGACTGGTATACGAAGAGTGTTCGGCGACCGTCGAATGGGCACGCACCGTAGTCTGGCATTGGTCTGCTCGCTATACGCAGTGCGTGTAGCGTGCGAGGAATCCGCGACGAAGTCGGTAATGCTGAGTCAGTCAGGTGCCGCGGCGCCTTGCATCGTTTCGAAGTGGTCAGAACCGCGAGAGCGCGCGCAACAGAGAAAGAAAGACCAACAGCGGCCTGGAGGTATAGACAGAGAGACACGACGGGGATTATGGAGAAAAGAGTCAGGCGGAACGAAAAGCGAAAGAATATGGTGA
- Protein Sequence
- MAKILNKDPVTYERERENFLKDLRHFHETRGTSFKKCPKINGKDVDLYLLYVVVTAHGGWIKRGKRGGVEGTVANERSSSGKGPRSRCAESARYRKKEAEGKHVRFARVSGLFKGATGIRRVFGDRRMGTHRSLALVCSLYAVRVACEESATKSVMLSQSGAAAPCIVSKWSEPRERAQQRKKDQQRPGGIDRETRRGLWRKESGGTKSERIW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -