Ccol005490.1
Basic Information
- Insect
- Colletes collaris
- Gene Symbol
- JARID2
- Assembly
- GCA_030068185.1
- Location
- JASGYR010000078.1:21940126-21946633[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3 1.5e+04 -2.8 0.4 50 83 146 178 144 179 0.58 2 2 8.4e-23 2.9e-19 70.0 0.0 6 89 1344 1425 1340 1425 0.94
Sequence Information
- Coding Sequence
- ATGGTGTTGAGTCGAAATGATAAacggaaaagaaaagaaggggATTTGGTGGATCTTATGGAGCCACTCTCAGAATCTCCAAAGAGgACCAAAGTACACGCGCAAAGAAAATTTGCACAAGGTGCAACAACAGTTTTCAATGCTTCGCATACACCAATTAAAGATAAAGAAAAAACTAAACCAGCAGTTATAACAGAGTTAATAACACACAAACGACCTAATACGGAGGACTTTTTGACATTTTTATGCTTCAGaggaACATCAATTTTACCACCGAACTTAAATTTTTTCAACGTgggaaacaaaaaagaaaaatcagaTTCAAAGTCGGTACGTGTACCGATAGATAAGACGACATCTTCGACCAGTACATCGATCGAAAATCAGAAACCGGATTCGAGTCAGAAAACTATTACCAAAATGAAACCTATTGTTACGAATAAAAAGAAGGTTCAGAATACAATACAAAAGAATATTACTAAATTCAAAACAACAACATCCACTGTACAAGCGCTTAAGAAGAAGTATCAAGAACAACGTCTCGCTAAACAAAGAATTCAAAATAAGTTTAAAACGTCGTGCGTTATGAGAACAAGATCTTGTACAGAAAGAGCAATTTTAAAACCTGGAAACAAATTGACACCTAGGAAATTTCTTCCGAGAATTGAGACTAAGAGACTTGGTTTACGAAGTAGCGTACTTACAGATAAGGTGAAAAAGACCTCTCCGAAAGCAAAACCTGTTCCACCTAAACCAAAGAAAAAAGTTCTTGTGAAACAAAAGAACAGTGATACGTCAAATTCGGAGTCAACGTCCGAAGAAGAGGAGGAGCCGTCGGAAAAGTCTGTACAGCAAGTAAAACGTGCAACGCAAAAGAGTGTTCAGAAGAAGATATGTACGAGAAGCAAATCTGAAATGAGAAGAATCACTCGTTCCCATAGCGGAACAGTTTCTCCAAAAAATCTTTGCAGAAGACCAACCAGAAAGACAAAAGAAGCAGCTGCGGTATACATGGAAATTCTTGGAAGAAAACTTGTTAGCCCTGACTTAGAAAATGATGATAATCTTTCTATGGACAGTTTCCCAGAATTACCGAACGCGCGTAAAATTGCACAGACAGAGAGTGAAATTAAAGCCAAAGTAAAGCAATCTATTACGAAAACAATTACAAAGAATAAAGATGGTAAAATTACCTCTATTCAGAGTACGTCTAATAAACGTTCGGAGAAAACTAAAACTAGTAAAATTACCTTCAAAAGTAAAAGACTCATAAGGGTTCAAAAATATTGTGAGATAGATAGCGATGAAGAATCGGAAAGCTCTAATGGAACTAATAATGCAAGGCCTGTTACGAGACGAAGTTtaggaaaattaaataaacctGCGAGTAGATTTCTTAGATCCTCTTCTAAACCTGTGGTCTCGCGAATGGAGATTCaaaatactgtaaatattaaATCGAAATCTCAGGTTCAAAGTAACATGAGGTTTAATAAAGAGAAATTTGTAATGAAACGTAAACGAGAACAAAGTTTTAATAAATCGTTACCTGAGAAGGGCACAACTTCGAAACAGAAAGAAACGAAAACTACTGTGAATGAAAATACAGATTCCGATGAGGAAACATTAGGGATGTTGCTTAATAAATTGAAAAGGAAAAAAGCTATTCACGAACAAAATCAACAGATTGCCGCTAATGAAAACAATGACGATCATGCTAATACCAATACTAATGTGGAGAAAGTTGAACAGCCTGTGGATAAACATTCCACGAAGGTGGATGTTTTGAAAGTATCGGACGACGAAGAATCTTTTCGGGGGTTTACAAGAAAAGCAATATCTAAAGTATTAAATTCATGTCAAACGCATGTTAATGCTAATCTTCTTGCCACAGAAAAAACTACAAGTGTATTGGAAGCATCTAAGGCGGAAGAAGCGGAAAATTCAAATACATCTAAGGAGCAGGAAGATAAGAATAAATCATTACTGGAACAAACTTCTCTTCCTACGATGAATGTGCCAAATGACGAATGTATTCAGTCCGAAAAGATTCAGAAGACAAAATCAGAATTGCCGGATGAAACAGAATCTCAAACAACGTTGTTAGCCACTACCGAAAAAGAATGTTACCATAAAACAGAAATTTCTTCAACAAACGTTCTAGATATGTCTTTGTCAACGTTACATGTGAGAAAAGAGAAGGTAAACATGTCGAACgaacaaattgaaaaatggtTGAATGAAAGTTCCTTCGCCAAAGAGGAAAGTAAGTTGGAAATGGAAAATGTATCTACGTTTAAGTACGACGTTTGCGAGAAAAAGTCTGATGTCTCGCATTTATCTATCTCGACGAAAATTCAACATTTGGTAAGACCAGTTAACGTCACACTTTCTAAATTAGCAGAAAAAGCAAATATAAAAGATCGTATGTGCATTCAGAGTAAATATGTACCCATTGCAGCGGTGGATATACAATCTGTTGATATGAAACAACAAAACGAACCTATTAATGTCAACAAGATTAATACAGACGGAAAAGAAATGATCAAAGGACGAAATATAAAACTGAGCAAAGATCCGTGTCTTGGAGAAGATAATGATACACCATTGAAATCCGAACAAAATTCAATGGACGGGTCTACGGAGAAGAAATTGCCAACAGAAAAGAAATCTATATTTCAACCTAGAAAACCATTTTTACCTAAAGTAAAAGAGCGTAAAACAGTAACTCCCAATGCAAACGCATTTTCTCCGGAAAATGAGAGCAGCGTTTATGCGTTTGAAAGCGATACCGAAGTCCCGGTTAATACTCCGTTTAGGCGCAAAGTTCGCGATTCCAATAAATCAAACGTGACTATTACTTCATCCGAGAGTGATACAAATAAAAGCATAGAAAAAATAATCAAAGAAAGCTGTGAAATGGCAGAGCCTAAGGAAAAGCCCAACAATGTTCTTTCAAGAAATGACAATAAAATAGAATCGAAAAATACGTCGAATTCAATGTTGAACGTTAACAAGTTTGAATTACCCAAAAACTTTGCAACGTTGGCTAATATACAAGTTTTACCATTAGACAAGTTAACGACAACTTGGAGTAATGTAAATTGTAGTGCTTCGATAGCCGTTCAAGTAAATCTCGATGAGAGTGCGCAGACTCAAGAACAAGCGCGGGAGAAAGATACAAATCAACAGAAATGTACGGAAATATCTACCCAAACGGAGAACAATAATGAAAATGACGATGAAAACGATGGTCAACTATTTTATATACCTTTGCAAGCTGTTACAAGAAACGGGCCGAATTTAGTTCAAGGGCAACAATTGATCCAAGGGGTAGCTGTTAAACTCGGTACCGAAGGACCAAACGGACCTAATCAAAAAGTTCTTTTGAGGGCTAAATTAGTTACCAAACCACCGTCGTCGATTGCGCGTTGCCCTCCCGTGGGCACAGTGCAACCCACGACTCGTACACCACCAAACTCTGCTTTCGCAACAGAAAATCCAGTACCATCTACCTCTACGAATACAACTTCGGTTATGACCATGTCCAACGCTGAAGTTCAACCAACTTCTCCATGCAAAACCGAGAGTATAATATCAACAGTAAGCAGACAAAATATTGGGATCATGGGGACAGAGAAACTAACAAAATCACCAAAAACCTCCAGGGAAAGAAAAACTTCTATCGACTCGAATAAAAATGGGAAACgATGTCAAATCAAATCTAAACAGAAGGGTATGGAAATTTGTTCCCCGACTAACAACGTCACATTTCCAAGCGCGAAACACGAAAACAATGAATCACGTTTGGTCGAGGCTCCAACGTTTCACCCCAGTGAGAAAGATTTTCAAGATCCGCTGGAATATATAGACAAAATAAGACCAATTGCGGAGAAATTTGGAATATGCAGAGTCGTACCGCCACCgaattttaaacCGGAGTGCAAAGTGTCGGATGATATGCGATTTACCGCGTATAATCAGTATGTGCATCGTATGCTTCATAGATGGGGTCCTAACGTAAAGGAAATGATGgctataaagaaatatttagcTACCCAAAGCATAACGTTGACTCATCCGCCTTGGATCGGTGGTATGGAAGTTGATTTACCACATCTATATCAAACAGTTCAAAGTTTAGGCGGGCTGAAAGAAGTTatcgaaaagaaaaaatggCAGAAAGTAGCAGACGGTATGAAGATACCAAAATCTGCCCAAGACCGTGTAACCAAATTAGACGACATTTATTGTAAATACTTACTACCGTACGATACATTATCTCCAGAGGAAAGAGGTAAACTGTTCGATGAAGTTGAGTCCGAGTGGATGAAAAGAGAAAGCAGAGCATTGCAAAGGCAAAATGCACCGGTGAATGATAACgaagaagatgaagaagaagaTAGCTCTGATGAAATCGAAGAATGCATCGTTAAAGGTAGAAATATGCCATTAAATGCTTTTTACCGTATCGCGCGAAACACGCAACGTATGTGGTTTGGAGAGAATCAGCGTTCTGGGAACGAAGCTGAAGGTGCTTCTGCCGATGAGGTTGAAAGTGCATTTTGGAAGCACGTTGCAGAAAGAAAGCGACACGTCTGTGTGCATGCTGCAAGCATCGATTCCAGTGGTCGTGGTTTTGGATTCTCCGTTGCCAAGAATAGCCCATTCGCTAGACATCCATGGAATCTTAAAGTACTTACTAATAATGCTGGTTCAGTGCTGAGAGCCTTGGGTCCGTTAATGGGTGTGACAGTACCAACGCTTCATGTGGGTATGTTGTTCAGCGCATGTTGTTGGTACCGTGATCCCCATGGTCTTCCATGGATAGAGTATTTGCATACAGGTGCTAAAAAGATTTGGTACGGCATACCAGACGAACATAACAATAACTTTAGAGAAGCACTTTCGAAAATGGTACCGCGATATTGTAAAAATAAGACTATATGGTTACCTTCGGATACTGCGATGGTCCCTCCAGAATTGTTGGTTAGTAACGGAGTATCATTGTGTCAGACCGTGCAAGAACCAGGCCAATTTATAATCGTATTTCCTAAAGCATTTACGTCAAGTATATGTACTGGCTATGTAGTATCTGAAAGTGTTTACTTTGCACAACCATCCTGGTTAGAAACAGCTGAACAAGTGTTTAAAGACATACAAGACAGCTGTGAGCCATCGATCTTTTCGTTCGAAAGATTGTTATTCAATATTATCAATGATTCTAGATCTCACATAGAAGTAATGAAACAGattttacCAAGCGTGATTAAAATTCGCGAGAAGGAAATAAATTACCGGAAACAGTTAGAATCTGTGGGACTCACGAACACTGAAAGATTGCCGTTGCCAGATAGCAGTAAACGAAAGAAAgggaaaaaagtaaaagaagatGACGGCGATTTTGAATGCGAAACTTGTCGAGCTAATCTATTCGTTTCGTTGATTAGTAATTCACAAGATGACAGTGTTTACTGTTTACCACATGCAATACAATTActtaatagaaagaaacaagCTTTAAAACATTGTACTTTGATGTACACCTACAATGAGGATGAATTGGATGATTTGATTCACAAACTGGAAGAAAGAATTGAAGCCAAATCTAAAAAGACTAATCAAATCAAACAAGCTAAGTAG
- Protein Sequence
- MVLSRNDKRKRKEGDLVDLMEPLSESPKRTKVHAQRKFAQGATTVFNASHTPIKDKEKTKPAVITELITHKRPNTEDFLTFLCFRGTSILPPNLNFFNVGNKKEKSDSKSVRVPIDKTTSSTSTSIENQKPDSSQKTITKMKPIVTNKKKVQNTIQKNITKFKTTTSTVQALKKKYQEQRLAKQRIQNKFKTSCVMRTRSCTERAILKPGNKLTPRKFLPRIETKRLGLRSSVLTDKVKKTSPKAKPVPPKPKKKVLVKQKNSDTSNSESTSEEEEEPSEKSVQQVKRATQKSVQKKICTRSKSEMRRITRSHSGTVSPKNLCRRPTRKTKEAAAVYMEILGRKLVSPDLENDDNLSMDSFPELPNARKIAQTESEIKAKVKQSITKTITKNKDGKITSIQSTSNKRSEKTKTSKITFKSKRLIRVQKYCEIDSDEESESSNGTNNARPVTRRSLGKLNKPASRFLRSSSKPVVSRMEIQNTVNIKSKSQVQSNMRFNKEKFVMKRKREQSFNKSLPEKGTTSKQKETKTTVNENTDSDEETLGMLLNKLKRKKAIHEQNQQIAANENNDDHANTNTNVEKVEQPVDKHSTKVDVLKVSDDEESFRGFTRKAISKVLNSCQTHVNANLLATEKTTSVLEASKAEEAENSNTSKEQEDKNKSLLEQTSLPTMNVPNDECIQSEKIQKTKSELPDETESQTTLLATTEKECYHKTEISSTNVLDMSLSTLHVRKEKVNMSNEQIEKWLNESSFAKEESKLEMENVSTFKYDVCEKKSDVSHLSISTKIQHLVRPVNVTLSKLAEKANIKDRMCIQSKYVPIAAVDIQSVDMKQQNEPINVNKINTDGKEMIKGRNIKLSKDPCLGEDNDTPLKSEQNSMDGSTEKKLPTEKKSIFQPRKPFLPKVKERKTVTPNANAFSPENESSVYAFESDTEVPVNTPFRRKVRDSNKSNVTITSSESDTNKSIEKIIKESCEMAEPKEKPNNVLSRNDNKIESKNTSNSMLNVNKFELPKNFATLANIQVLPLDKLTTTWSNVNCSASIAVQVNLDESAQTQEQAREKDTNQQKCTEISTQTENNNENDDENDGQLFYIPLQAVTRNGPNLVQGQQLIQGVAVKLGTEGPNGPNQKVLLRAKLVTKPPSSIARCPPVGTVQPTTRTPPNSAFATENPVPSTSTNTTSVMTMSNAEVQPTSPCKTESIISTVSRQNIGIMGTEKLTKSPKTSRERKTSIDSNKNGKRCQIKSKQKGMEICSPTNNVTFPSAKHENNESRLVEAPTFHPSEKDFQDPLEYIDKIRPIAEKFGICRVVPPPNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEERGKLFDEVESEWMKRESRALQRQNAPVNDNEEDEEEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRSGNEAEGASADEVESAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFREALSKMVPRYCKNKTIWLPSDTAMVPPELLVSNGVSLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFKDIQDSCEPSIFSFERLLFNIINDSRSHIEVMKQILPSVIKIREKEINYRKQLESVGLTNTERLPLPDSSKRKKGKKVKEDDGDFECETCRANLFVSLISNSQDDSVYCLPHAIQLLNRKKQALKHCTLMYTYNEDELDDLIHKLEERIEAKSKKTNQIKQAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01070844;
- 90% Identity
- iTF_00360698;
- 80% Identity
- -