Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.82 6.6e+03 -1.9 0.4 15 18 95 98 94 99 0.78

2 5 0.87 7e+03 -2.0 1.5 15 19 150 154 149 154 0.85

3 5 0.081 6.5e+02 1.3 0.4 4 10 185 191 184 191 0.95

4 5 2.6e-08 0.00021 22.1 16.1 1 18 199 215 199 216 0.98

5 5 1e-07 0.00084 20.1 16.2 1 19 252 271 252 271 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.82	6.6e+03	-1.9	0.4	15	18	95	98	94	99	0.78
2	5	0.87	7e+03	-2.0	1.5	15	19	150	154	149	154	0.85
3	5	0.081	6.5e+02	1.3	0.4	4	10	185	191	184	191	0.95
4	5	2.6e-08	0.00021	22.1	16.1	1	18	199	215	199	216	0.98
5	5	1e-07	0.00084	20.1	16.2	1	19	252	271	252	271	0.97

Coding Sequence: ATGGAAAGGTTCAACAAAGTTCAGGCTAAAAACGTAGCTGCGGCGCAAAAACTTTTGGATGCATTTGCTTCCAGCTCAGAAGATGAAGGCGAACTTGATGAAAAGCAAATTCTTGATTTATTATACAAACATTATCAGCCTTCCGATGATAAGTCCAGCAGAAGTGGGGTTCAATTGGCTGCCGTCCGCATATCCTCGGTTCTGGAAAATACCCTTCACTCGGGTGCGGCTACGTGCCTGATTTGCATTGGCAGCATTCGCCGCGTGGAATCAATATGGTCATGCCAAGCTTGctattgtttttttcatttaaattgtatccAGCGATGGGCCAACGACAGCCTCATGCAAATGAAGGTAAAAACGGAGGAAAATAGCAATCAGGGATATTACAACCATGCTGGCGAGTTCGTTCCACCTAAGCGCTCAAAGCCAGTGTACTGGCATTGTCCACAGTGCCGAAAGGATTATCAGCCTGCGGAGCGCCCCTCCCAGTACATTTGTTTCTGTGGCAAAGAGAGTAATCCGCAACCACAACCTTTTCTGGTGCCACATTCCTGTGGTGAAATCTGTGGCAAGCTACTACAGCCCAAGTGTGGTCACGAATGTAAATTGCTGTGTCATCCCGGACCGTGCCCGCCGTGCGCTCAAACCACCAATAATTCTTGCCTTTGTGGGAAGTCAGCTTTACAGTCCGTGAGATGCATAGACAAGAACTGGCAATGTCGGCTAACATGCACAGTTTTACTACCCTGCGGGAAACACAAATGCAACCAAACATGTCATCGACCAGGGCAATGTTCGCCTTGCACCAGCAAAAGTGTCCAACCCTGCGAGTGCAAGAGGGAAACTAAAACAGTCAACTGCTCTGACCT
Protein Sequence: MERFNKVQAKNVAAAQKLLDAFASSSEDEGELDEKQILDLLYKHYQPSDDKSSRSGVQLAAVRISSVLENTLHSGAATCLICIGSIRRVESIWSCQACYCFFHLNCIQRWANDSLMQMKVKTEENSNQGYYNHAGEFVPPKRSKPVYWHCPQCRKDYQPAERPSQYICFCGKESNPQPQPFLVPHSCGEICGKLLQPKCGHECKLLCHPGPCPPCAQTTNNSCLCGKSALQSVRCIDKNWQCRLTCTVLLPCGKHKCNQTCHRPGQCSPCTSKSVQPCECKRETKTVNCSD

Sequence clustering based on sequence similarity using MMseqs2