Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.062 5e+02 1.7 0.6 4 10 7 13 6 14 0.76

2 5 3.7e-11 3e-07 31.2 15.1 1 18 19 36 19 37 0.97

3 5 1 8.3e+03 -2.2 3.8 6 10 66 70 59 71 0.72

4 5 4 3.2e+04 -10.1 16.2 10 18 84 93 73 94 0.69

5 5 1.1 8.6e+03 -2.3 0.7 10 11 101 102 99 105 0.70

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.062	5e+02	1.7	0.6	4	10	7	13	6	14	0.76
2	5	3.7e-11	3e-07	31.2	15.1	1	18	19	36	19	37	0.97
3	5	1	8.3e+03	-2.2	3.8	6	10	66	70	59	71	0.72
4	5	4	3.2e+04	-10.1	16.2	10	18	84	93	73	94	0.69
5	5	1.1	8.6e+03	-2.3	0.7	10	11	101	102	99	105	0.70

Coding Sequence: TGCTGCATCGACATAGACCACGCGTGTCCCTTGCCCTGCAATCGCACCTTGACCTGCGGCCGCCATAAATGCGATCAACCCTGCCATCGCGGCAATTGTCCGCCCTGCTATCGCAGCAGCTTTGAGGAGCTTTATTGCGAATGTGGTGCCGAGGTGATCTATCCACCCGTGCCCTGCGGCACCAAGCGGCCGCCCTGCAAGCGGCCCTGTTCTCGAACCCATGCCTGTGAGCATCCGCCACAGCACAACTGTCATTCTGTGGCCACGTGCCCACCTTGCATGATCTTCACCATCAAATGGTGTCACGGACAGCACGAGCAGCGCAAGACGATACCCTGTTCCCAGGCCAGCTTCAG
Protein Sequence: CCIDIDHACPLPCNRTLTCGRHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPPCKRPCSRTHACEHPPQHNCHSVATCPPCMIFTIKWCHGQHEQRKTIPCSQASF

Sequence clustering based on sequence similarity using MMseqs2