Ckir004903.1
Basic Information
- Insect
- Collessia kirishimana
- Gene Symbol
- -
- Assembly
- GCA_035078785.1
- Location
- JAWNPV010002346.1:2883-6787[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.017 1.7 10.1 0.5 1 23 163 186 163 186 0.96 2 10 0.002 0.19 13.0 3.1 2 23 235 257 231 257 0.90 3 10 0.011 1.1 10.7 1.0 1 23 349 372 349 372 0.93 4 10 3.9 3.8e+02 2.7 2.0 2 23 421 443 420 443 0.89 5 10 0.00093 0.092 14.1 1.3 1 23 507 530 507 530 0.88 6 10 2.3 2.2e+02 3.4 0.1 2 14 549 561 548 573 0.85 7 10 0.00078 0.077 14.3 3.3 2 23 581 603 581 603 0.96 8 10 8.1e-05 0.008 17.4 1.0 1 23 681 704 681 704 0.96 9 10 0.00093 0.091 14.1 0.2 1 23 753 776 753 776 0.93 10 10 0.0013 0.13 13.6 2.2 2 23 826 848 825 848 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGCATGGACCTCTGGACATCAATGTTCTCATCGGAGTTTGATGAGGGCGAGGAGGACAGCCTTAAATATGGCAATGGTGATGGAAGCCAAATGCCTTCCGGCATAGACGATATAGAGGGTGTAGAAGgtgatgacaatgatgatgaggacGGCGATACTGATTACGGCCTTGTTAAAGATAATGCCAATGGAAATCGAAAAGGATCCGAGCCCGACGATGATGCCATTTTTGATTTTAGATTCGAACCCTTGGTAAACATTGCAGAGTCACCAGCACCGCCTCAAGCACCAGCAGTACCAACAATTGCTTCACGAGTGCGTTCCGTGCAGCGGCATTCGTTGCCCGCTTCAGTTGGCCCAGGAGTCTTGCGTAGCAAGGATAGCCTGCGCCCCACAGAAGCGTCCAGTCGTCCAGCAACATCTCAAATCAATGCAACCGACGAGAATGGTGTGCCTATAAACTATGAGCTGGGCGTAATTTACATATGTCCAGCCTGTGGAGATGAATATAGGCTACAGGACCACTGGAAACGACACATGAACTATATGCACCAGTTTAACACGCATCACGGTCTAAATTTTGAGGCCATTGACAAATTATATCATCGCTGTCTGGAGTGCAACAAGCGTATTGCTATGCACAGCAGGGAGAATCTGTTAAAGCACAAGTTTACTCATTTGCCGTTTCGATGCACCAAATGCTACATCTGCAAGCGCGAATACAAGTATAGGCAGGATCTAATGGTTCATTTGCGCATGGTACACATGGACGAGGTGGTGGCAATGATGCGTGAAGTTCGATTTGCCAGTGCTGGAGTCAAGACACGCGTCCGCGAGCCGCGTACAGAGCGGCTGGTTAACAACGAGGATTGCGTTGACGTACGAAAAGAAGTATTGGAGACTGAGGAGGAGAGTGGTATCCCCGTCAGATCAACGCATATGAGTGATGAGCAAAATTCGAAAAAACCACGCAACTCCGGAAAGTCTGCTGTAGGTCCGGCGTCGGCGGCTGCAGAGATATGTGAAGATTATATTCACTATACATGTCCAGACTGTGGCACCGATTGTGACAGTCATGCTCAGTGGAGTCAACATATTGAATTCGTTCATGACTATGTGAGCCGGCGTGGACTCAACTTTAGAAGCGTCGACATGCAGATGCAATGCATCGAATGCAAAAAGGTTGTTATGCCGAATACCATCAAAGAATTGCGGTTGCATAAATTCAGTCATTTAGCCCATCCCGAGTGGTTGCACTGTAAACTGTGTCGTAAGGGCTTCAAGGAGCACGGCGTTGTGGTTGAGCATTTGCTGCGGCAACACAATTTAGAGACACTTATGCCAGAATCACAGGCGAATCAGGCAGCAATTGGATCAGGTGGGGATGAATGTAATGACGAAAGCATTGGAACTGGAAACGAAAGTCAATGTGATGATGATTTGACCTGGGACGAAGGACCGCGGAGAGGCGCTCGTATTAGCCACGATGATATCTACGAGCCGCACATTGAGTATCTGTGTCCGCAATGCGGCAAAGAATTCATCGACAAGAAGCACTGGCGCCTGCATGTAGTTCATGTGCACGACATGAACGATCTGAGCAAGCTCAACTTTGAAGTGATAAACGATCGCCAGTTAAAATGCACCGAATGTGACAAGATTATTACGAACGCTTATGGCATACAGAATGCCCAGCAGCACAGGATTACACATTTGCCGCACAAGGCATATGCCAGGTGTCGCAAGTGCCATAAATCTTATACTGATCGCAAAGGTCTAGTGAAGCATTTGGCTACCTATCACCGGGTGAGCCAAGATCCACGCAAGATGGCAGGTGCCCCTATGTCTTCCTTAAAGTTGCTATCAGAGCCTAAACCACACAAGCAAATTGTGACGGTAGCGAATGAAACCTATGAGATTACCTACTTGGACGAAGAGCCATCGCCGGAAGAGAATGACTTTGGCGAGCAGATGCAGACAGACGAAGATGATTACGGTCCAACGGCGGATGTAGGGATGTCACATTCAAATCGACATAAATGCACAGATTGTGGCTCCCTTTTTACCAACCTGAGTGCACTTAAGTCGCACATCAGGGACGAACATGAGCTCATAGATAGCCCAGTTAGTGCCAAGAAATTCAAGAGTGATGTGCCAGTGCAAGCGCCAAAATTGCCAGTAACTCCTACTGCAACAGCAGGAAGAATACTTAACCGTTCGGGTAACTCGGTTGTCGAACAAAACTTCATTTTCTTATGCCCATCCTGTGGCGAACAGTATAAGACTCAGTTTGAGTGGCGACGCCATATAAACGAGGCCCACAATTTTGATAAACGGCAATATCTAAACATGCGTCAGCTGGACAAATTTCGTTACCAATGCACACAGTGCAATGACGTGGTTAGCAATTCGAAATTGAAGGGTCTCCAAGATCACCATTTCCGTCACCTGCCCTACAGGCTGTATTTAAAGTGTTTGGTTTGTGGCACTTGCTACAACCACAAGCCTAACATTGCAGCCCATTTGAGAACACGCCACAATATTTTCGAAAAGGAGACCTCCTGGCTTGATCAGCAATCGAAGGCCCAGTATTCATATGCCAAGGATAAGGAGACGGAAAGATCTGCACAAAACTCTCCGTTGGGCTCAGCTGGCGAGTTTGTCAGGAAGCAGATGTTTTTCAAGCACCTTAATCGGGATACAAATCGTTGCGACAACAAAATTGATACCGATGTAATAatcaatgatgatgaagaggaGAGTGCAGAGATAAAGCCTTCTGACGATACTGATGCAATAGCCGATGGAGATGAAGAGGATGACAATGCGGATGCGGTTTTAGATATATCCAGCTTCGCTTGGATTTGCCCGGTATGTGGAGATAGTTTCCTCAACCACGACAGCAAACAATTGTGGCGGGAGCACATTAACTCCGCTCATGGTCTTCACGATCGAAATATGCTCCAAATGCGTAAGGTATGCGAGGGCCGCTATCGCTGTATCGAATGCGAAGAATTGTTGTACACTTCCAAGTTGCACGTACTCCAAGAGCATCGATTTAAGCACCTGCGTTATCCGGCCTACTTGCGATGCGAGCTATGCCCGAACTCGCAGAATAATCCTGAAAGTCATTTCCACAGTGTACAGGACTTGCAGCAGCATTTGCGGGTGCAACATCACAAAACAGCCACGAATACAGAGACTAACCAACACTTGGCAGAAGCCGGTGATGAATGGCCAGATCAAGAGGAGTACGACGATgaaaataatgatgatgatgacatggATAGTCAGCCAACAAATGATTCGGAAAACAGTCTGCTAGTACCGCAGCAGCCTCAAATAATAGACAATGACGTAGATGACGTAGAATCCGAGGAACAGTATCTGCTAGGATAG
- Protein Sequence
- MEGMDLWTSMFSSEFDEGEEDSLKYGNGDGSQMPSGIDDIEGVEGDDNDDEDGDTDYGLVKDNANGNRKGSEPDDDAIFDFRFEPLVNIAESPAPPQAPAVPTIASRVRSVQRHSLPASVGPGVLRSKDSLRPTEASSRPATSQINATDENGVPINYELGVIYICPACGDEYRLQDHWKRHMNYMHQFNTHHGLNFEAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPFRCTKCYICKREYKYRQDLMVHLRMVHMDEVVAMMREVRFASAGVKTRVREPRTERLVNNEDCVDVRKEVLETEEESGIPVRSTHMSDEQNSKKPRNSGKSAVGPASAAAEICEDYIHYTCPDCGTDCDSHAQWSQHIEFVHDYVSRRGLNFRSVDMQMQCIECKKVVMPNTIKELRLHKFSHLAHPEWLHCKLCRKGFKEHGVVVEHLLRQHNLETLMPESQANQAAIGSGGDECNDESIGTGNESQCDDDLTWDEGPRRGARISHDDIYEPHIEYLCPQCGKEFIDKKHWRLHVVHVHDMNDLSKLNFEVINDRQLKCTECDKIITNAYGIQNAQQHRITHLPHKAYARCRKCHKSYTDRKGLVKHLATYHRVSQDPRKMAGAPMSSLKLLSEPKPHKQIVTVANETYEITYLDEEPSPEENDFGEQMQTDEDDYGPTADVGMSHSNRHKCTDCGSLFTNLSALKSHIRDEHELIDSPVSAKKFKSDVPVQAPKLPVTPTATAGRILNRSGNSVVEQNFIFLCPSCGEQYKTQFEWRRHINEAHNFDKRQYLNMRQLDKFRYQCTQCNDVVSNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIFEKETSWLDQQSKAQYSYAKDKETERSAQNSPLGSAGEFVRKQMFFKHLNRDTNRCDNKIDTDVIINDDEEESAEIKPSDDTDAIADGDEEDDNADAVLDISSFAWICPVCGDSFLNHDSKQLWREHINSAHGLHDRNMLQMRKVCEGRYRCIECEELLYTSKLHVLQEHRFKHLRYPAYLRCELCPNSQNNPESHFHSVQDLQQHLRVQHHKTATNTETNQHLAEAGDEWPDQEEYDDENNDDDDMDSQPTNDSENSLLVPQQPQIIDNDVDDVESEEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -