Basic Information

Insect: Collessia kirishimana
Gene Symbol: -
Assembly: GCA_035078785.1
Location: JAWNPV010013532.1:1-1889[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00046 0.045 15.0 1.1 1 23 24 47 24 47 0.92

2 11 6.8e-05 0.0067 17.6 1.2 2 23 55 77 54 77 0.97

3 11 0.0085 0.84 11.0 9.1 2 23 331 352 331 352 0.97

4 11 1.5e-06 0.00014 22.9 2.9 1 23 358 381 358 381 0.95

5 11 0.00032 0.031 15.5 0.3 1 23 386 409 386 409 0.96

6 11 6.3e-06 0.00063 20.9 3.6 1 23 427 449 418 449 0.98

7 11 1.7e-05 0.0017 19.5 0.8 1 23 454 476 454 476 0.98

8 11 2.5e-05 0.0025 19.0 1.7 1 23 482 504 482 504 0.95

9 11 1.8e-05 0.0018 19.4 0.7 1 23 510 532 510 532 0.98

10 11 2.6e-07 2.6e-05 25.2 2.7 3 23 540 560 539 560 0.99

11 11 1.9e-08 1.9e-06 28.8 1.1 1 23 566 588 566 588 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00046	0.045	15.0	1.1	1	23	24	47	24	47	0.92
2	11	6.8e-05	0.0067	17.6	1.2	2	23	55	77	54	77	0.97
3	11	0.0085	0.84	11.0	9.1	2	23	331	352	331	352	0.97
4	11	1.5e-06	0.00014	22.9	2.9	1	23	358	381	358	381	0.95
5	11	0.00032	0.031	15.5	0.3	1	23	386	409	386	409	0.96
6	11	6.3e-06	0.00063	20.9	3.6	1	23	427	449	418	449	0.98
7	11	1.7e-05	0.0017	19.5	0.8	1	23	454	476	454	476	0.98
8	11	2.5e-05	0.0025	19.0	1.7	1	23	482	504	482	504	0.95
9	11	1.8e-05	0.0018	19.4	0.7	1	23	510	532	510	532	0.98
10	11	2.6e-07	2.6e-05	25.2	2.7	3	23	540	560	539	560	0.99
11	11	1.9e-08	1.9e-06	28.8	1.1	1	23	566	588	566	588	0.99

Sequence Information

Coding Sequence: CTGGAGCTGCGGCTGCATCGGAATCAGGTGCACAAGTCCAAGGACAGCACCAATGGCCGTGGCGATGACTTTAAATGCAAGTTGTGCTCACAGCGGTTCATTCAGTTGCGGCAACTGCGCAGTCACTTGGTCCAGGCGCATGACTATGTAACCGGACACGTCGAATGCAGCCTTTGTCCGAGTTCCTTTACGCGTCGCGATCACATGCTCCGTCACGTACGCACTGTGCACAAGGGACTCCGAAGAACGGCTCTGGGCTTGGGATCGTCCGAGGCAAGGATgctgaagaagaaaaaagagcCAAAGCAGGAGCAGGAACTGTCCTCGGAGTGGGCACATCCCGTTGAAGTAACCATGCAGGTGGCTGGGGAAGAACTGGAATCCGCTACGGTTTTGCTTAACTCAAACGCCGATGAAGAGGGCGATGTGGACTATCAGTGCAACACGAATCCCATTTCCAGCAACGAGGAAGACGACGCCGATGCAGAAGCCAAGGAATCCCTGTGGCTGCACATAAAGCCGGAACCCATACTGGAGGACGACAACGTTGGCGGCGAAGCTGTGAAGCAGGAGAAGAAACGTAAACGAAGGCAAAAACCTGAGGTTTCCTGTGACGGAAGTCAGACAAAGTCATCCCCCAGCGAGGTTGTGGCCGTCAAAGAGGAGCCAGTGACCAACCCCGAGCCGCAGGTAAATATTAAGGAGGAGCGTCCGCTCCTCAATAGCAATAACGATGACGAGGAAGATGATTATCTTGAGGAGGCGTTCGACATGGGTAATGTGTCTGCTCAGTCCGATGACGAGGATGTCGACGAGGAGGACAATGAGGAAGATGAAAGTGCTTtagaagacgacgacgacgatgatgatgaggaggagCCAGAGGACGACGATGAGAACGAACCAAAACTAGAATTTGCAAAGAAGCCGTCAACTGTCAAGCAGCGTCGACGACGTCGGAACAAACACAGCGAACCGAATCCGGAGAACCGCTGCGATGTCTGCCAGCGCACATTCTCACGCCACTGCCACCTGCTTAGGCACAAGCTGTCGCATCTAGAGCAGAAGCCGCACAATTGTCCGCACTGCCCAAAGGCCTTTGCCCGCAGCGATCACCTCAAGGCCCATGTCCAGAGTCTGCACAGCAACAAGGACCACAAGTGCGATCAGTGTGCGGCCGCCTTTGCCCGCCCCGATGCCCTCGAGCGGCATAAGATGAGCAAGCACAACGGCGAGGGCGTCCCCCCAACCAGTGGCCTCAAGCTACACCTAAGCGAGCACACCTGTGAGTACTGCTCAAAGCGTTTCTCCAGCAAAACGTACCTGCGCAAGCACACGCTCATCCACACGGACTTCCTTTACGCCTGCAAGACCTGCGACGAGACCTTCAAGGAGCGCGGCCAGCTGCGTGAGCATGAGAAGACGCACACGGGTCAACGCAACTTTCTCTGTTGCATTTGCGGCGACAGTTTTGCCCGCAACGACTATCTGCGTGTCCACATGCGACGCCACAATGGCGAGAAGCCGTACAAATGCCGCTACTGTGTCAAGGCCTTTCCCCGCGCCACCGATCTCAAGGTGCACGAACGCTATCACACGGGTACGAAGCCGAATCTGTGCAACACCTGTGGCAAAAGCTTCCATCGAGCCTACAATCTGACCATCCACATGCGCACGCACACCGGCGAGCGGCCGTACAAGTGCGATCAGTGCCCGAAGAGCTTCACGCAGAGCAATGACCTCAAGGCGCACATACGTCGCCAC
Protein Sequence: LELRLHRNQVHKSKDSTNGRGDDFKCKLCSQRFIQLRQLRSHLVQAHDYVTGHVECSLCPSSFTRRDHMLRHVRTVHKGLRRTALGLGSSEARMLKKKKEPKQEQELSSEWAHPVEVTMQVAGEELESATVLLNSNADEEGDVDYQCNTNPISSNEEDDADAEAKESLWLHIKPEPILEDDNVGGEAVKQEKKRKRRQKPEVSCDGSQTKSSPSEVVAVKEEPVTNPEPQVNIKEERPLLNSNNDDEEDDYLEEAFDMGNVSAQSDDEDVDEEDNEEDESALEDDDDDDDEEEPEDDDENEPKLEFAKKPSTVKQRRRRRNKHSEPNPENRCDVCQRTFSRHCHLLRHKLSHLEQKPHNCPHCPKAFARSDHLKAHVQSLHSNKDHKCDQCAAAFARPDALERHKMSKHNGEGVPPTSGLKLHLSEHTCEYCSKRFSSKTYLRKHTLIHTDFLYACKTCDETFKERGQLREHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -