Ckir008449.1
Basic Information
- Insect
- Collessia kirishimana
- Gene Symbol
- ZNF296
- Assembly
- GCA_035078785.1
- Location
- JAWNPV010006104.1:42-1403[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00045 0.044 15.0 7.1 1 23 68 90 68 90 0.99 2 12 2.8e-06 0.00027 22.0 1.4 1 23 103 125 103 125 0.98 3 12 0.00063 0.062 14.6 0.2 2 23 132 153 131 153 0.96 4 12 0.0018 0.17 13.2 4.0 1 23 159 181 159 181 0.97 5 12 2.4e-05 0.0024 19.1 3.3 2 23 200 221 199 221 0.97 6 12 1.4e-07 1.3e-05 26.1 0.1 1 23 227 249 227 249 0.98 7 12 2.8e-05 0.0027 18.8 0.2 1 23 255 277 255 277 0.98 8 12 0.00017 0.017 16.3 1.6 2 23 292 313 291 313 0.97 9 12 2.8e-07 2.7e-05 25.1 1.6 1 23 319 341 319 341 0.99 10 12 0.0015 0.14 13.4 7.7 1 23 347 369 347 369 0.99 11 12 1.3e-05 0.0013 19.9 0.6 2 23 387 408 386 408 0.96 12 12 1.1e-05 0.0011 20.1 1.4 1 23 414 436 414 436 0.99
Sequence Information
- Coding Sequence
- ATGGAGAACGTGCGTGTTAAGATAGAACATGTTGATGACGACGAGGCTAAAGCCTTACCAATGCTTGTTTATGTCGCCGGCCTGCACACAGATATTGAATTGGGCCCCGTTAAAATAGAAAGCGAAGATAAATTTGACGCATCGGATTTACAGTATAAAACTGAAGTGCACGAGGAAGCCATACCACTTAGAGTCCGTTCCTACCGATGCTGCCATTGCCCCAAGGCCTTTCACAATAGCTACAATCGAAATGCTCATCTACGCGTTCATCCTATTCGCCTGCGGATTCAGAATGGCGAGCGCCCATTTCGATGCACCCAATGTCCCAAAGCATTTACCCGTAGGAGCGTATTGAAGATCCACTTCCGTGTTCATGCTGCTCAGCGTTTGCTTAAGTGCGCGCAGTGCTCGGAAAGCTTTGTCAACCGTGAAGCTCTAATAATTCATTTCCAATCGCACGCCAGCGAAAGGACATTTGCTTGTCCGCACTGTTCTAGGATTTATAGTCGGGAACACAATCTCAAGTTTCATCTGCTGACTCATGCCAACGGAATTGCATCTGGTGAAAAAGCGAACGATGCCCAGATATCATTTGTATCGTGTTCCTTCTGTCAACGTGTCTGTAGGAATCAATATGAACTCAGGATTCATATGCGGAAGCACACAGGCGAGAAGCCGTTCGAGTGTCCGCAGTGCTCCAAGGCATTTGCGCGTCCTGGCAATCTGAATGTTCACGTACGACGGCATACAGGCGAACGAGATCACAAGTGTCCCTTGTGTGCAAAAGCATTTATTCGCGCCACGGACCTGGATGCTCATGTAAAAACTCACACAGTGGGTAATCCACCCAAAGAGCTTTTGGTTAATTCAAAAACCTGCTCAGTCTGTCAATATAACAGCCGAAGTCAAGCTGAACTCAAAATGCACATGCGAAAGCACACTGGCGAGCGACCATTTAAATGCCCACAGTGTCCAAAGACCTATGCAAATGGCAGCCACCTGCGGAATCACATCCGCAGTCACTCTGAGCAGCGACGATTCAAGTGTCAACACTGCACAAAAACCTACGTCCACGAGAGGGATCTAAAGTTTCACATGCGCACGCATTTAGACAGGAACCCCTCTAACGACTCTAAGAACGTTGCGGTTAATTTTAAATCCTGTTCAGCATGCGAGCGAGTCTTCAGAGGTCAGTACGAGCTCAGAGTGCACATGCGTACGCACACTGGCGAGCGGCCATTCAAATGTCTGCAGTGCCTAAAGGATTTTGCCAatccaaataattttaaagtccACATGCGTCGACATACGTTAAAAAGTCTGAAGAAGTCGAAGCAGTCAAAGATTAATAGCTCTACCTAG
- Protein Sequence
- MENVRVKIEHVDDDEAKALPMLVYVAGLHTDIELGPVKIESEDKFDASDLQYKTEVHEEAIPLRVRSYRCCHCPKAFHNSYNRNAHLRVHPIRLRIQNGERPFRCTQCPKAFTRRSVLKIHFRVHAAQRLLKCAQCSESFVNREALIIHFQSHASERTFACPHCSRIYSREHNLKFHLLTHANGIASGEKANDAQISFVSCSFCQRVCRNQYELRIHMRKHTGEKPFECPQCSKAFARPGNLNVHVRRHTGERDHKCPLCAKAFIRATDLDAHVKTHTVGNPPKELLVNSKTCSVCQYNSRSQAELKMHMRKHTGERPFKCPQCPKTYANGSHLRNHIRSHSEQRRFKCQHCTKTYVHERDLKFHMRTHLDRNPSNDSKNVAVNFKSCSACERVFRGQYELRVHMRTHTGERPFKCLQCLKDFANPNNFKVHMRRHTLKSLKKSKQSKINSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -