Ckir015585.1
Basic Information
- Insect
- Collessia kirishimana
- Gene Symbol
- -
- Assembly
- GCA_035078785.1
- Location
- JAWNPV010026581.1:1-1172[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-10 1.9e-06 28.3 0.0 1 44 107 150 107 151 0.91 2 2 8.1 2.2e+04 -3.9 1.1 4 17 276 288 276 290 0.75
Sequence Information
- Coding Sequence
- GCCAATGCCAATCCGGCCGACTCCTCGCAGCAGCAAACCACTCTGAATGCGAATCCTCTGCTGCGGACAGACGCCAGCTCCTCCGCCGCGGAGAAGCCTCCCAGCcatcagcagcttcagcagcagcagcaacaacagcagcaacagcaacagcagcagcaacagtcgctccaccaggcaggcagcttcaatGGCTCTGACTATGGCGGCGACAAGGAGCCGCTCTCGCCCCACACAGATCGCTCATTCGATGACGAgagcggtggcggcggcggtggcagcggcaagaAACCCGAATGGAAGCGCTATAAGCAATATACCCGTGCAGACATGATGTGTGCCATCCAGTGTGTGCGCGAGGGCATGAGCGCCCTCCAGGCCAGCCGCAAGTTCAATCTGCCCAGTCGCACCCTCTACGACAAGGTGCGCAAGCTCAACATCACCACCGGTCGTGGCACCCATCGCACGCCCAAGCGTAGTCCGCCaggtggcggcagcggcggtggctctagtggtggtggtggcggggGATCTTTGGGCCTGGAAACCGCCGCCTCATTTCCCTACTCGgctgccgcagctgctgcagctgcagccgccgCTGCCCATGGCTATGGCGAACGGGAACGCTCCCTGGACCGAGAGCACTATGAGAGCAAAGACCATGtccatcaccaccatcatggCTCCCACCTGCCGCCCGCCATTCCCCACTCGGCAGCCGCCCTGCTGGATCATGCCTTCCTGCAGCAAGCTCTGGAGAACCGCGGAGCTGGCGGTGGCGGCTCTGGCGACATGGCTGGCCGCGAGGCCCTGCATGCCATGGCCTTGGCTGCTGCAGCCCATGCAGCGGCCAACCGcatgtccagcagcagcagcagcccaccGGGCTCCAATGGACACATCCAGGCCCTGCGTTCGCCCAGTCCCTGCTCAAGTCCCAAGCACAGTGAGCGCTTGATTAAGCACGAGGCCATGGACCTGGACATGGAGCCTGAGGAGCGGGAAggcgatgccgatgccgacgATGAGGACGATCATGTGGAGGACTTGTCTCTGGCCCGCAAAGGACGTCCTGAGTCGCCCTACACACCGCCACCGGCCACCACCAGACTGCCAGCCGCTTCGCCCATGGAAACTGCCAGCAGCGTCATTATGCACTCCAATGCAGC
- Protein Sequence
- ANANPADSSQQQTTLNANPLLRTDASSSAAEKPPSHQQLQQQQQQQQQQQQQQQQSLHQAGSFNGSDYGGDKEPLSPHTDRSFDDESGGGGGGSGKKPEWKRYKQYTRADMMCAIQCVREGMSALQASRKFNLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGGGSGGGSSGGGGGGSLGLETAASFPYSAAAAAAAAAAAAHGYGERERSLDREHYESKDHVHHHHHGSHLPPAIPHSAAALLDHAFLQQALENRGAGGGGSGDMAGREALHAMALAAAAHAAANRMSSSSSSPPGSNGHIQALRSPSPCSSPKHSERLIKHEAMDLDMEPEEREGDADADDEDDHVEDLSLARKGRPESPYTPPPATTRLPAASPMETASSVIMHSNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -