Ckir008272.1
Basic Information
- Insect
- Collessia kirishimana
- Gene Symbol
- bab2
- Assembly
- GCA_035078785.1
- Location
- JAWNPV010005852.1:1-1406[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-16 6.5e-13 49.0 0.0 4 43 1 41 1 43 0.95
Sequence Information
- Coding Sequence
- GCCATGGCCGAGGCCATATTCAGTGTGCTGAAGGAGGGTCTGTCGCTGTCGCAGGCAGCCCGTAAATACGACATCCCGTATCCGACGTTTGTGCTGTACGCCAATCGGGTGCACAATATGCTGGGACCGTCGCTGGATGGTGGCACTGATCCCAGGCCGAAGGCTCGTGGCAGACCGCAGCGCATACTGCTGGGCATGTGGCCAGAGGAGCTCATACGCAGTGTCATCAAGGCTGTGGTGTTCCGTGACTACAGGGAGATCAAGGATGAAATGGGATCGCATCCTTATGCCAATGGACAGGCTCATCCGTCGCATTATGGCCATGGTGCCGGCAATCCCGTGACAGCAGCCAATGGCTATCACagtgcagctgcagcggccaAGATGGCTGCCCAAAGCGCCGCCTTAGTGCCACCCGATTCCAACAGTCCGCTCAGCTCCATGACGGAGTCACTGCGCCGTCAGAttttgcagcaacagcagcaacaacagtcgccACACGCATCTATGAACATGTACAAGTCGCCAGCGTATCTGCAGCGCTCCGAGATTGAGGATCAAGtgtcggctgctgctgccgtggCGGCTGCCAAGCATCAGCAGAACGAACGTCGTGGTTCTGAGAATCTACCCGACCTGAGTGCCCTGGGCTTGATGGGGCTGCCGGGTCTGAATGTTTTGCCCTCGCAGCAGGCGGCTCATCAGCGAGGCTCCTCGGGCaatggcggtggcagcggtggagctgccgctgccatgcACTCTAGTGCCGCCAGCTATGCGCGAGATCTGTCCCGTGAACGTGAACTGTCCAGGGATCGTGAACTCAAGGAGGCCATGCAGGCACGTCAGTATGGCAATCAGTCGCGGGGTTCCAATTCGtcgggcggcggcggcggcaagtCTGGCTCAGGACATGGTGGGGCCTCCTCAAGTCGGCCCGGAGCCGCCTCGCCGTATGCCTCGCACCCATCACAGTATGCCAAGCATGCCAAGGAGCATCCCAACTATGCTTACAACAAGAGATTCCTGGAGAGTCTACCGGCTGGCATAGACTTCGAGGCCATAGCCAATGGGTTGTTGCAAAAGTCGGTGAATAAGAGTTCGCGCTTCGAGGACTTCTTTCCCAGCCAGGATATGAGTGAGCTGTTTGCCAGCGCCGATGCTGgggctgcagcagctgcagcagccgctgcctaTGCACCCGGGGTCGTACGTGAGTCGCCGCTGATGAAGATCAAGctggaacagcaacaggcagcagagTTGCCGCATGAGGATTAA
- Protein Sequence
- AMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKDEMGSHPYANGQAHPSHYGHGAGNPVTAANGYHSAAAAAKMAAQSAALVPPDSNSPLSSMTESLRRQILQQQQQQQSPHASMNMYKSPAYLQRSEIEDQVSAAAAVAAAKHQQNERRGSENLPDLSALGLMGLPGLNVLPSQQAAHQRGSSGNGGGSGGAAAAMHSSAASYARDLSRERELSRDRELKEAMQARQYGNQSRGSNSSGGGGGKSGSGHGGASSSRPGAASPYASHPSQYAKHAKEHPNYAYNKRFLESLPAGIDFEAIANGLLQKSVNKSSRFEDFFPSQDMSELFASADAGAAAAAAAAAYAPGVVRESPLMKIKLEQQQAAELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01549501;
- 90% Identity
- iTF_00804310;
- 80% Identity
- -